FC899096

Overview
NameFC899096
Unique NameFC899096
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length541
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3511 contig Ccv1_Contig3511:157..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_SHIB3 (Malate dehydrogenase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.866e-28
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_SHESA (Malate dehydrogenase OS=Shewanella sp. (strain ANA-3) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.866e-28
Identity = 68/117 (58.12%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFNINAGIV+ L E +A  CPKA+V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEIKGFAGEDPTP-ALEGADVVLISAGVARKPGMDRSDLFNINAGIVRNLIEKVAVTCPKALVGII 117
[Close]
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_SALTY (Malate dehydrogenase OS=Salmonella typhimurium GN=mdh PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 5.866e-28
Identity = 69/117 (58.97%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + IAK CPKA V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGII 117
[Close]
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_SALTI (Malate dehydrogenase OS=Salmonella typhi GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.866e-28
Identity = 69/117 (58.97%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + IAK CPKA V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGII 117
[Close]
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_SALSV (Malate dehydrogenase OS=Salmonella schwarzengrund (strain CVM19633) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.866e-28
Identity = 69/117 (58.97%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + IAK CPKA V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGII 117
[Close]
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_SALPK (Malate dehydrogenase OS=Salmonella paratyphi A (strain AKU_12601) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.866e-28
Identity = 69/117 (58.97%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + IAK CPKA V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGII 117
[Close]
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_SALPC (Malate dehydrogenase OS=Salmonella paratyphi C (strain RKS4594) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.866e-28
Identity = 69/117 (58.97%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + IAK CPKA V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGII 117
[Close]
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_SALPB (Malate dehydrogenase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.866e-28
Identity = 69/117 (58.97%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + IAK CPKA V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGII 117
[Close]
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_SALPA (Malate dehydrogenase OS=Salmonella paratyphi A GN=mdh PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 5.866e-28
Identity = 69/117 (58.97%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + IAK CPKA V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGII 117
[Close]
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_SALNS (Malate dehydrogenase OS=Salmonella newport (strain SL254) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.866e-28
Identity = 69/117 (58.97%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + IAK CPKA V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGII 117
The following BLAST results are available for this feature:
BLAST of FC899096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
MDH_SHIB35.866e-2857.26Malate dehydrogenase OS=Shigella boydii serotype 1... [more]
MDH_SHESA5.866e-2858.12Malate dehydrogenase OS=Shewanella sp. (strain ANA... [more]
MDH_SALTY5.866e-2858.97Malate dehydrogenase OS=Salmonella typhimurium GN=... [more]
MDH_SALTI5.866e-2858.97Malate dehydrogenase OS=Salmonella typhi GN=mdh PE... [more]
MDH_SALSV5.866e-2858.97Malate dehydrogenase OS=Salmonella schwarzengrund ... [more]
MDH_SALPK5.866e-2858.97Malate dehydrogenase OS=Salmonella paratyphi A (st... [more]
MDH_SALPC5.866e-2858.97Malate dehydrogenase OS=Salmonella paratyphi C (st... [more]
MDH_SALPB5.866e-2858.97Malate dehydrogenase OS=Salmonella paratyphi B (st... [more]
MDH_SALPA5.866e-2858.97Malate dehydrogenase OS=Salmonella paratyphi A GN=... [more]
MDH_SALNS5.866e-2858.97Malate dehydrogenase OS=Salmonella newport (strain... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA31AF07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA31AF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC899096 ID=FC899096; Name=FC899096; organism=Citrus clementina; type=EST; length=541bp
ATTTTCTGTGAATTGTTTGTTTTATCACAACTAAGTCTCCAGAAACTCAG
AACCATGCAGCAGCCAACTTCAGGAGCAAATCAACGCATTGCGAGAATCG
CTGCTCATCTCCATCCACCAACTCTCCAGATAGAGGGAGAGAGTTCGGGT
TTGGGGCGGATGGATTGCAGGGCAAAAGGCGGGTCGCCCGGATTCAAGGT
GGCTGTATTGGGAGCTGCTGGAGGGATTGGACAGCCTCTGGCTATGTTGA
TGAAGATCAATCCCTTGGTTTCAGTTCTTCATCTTTATGATGTTGTCAAT
ACTCCTGGGGTTACTGCCGATATCAGTCACATGGATACAAATGCTGTGGT
ACGAGGATTTTTGGGGCAACAGCAATTGGAGGATGCCCTCACGGGCATGG
ACATTGTAATCATTCCCGCTGGTGTTCCTAGGAAACCTGGAATGACTAGG
GATGATCTGTTCAATATCAATGCCGGAATTGTTAAGACCCTTTGTGAAGG
AATAGCTAAGTGCTGTCCAAAAGCTATTGTGAACTTGATTA
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