FC899927

Overview
NameFC899927
Unique NameFC899927
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length807
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15518 contig Ccv1_Contig15518:109..915. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC899927 vs. ExPASy Swiss-Prot
Match: PGK_NOSP7 (Phosphoglycerate kinase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=pgk PE=3 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.341e-66
Identity = 128/186 (68.82%), Postives = 146/186 (78.49%), Query Frame = 3
Query:  246 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAV 803
            M+KKS+  LS AD+ GK+  VR D NVP+DD   ITDDTRIRAA+PTI+ L Q GAKVIL+SH GRPKGV  K  L P+  RLSELLG +V+K DD IG EV   VA+L  G VLLLENVRFY EEEKND EFAKKLA+ AD YVNDAFGTAHRAHASTEGVTK+L PSVAG+L++KEL YL  A+
Sbjct:    1 MSKKSLASLSSADISGKRALVRVDFNVPVDDQGKITDDTRIRAALPTIQDLTQKGAKVILASHFGRPKGVDDKLRLTPVAKRLSELLGQEVIKTDDSIGDEVAAKVAALQNGQVLLLENVRFYPEEEKNDAEFAKKLAANADFYVNDAFGTAHRAHASTEGVTKFLSPSVAGYLVEKELQYLQNAI 186          
BLAST of FC899927 vs. ExPASy Swiss-Prot
Match: PGK_GLOVI (Phosphoglycerate kinase OS=Gloeobacter violaceus GN=pgk PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 5.765e-65
Identity = 127/182 (69.78%), Postives = 144/182 (79.12%), Query Frame = 3
Query:  246 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYL 791
            MAKK+V  L  ADLKGK+  VR D NVPLD++  ITDDTRIRAA+PTI  L   GA+VIL SHLGRPKG   +  L P+  RL ELLG  V KADD IGPEVE+ V  L +G VLLLENVRFY EEEKN+PEFA+KLA LA+LYVNDAFGTAHRAHASTEGV +YL+P+VAG LLQKEL+YL
Sbjct:    1 MAKKTVEALGAADLKGKRALVRVDFNVPLDESGQITDDTRIRAALPTIGMLTGGGARVILVSHLGRPKGFDDQLRLTPVAKRLGELLGQTVYKADDVIGPEVEEAVKKLEDGDVLLLENVRFYPEEEKNNPEFAQKLAGLAELYVNDAFGTAHRAHASTEGVARYLRPAVAGLLLQKELEYL 182          
BLAST of FC899927 vs. ExPASy Swiss-Prot
Match: PGK_CYAP4 (Phosphoglycerate kinase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=pgk PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.861e-64
Identity = 128/192 (66.67%), Postives = 148/192 (77.08%), Query Frame = 3
Query:  246 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVT------PKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAV 803
            M+KK+V  LS ADL GK+V VR D NVPLDD   ITDDTRIRAA+PTI+ L   GAKVILSSH GRPKG T       KF L P+  RLSELLG  V K +DCIG EV+  VA++  G VLLLENVRF+  EE N PEFA++LAS+ADLYVNDAFGTAHRAHASTEGVT+YL+PSVAG+L++KEL YL  A+
Sbjct:    1 MSKKTVANLSAADLAGKRVLVRVDFNVPLDDQGKITDDTRIRAALPTIQDLTSKGAKVILSSHFGRPKGETFAERVKDKFRLTPVAARLSELLGKPVPKPNDCIGEEVKAQVAAMQNGDVLLLENVRFHPGEEANTPEFAQELASVADLYVNDAFGTAHRAHASTEGVTRYLRPSVAGYLIEKELQYLQSAI 192          
BLAST of FC899927 vs. ExPASy Swiss-Prot
Match: PGK_TRIEI (Phosphoglycerate kinase OS=Trichodesmium erythraeum (strain IMS101) GN=pgk PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 5.396e-63
Identity = 126/187 (67.38%), Postives = 149/187 (79.68%), Query Frame = 3
Query:  246 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAV 803
            M KK+V  LS +DL GKKV +RAD NVP+D N +ITDDTRIRAA+PTI+ L + GAKVIL+SH GRPKG V  K  L  +  RLSE+LG +V K DDCIG EV   VA + +G V+LLENVRFY  EE NDPEFAK+LAS+ADLYVNDAFGTAHRAHASTEGVTKYL PSVAG+L+++EL +L GA+
Sbjct:    1 MTKKTVASLSKSDLSGKKVLMRADFNVPVD-NGSITDDTRIRAALPTIQDLTEKGAKVILTSHFGRPKGKVNEKMRLTLVGERLSEVLGKEVKKCDDCIGDEVTSTVAEMKDGDVVLLENVRFYSGEEGNDPEFAKQLASVADLYVNDAFGTAHRAHASTEGVTKYLSPSVAGYLIEQELKFLQGAI 186          
BLAST of FC899927 vs. ExPASy Swiss-Prot
Match: PGK_PROMA (Phosphoglycerate kinase OS=Prochlorococcus marinus GN=pgk PE=3 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 9.205e-63
Identity = 124/187 (66.31%), Postives = 146/187 (78.07%), Query Frame = 3
Query:  246 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAV 803
            MAK+S+  LS  DL GK+V VR D NVPL++  +ITDDTRIRAA+PTI+HLI+  A+VILS+H GRPKG V     L P+  RLSELLG  VVK + CIGP+ EK V  +  G V+LLENVRF  EEEKND EFAKKLASLA++YVNDAFG AHRAHASTEGVT YL PSVAG+L++KEL YL GA+
Sbjct:    1 MAKRSLSNLSVEDLCGKRVLVRVDFNVPLNEEGSITDDTRIRAALPTIQHLIEKEARVILSAHFGRPKGKVNEDMRLTPVSQRLSELLGKTVVKTESCIGPDAEKKVHEMSNGDVVLLENVRFIGEEEKNDSEFAKKLASLAEVYVNDAFGAAHRAHASTEGVTNYLSPSVAGYLMEKELKYLQGAI 187          
BLAST of FC899927 vs. ExPASy Swiss-Prot
Match: PGK_SYNS3 (Phosphoglycerate kinase OS=Synechococcus sp. (strain CC9311) GN=pgk PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.202e-62
Identity = 123/187 (65.78%), Postives = 146/187 (78.07%), Query Frame = 3
Query:  246 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAV 803
            MAK+S+ +L+ +DL GK+V VR D NVPL+D   ITDDTRIRAA+PTI  LI  GAKVIL++H GRPKG V  K  L P+  RLSELL   V K + CIGP+ E  V ++  G V+LLENVRF+ EEEKND +FAK+LA LAD+YVNDAFG AHRAHASTEGVTK+LKPSVAGFL++KEL YL GAV
Sbjct:    1 MAKRSLAKLNTSDLSGKRVLVRVDFNVPLNDAGAITDDTRIRAALPTINDLIGKGAKVILAAHFGRPKGQVNDKMRLTPVATRLSELLSKPVTKTESCIGPDAEAKVNAMANGDVVLLENVRFFAEEEKNDADFAKQLAGLADVYVNDAFGAAHRAHASTEGVTKFLKPSVAGFLMEKELQYLQGAV 187          
BLAST of FC899927 vs. ExPASy Swiss-Prot
Match: PGK_SYNSC (Phosphoglycerate kinase OS=Synechococcus sp. (strain CC9605) GN=pgk PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.570e-62
Identity = 123/187 (65.78%), Postives = 143/187 (76.47%), Query Frame = 3
Query:  246 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAV 803
            MAK+S+  L+  DL GK+V VR D NVPL+D   ITDDTRIRAA+PTI  LI  GAKVILS+H GRPKG V     L P+  RLSELLG  V K D CIGP+ E  V ++  G V+LLENVRF+ EEEKN+  FA+KLA LA++YVNDAFG AHRAHASTEGVTK+LKPSVAGFL++KEL YL GAV
Sbjct:    1 MAKRSLASLNAGDLSGKRVLVRVDFNVPLNDTGAITDDTRIRAALPTINDLIGKGAKVILSAHFGRPKGQVNDAMRLTPVAARLSELLGKPVAKTDSCIGPDAEAKVGAMANGDVVLLENVRFFAEEEKNEAGFAEKLAGLAEVYVNDAFGAAHRAHASTEGVTKFLKPSVAGFLMEKELQYLQGAV 187          
BLAST of FC899927 vs. ExPASy Swiss-Prot
Match: PGK_SYNS9 (Phosphoglycerate kinase OS=Synechococcus sp. (strain CC9902) GN=pgk PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.678e-62
Identity = 122/187 (65.24%), Postives = 143/187 (76.47%), Query Frame = 3
Query:  246 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAV 803
            MAK+S+  L+  DL GK+V VR D NVPL+D   ITDDTRIRAA+PTI  L+  GAKV+L++H GRPKG V     L P+  RLSELLG  V K D CIGP+ E  V ++  G V+LLENVRF  EEEKND  FA+KLA+LAD+YVNDAFG AHRAHASTEGVTK+LKPSVAGFL++KEL YL GAV
Sbjct:    1 MAKRSLASLNAGDLSGKRVLVRVDFNVPLNDAGAITDDTRIRAALPTINDLVGKGAKVVLAAHFGRPKGQVNEAMRLTPVAARLSELLGKTVTKTDSCIGPDAEAKVGAMANGDVVLLENVRFVAEEEKNDSGFAEKLAALADVYVNDAFGAAHRAHASTEGVTKFLKPSVAGFLMEKELQYLQGAV 187          
BLAST of FC899927 vs. ExPASy Swiss-Prot
Match: PGK_ACAM1 (Phosphoglycerate kinase OS=Acaryochloris marina (strain MBIC 11017) GN=pgk PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.678e-62
Identity = 123/187 (65.78%), Postives = 143/187 (76.47%), Query Frame = 3
Query:  246 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAV 803
            M+KK++  L+ ADL GK+V VRAD NVPLD +  ITDDTRIRAA+PTI+ L   GAKVIL+SH GRPKG V     L P+  RLSELLG  V K DDCIG EV   V +L  G V LLENVRF+  EE NDPEFA++LAS+ADLYVNDAFGTAHRAHASTEGVT +L PSVAG+L++KEL YL  A+
Sbjct:    1 MSKKTIANLTSADLSGKRVLVRADFNVPLDGDGKITDDTRIRAALPTIQDLTSKGAKVILASHFGRPKGQVNESMRLTPVAARLSELLGQAVTKCDDCIGDEVAAKVGALQNGQVALLENVRFHSGEEANDPEFARQLASVADLYVNDAFGTAHRAHASTEGVTHHLSPSVAGYLIEKELKYLQAAI 187          
BLAST of FC899927 vs. ExPASy Swiss-Prot
Match: PGK_SYNPW (Phosphoglycerate kinase OS=Synechococcus sp. (strain WH7803) GN=pgk PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 3.498e-62
Identity = 122/187 (65.24%), Postives = 144/187 (77.01%), Query Frame = 3
Query:  246 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAV 803
            MAK+S+  L+  DL GK+V VR D NVPL+D   ITDDTRIRAA+PTI  LI  GAKVILS+H GRPKG V     L P+  RLSELLG  V K D CIGP+ E  V ++ +G V+LLENVRF+ EEEKN+  FA+KLA LA++YVNDAFG AHRAHASTEGVTK+LKP+VAGFL++KEL YL GAV
Sbjct:    1 MAKRSLASLNAGDLSGKRVLVRVDFNVPLNDAGAITDDTRIRAALPTINDLIGKGAKVILSAHFGRPKGQVNDAMRLTPVAARLSELLGKPVAKTDSCIGPDAEAKVGAMADGDVVLLENVRFFAEEEKNEAGFAEKLAGLAEVYVNDAFGAAHRAHASTEGVTKFLKPAVAGFLMEKELQYLQGAV 187          
The following BLAST results are available for this feature:
BLAST of FC899927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_NOSP72.341e-6668.82Phosphoglycerate kinase OS=Nostoc punctiforme (str... [more]
PGK_GLOVI5.765e-6569.78Phosphoglycerate kinase OS=Gloeobacter violaceus G... [more]
PGK_CYAP42.861e-6466.67Phosphoglycerate kinase OS=Cyanothece sp. (strain ... [more]
PGK_TRIEI5.396e-6367.38Phosphoglycerate kinase OS=Trichodesmium erythraeu... [more]
PGK_PROMA9.205e-6366.31Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_SYNS31.202e-6265.78Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_SYNSC1.570e-6265.78Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_SYNS92.678e-6265.24Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_ACAM12.678e-6265.78Phosphoglycerate kinase OS=Acaryochloris marina (s... [more]
PGK_SYNPW3.498e-6265.24Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA92AG12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA92AG12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC899927 ID=FC899927; Name=FC899927; organism=Citrus clementina; type=EST; length=807bp
TTGCGCCTTTACTACGCCCCTCCACTCCCGCCATATCAATGGCTTCAGCC
ACCGCTCCCACTACTTTCTCTCTCGTCAAAACCGCCGCAAGTTCATCCCT
TTCTTCCCCACGCGCCTCCTTCCTGCGCATGCCCACTTCAGCATCCCGCA
GGCTGGGGTTCTCCGCAGCCGACCCGCTGCTGACCTGCCATGTGGCGTCG
AGGCTGAGCTCGATTAAGACGAAGGGCACTCGTGCGGTGGTGTCGATGGC
GAAGAAGAGCGTGGGGGAGTTGAGTGGAGCTGATTTGAAAGGGAAGAAGG
TGTTTGTAAGAGCTGACTTGAATGTGCCTTTGGATGATAATCAGAACATT
ACTGATGATACTAGAATCAGAGCTGCTGTTCCCACCATCAAGCATTTGAT
TCAAAATGGAGCTAAAGTCATTCTTTCTAGCCACTTGGGAAGACCAAAGG
GTGTTACTCCGAAATTCAGTTTGGCTCCTCTTGTGCCTCGTCTTTCTGAA
CTCCTGGGCATTCAGGTTGTGAAGGCTGATGACTGCATTGGTCCAGAGGT
AGAAAAGCTTGTAGCCTCACTTCCTGAAGGCGGTGTTCTTCTTCTTGAAA
ACGTGAGGTTCTACAAAGAGGAGGAAAAAAACGATCCTGAGTTTGCCAAG
AAGCTTGCCTCTTTGGCAGATCTCTATGTCAATGATGCTTTTGGGACCGC
TCACAGAGCCCATGCCTCAACTGAGGGAGTCACAAAATATTTGAAGCCTT
CTGTTGCTGGTTTCCTCTTGCAGAAGGAACTGGACTACCTTGTTGGGGCG
GTTTCAA
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