FC899927

Overview
NameFC899927
Unique NameFC899927
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length807
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC899927 vs. ExPASy Swiss-Prot
Match: PGK_ACIBT (Phosphoglycerate kinase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=pgk PE=3 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.612e-33
Identity = 89/177 (50.28%), Postives = 115/177 (64.97%), Query Frame = 3 
Query:  270 LSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPK--FSLAPLVPRLSELLGIQVVKADDCI-GPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYL 791
            ++  +L GK+V +R DLNVP+  N  IT D R+RAA+PTIK  ++ GA V++ SHLGRP    PK   SLA +   L+E LG +V    D + G EVE        G V+LLENVRF   E+KN+PE A+K A+L D++V DAFGTAHRA ASTEGV ++   + AG LL  ELD L
Sbjct:    6 MTDLNLAGKRVLIREDLNVPVK-NGVITSDARLRAALPTIKAALEKGAAVMVFSHLGRPVEGEPKPEQSLALVAAYLTEALGQEVKLFTDYLDGVEVEA-------GQVVLLENVRFNPGEKKNNPELAQKYAALCDVFVMDAFGTAHRAEASTEGVARFAPVAAAGPLLAAELDAL 174
[Close]
BLAST of FC899927 vs. ExPASy Swiss-Prot
Match: PGK_XANOP (Phosphoglycerate kinase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=pgk PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.411e-33
Identity = 84/184 (45.65%), Postives = 114/184 (61.96%), Query Frame = 3 
Query:  258 SVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPK--GVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAV 803
            S+  ++  DL GK+V +R DLNVP+D+ Q IT + RI A+VPTIK  ++ GA V+++SHLGRPK    T + SLAP+  RL+ LLG+ V    D +          +  G V+LLEN R    E K+D   A+K A+L D++V DAFGTAHRA AST GV ++   +  G LL  ELD L  A+
Sbjct:    2 SIVRMTDLDLSGKRVLIRQDLNVPIDNGQ-ITSEQRITASVPTIKLALEKGAAVMVTSHLGRPKEGSWTEEDSLAPVATRLAALLGVDVPLVRDWVDG------VKVAPGQVVLLENCRMNVGEGKDDQTLARKYAALCDVFVMDAFGTAHRAQASTHGVIRFAPVAAGGPLLMAELDALAKAL 178
[Close]
BLAST of FC899927 vs. ExPASy Swiss-Prot
Match: PGK_XANC5 (Phosphoglycerate kinase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=pgk PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.411e-33
Identity = 84/184 (45.65%), Postives = 114/184 (61.96%), Query Frame = 3 
Query:  258 SVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPK--GVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAV 803
            S+  ++  DL GK+V +R DLNVP+D+ Q IT + RI A+VPTIK  ++ GA V+++SHLGRPK    T + SLAP+  RL+ LLG+ V    D +          +  G V+LLEN R    E K+D   A+K A+L D++V DAFGTAHRA AST GV ++   +  G LL  ELD L  A+
Sbjct:    2 SIVRMTDLDLSGKRVLIRQDLNVPIDNGQ-ITSEQRITASVPTIKLALEKGAAVMVTSHLGRPKEGSWTEEDSLAPVATRLAALLGVDVPLVRDWVDG------VDVAPGQVVLLENCRMNVGEGKDDETLARKYAALCDVFVMDAFGTAHRAQASTHGVIRFAPVAAGGPLLMAELDALAKAL 178
[Close]
BLAST of FC899927 vs. ExPASy Swiss-Prot
Match: PGK_SODGM (Phosphoglycerate kinase OS=Sodalis glossinidius (strain morsitans) GN=pgk PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.411e-33
Identity = 83/180 (46.11%), Postives = 117/180 (65.00%), Query Frame = 3 
Query:  258 SVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG--VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYL 791
            +V +++  DL GK+VF+R+DLNVP+ D + +T D RIRA++PTI+  ++ GA+V+++SHLGRP       +FSL P+V  L   L   V  A D +          + EG +++LENVRF K E+K+D   AKK A+L D++V DAFGTAHRA AST GV K+   + AG LL  EL+ L
Sbjct:    2 AVIKMTDLDLAGKRVFIRSDLNVPVKDGK-VTSDARIRASLPTIEDSLKQGARVMVTSHLGRPTEGEYNAEFSLQPVVDYLENKLSAPVRLAKDYLDG------VDVAEGELVVLENVRFNKGEKKDDEALAKKYAALCDVFVMDAFGTAHRAQASTHGVGKFAAVACAGPLLFNELEAL 174
[Close]
BLAST of FC899927 vs. ExPASy Swiss-Prot
Match: PGK_SERP5 (Phosphoglycerate kinase OS=Serratia proteamaculans (strain 568) GN=pgk PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.411e-33
Identity = 85/180 (47.22%), Postives = 116/180 (64.44%), Query Frame = 3 
Query:  258 SVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG--VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYL 791
            SV  +S  DL GK+V +R+DLNVP+ D + +T D RIRA++PTI+  ++ GA+V+++SHLGRP       +FSL P+V  L E L   V  A D +          + EG +++LENVRF K E+K+D   +KK A+L D+YV DAFGTAHRA AST GV K+   + AG LL  EL+ L
Sbjct:    2 SVINMSDLDLAGKRVLIRSDLNVPVKDGK-VTSDARIRASLPTIEAALKQGARVMVTSHLGRPTEGEYNEEFSLLPVVNYLKEHLKNPVRLAKDYLEG------VDVAEGELVVLENVRFNKGEKKDDETLSKKYAALCDVYVMDAFGTAHRAQASTHGVGKFAPVACAGPLLSAELEAL 174
[Close]
BLAST of FC899927 vs. ExPASy Swiss-Prot
Match: PGK_SALTY (Phosphoglycerate kinase OS=Salmonella typhimurium GN=pgk PE=3 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 3.411e-33
Identity = 83/180 (46.11%), Postives = 117/180 (65.00%), Query Frame = 3 
Query:  258 SVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG--VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYL 791
            SV +++  DL GK+VF+RADLNVP+ + + +T D RIRA++PTI+  ++ GAKV+++SHLGRP       +FSL P+V  L + L   V    D +          + EG +++LENVRF K E+K+D   +KK A+L D++V DAFGTAHRA AST G+ K+   + AG LL  ELD L
Sbjct:    2 SVIKMTDLDLAGKRVFIRADLNVPVKEGK-VTSDARIRASLPTIELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDYLDG------VDVAEGELVVLENVRFNKGEKKDDEALSKKYAALCDVFVMDAFGTAHRAQASTHGIGKFADVACAGPLLAAELDAL 174
[Close]
BLAST of FC899927 vs. ExPASy Swiss-Prot
Match: PGK_SALTI (Phosphoglycerate kinase OS=Salmonella typhi GN=pgk PE=3 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 3.411e-33
Identity = 83/180 (46.11%), Postives = 117/180 (65.00%), Query Frame = 3 
Query:  258 SVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG--VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYL 791
            SV +++  DL GK+VF+RADLNVP+ + + +T D RIRA++PTI+  ++ GAKV+++SHLGRP       +FSL P+V  L + L   V    D +          + EG +++LENVRF K E+K+D   +KK A+L D++V DAFGTAHRA AST G+ K+   + AG LL  ELD L
Sbjct:    2 SVIKMTDLDLAGKRVFIRADLNVPVKEGK-VTSDARIRASLPTIELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDYLDG------VDVAEGELVVLENVRFNKGEKKDDEALSKKYAALCDVFVMDAFGTAHRAQASTHGIGKFADVACAGPLLAAELDAL 174
[Close]
BLAST of FC899927 vs. ExPASy Swiss-Prot
Match: PGK_SALSV (Phosphoglycerate kinase OS=Salmonella schwarzengrund (strain CVM19633) GN=pgk PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.411e-33
Identity = 83/180 (46.11%), Postives = 117/180 (65.00%), Query Frame = 3 
Query:  258 SVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG--VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYL 791
            SV +++  DL GK+VF+RADLNVP+ + + +T D RIRA++PTI+  ++ GAKV+++SHLGRP       +FSL P+V  L + L   V    D +          + EG +++LENVRF K E+K+D   +KK A+L D++V DAFGTAHRA AST G+ K+   + AG LL  ELD L
Sbjct:    2 SVIKMTDLDLAGKRVFIRADLNVPVKEGK-VTSDARIRASLPTIELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDYLDG------VDVAEGELVVLENVRFNKGEKKDDEALSKKYAALCDVFVMDAFGTAHRAQASTHGIGKFADVACAGPLLAAELDAL 174
[Close]
BLAST of FC899927 vs. ExPASy Swiss-Prot
Match: PGK_SALPK (Phosphoglycerate kinase OS=Salmonella paratyphi A (strain AKU_12601) GN=pgk PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.411e-33
Identity = 83/180 (46.11%), Postives = 117/180 (65.00%), Query Frame = 3 
Query:  258 SVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG--VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYL 791
            SV +++  DL GK+VF+RADLNVP+ + + +T D RIRA++PTI+  ++ GAKV+++SHLGRP       +FSL P+V  L + L   V    D +          + EG +++LENVRF K E+K+D   +KK A+L D++V DAFGTAHRA AST G+ K+   + AG LL  ELD L
Sbjct:    2 SVIKMTDLDLAGKRVFIRADLNVPVKEGK-VTSDARIRASLPTIELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDYLDG------VDVAEGELVVLENVRFNKGEKKDDEALSKKYAALCDVFVMDAFGTAHRAQASTHGIGKFADVACAGPLLAAELDAL 174
[Close]
BLAST of FC899927 vs. ExPASy Swiss-Prot
Match: PGK_SALPB (Phosphoglycerate kinase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=pgk PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.411e-33
Identity = 83/180 (46.11%), Postives = 117/180 (65.00%), Query Frame = 3 
Query:  258 SVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG--VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYL 791
            SV +++  DL GK+VF+RADLNVP+ + + +T D RIRA++PTI+  ++ GAKV+++SHLGRP       +FSL P+V  L + L   V    D +          + EG +++LENVRF K E+K+D   +KK A+L D++V DAFGTAHRA AST G+ K+   + AG LL  ELD L
Sbjct:    2 SVIKMTDLDLAGKRVFIRADLNVPVKEGK-VTSDARIRASLPTIELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDYLDG------VDVAEGELVVLENVRFNKGEKKDDEALSKKYAALCDVFVMDAFGTAHRAQASTHGIGKFADVACAGPLLAAELDAL 174
The following BLAST results are available for this feature:
BLAST of FC899927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_ACIBT2.612e-3350.28Phosphoglycerate kinase OS=Acinetobacter baumannii... [more]
PGK_XANOP3.411e-3345.65Phosphoglycerate kinase OS=Xanthomonas oryzae pv. ... [more]
PGK_XANC53.411e-3345.65Phosphoglycerate kinase OS=Xanthomonas campestris ... [more]
PGK_SODGM3.411e-3346.11Phosphoglycerate kinase OS=Sodalis glossinidius (s... [more]
PGK_SERP53.411e-3347.22Phosphoglycerate kinase OS=Serratia proteamaculans... [more]
PGK_SALTY3.411e-3346.11Phosphoglycerate kinase OS=Salmonella typhimurium ... [more]
PGK_SALTI3.411e-3346.11Phosphoglycerate kinase OS=Salmonella typhi GN=pgk... [more]
PGK_SALSV3.411e-3346.11Phosphoglycerate kinase OS=Salmonella schwarzengru... [more]
PGK_SALPK3.411e-3346.11Phosphoglycerate kinase OS=Salmonella paratyphi A ... [more]
PGK_SALPB3.411e-3346.11Phosphoglycerate kinase OS=Salmonella paratyphi B ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA92AG12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA92AG12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC899927 ID=FC899927; Name=FC899927; organism=Citrus clementina; type=EST; length=807bp
TTGCGCCTTTACTACGCCCCTCCACTCCCGCCATATCAATGGCTTCAGCC
ACCGCTCCCACTACTTTCTCTCTCGTCAAAACCGCCGCAAGTTCATCCCT
TTCTTCCCCACGCGCCTCCTTCCTGCGCATGCCCACTTCAGCATCCCGCA
GGCTGGGGTTCTCCGCAGCCGACCCGCTGCTGACCTGCCATGTGGCGTCG
AGGCTGAGCTCGATTAAGACGAAGGGCACTCGTGCGGTGGTGTCGATGGC
GAAGAAGAGCGTGGGGGAGTTGAGTGGAGCTGATTTGAAAGGGAAGAAGG
TGTTTGTAAGAGCTGACTTGAATGTGCCTTTGGATGATAATCAGAACATT
ACTGATGATACTAGAATCAGAGCTGCTGTTCCCACCATCAAGCATTTGAT
TCAAAATGGAGCTAAAGTCATTCTTTCTAGCCACTTGGGAAGACCAAAGG
GTGTTACTCCGAAATTCAGTTTGGCTCCTCTTGTGCCTCGTCTTTCTGAA
CTCCTGGGCATTCAGGTTGTGAAGGCTGATGACTGCATTGGTCCAGAGGT
AGAAAAGCTTGTAGCCTCACTTCCTGAAGGCGGTGTTCTTCTTCTTGAAA
ACGTGAGGTTCTACAAAGAGGAGGAAAAAAACGATCCTGAGTTTGCCAAG
AAGCTTGCCTCTTTGGCAGATCTCTATGTCAATGATGCTTTTGGGACCGC
TCACAGAGCCCATGCCTCAACTGAGGGAGTCACAAAATATTTGAAGCCTT
CTGTTGCTGGTTTCCTCTTGCAGAAGGAACTGGACTACCTTGTTGGGGCG
GTTTCAA
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