FC899927

Overview
NameFC899927
Unique NameFC899927
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length807
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC899927 vs. ExPASy Swiss-Prot
Match: PGK_ANADE (Phosphoglycerate kinase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=pgk PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.090e-55
Identity = 110/177 (62.15%), Postives = 134/177 (75.71%), Query Frame = 3
Query:  270 LSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTP---KFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYL 791
            +   DL GK+VF+R D NVPLD    +TDD RIRAA+PTI+H IQ  AKVIL+SHLGRPKG      K +L P   RLSELL   V+ ADDC+G  V+KLV  L +G VLLLEN+RF+ EEEKND  FA++LASLAD++VNDAFGTAHRAHAST G+ K++K   AGFL+QKE++YL
Sbjct:    6 IDALDLAGKRVFIRVDFNVPLDPQGKVTDDARIRAALPTIRHAIQAKAKVILASHLGRPKGKPDDRTKLTLEPAAVRLSELLSQDVILADDCVGDGVKKLVRDLKDGHVLLLENLRFHPEEEKNDEAFARELASLADVWVNDAFGTAHRAHASTAGMAKFVKEKAAGFLVQKEVEYL 182          
BLAST of FC899927 vs. ExPASy Swiss-Prot
Match: PGK_EXIS2 (Phosphoglycerate kinase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=pgk PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.859e-55
Identity = 112/188 (59.57%), Postives = 143/188 (76.06%), Query Frame = 3
Query:  246 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGV-TPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVS 806
            M KKS+ ++   D+KGK+VF R D NVPL+D + ITDDTRIRAA+PTIKHL+  GAKVIL+SH+GRPKG   P+FSLAP+V RLSELLG  +   ++  GP  E+ V+ L EG V++LENVRFY  E KNDPE A+  A LAD++VNDAFG AHRAHASTEG+  +++ +VAG L++KEL  L  A+S
Sbjct:    1 MNKKSIRDI---DVKGKRVFTRVDFNVPLEDGK-ITDDTRIRAALPTIKHLVDGGAKVILASHMGRPKGEKNPEFSLAPVVARLSELLGKDIKLVEEAYGPVAEEAVSKLEEGDVIVLENVRFYPGETKNDPELAEGFAKLADVFVNDAFGAAHRAHASTEGIAHHVETAVAGLLIEKELQVLGKALS 184          
BLAST of FC899927 vs. ExPASy Swiss-Prot
Match: PGK_CHLTE (Phosphoglycerate kinase OS=Chlorobium tepidum GN=pgk PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.428e-55
Identity = 108/188 (57.45%), Postives = 147/188 (78.19%), Query Frame = 3
Query:  246 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVS 806
            M KK++ ++S   L+GK+V +R D NVPLD ++NITD+ RI  A+P+I+ +I NG ++IL SHLGRPKG V P FSL+P+  RLSELL   V  A DCIG EV + V +L +G VL+LEN+RF+ EEE NDP+FA++LASL ++YVNDAFGTAHRAHASTEG+T +++ +VAG+L++KEL YL  A++
Sbjct:    1 MQKKTLSDIS---LQGKRVLMRVDFNVPLDQDRNITDEKRIVEALPSIRKVIDNGGRLILMSHLGRPKGKVNPAFSLSPVAKRLSELLDCPVTMAGDCIGTEVMQQVLALQDGDVLMLENLRFHPEEEANDPDFARELASLGEIYVNDAFGTAHRAHASTEGITHFMQTAVAGYLIEKELRYLGTALN 185          
BLAST of FC899927 vs. ExPASy Swiss-Prot
Match: PGK_ANASK (Phosphoglycerate kinase OS=Anaeromyxobacter sp. (strain K) GN=pgk PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.428e-55
Identity = 109/177 (61.58%), Postives = 134/177 (75.71%), Query Frame = 3
Query:  270 LSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTP---KFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYL 791
            +   DL GK+VF+R D NVPLD    +TDD RIRAA+PTI+H IQ  AKVIL+SHLGRPKG      K +L P   RLSELL   V+ ADDC+G  V+KLV  L +G VLLLEN+RF+ EEEKND  FA++LASLAD++VNDAFGTAHRAHAST G+ +++K   AGFL+QKE++YL
Sbjct:    6 IDALDLAGKRVFIRVDFNVPLDPQGRVTDDARIRAALPTIRHAIQAKAKVILASHLGRPKGKPDDRQKLTLEPAAVRLSELLSQDVILADDCVGDGVKKLVRDLKDGHVLLLENLRFHPEEEKNDEAFARELASLADVWVNDAFGTAHRAHASTAGMARFVKEKAAGFLVQKEVEYL 182          
BLAST of FC899927 vs. ExPASy Swiss-Prot
Match: PGK_BACCN (Phosphoglycerate kinase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=pgk PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 5.409e-55
Identity = 113/188 (60.11%), Postives = 146/188 (77.66%), Query Frame = 3
Query:  246 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVS 806
            M KKS+ ++   DLKGK+VF R D NVP+ D + ITD+TRIRAA+PTI++L++ GAKVIL+SHLGRPKG V  +  L P+  RL ELLG  V KAD+  GP V+++VA++ EG +L+LENVRFY  EEKND E AK+ A+LAD++VNDAFG AHRAHAST G+  YL P+VAGFL++KEL+ L  A+S
Sbjct:    1 MNKKSIRDV---DLKGKRVFCRVDFNVPMKDGK-ITDETRIRAALPTIQYLVEQGAKVILASHLGRPKGQVVEEMRLTPVAVRLGELLGKDVKKADEAFGPAVQEMVAAMNEGDILVLENVRFYAGEEKNDAELAKEFAALADIFVNDAFGAAHRAHASTAGIADYL-PAVAGFLMEKELEVLGKALS 183          
BLAST of FC899927 vs. ExPASy Swiss-Prot
Match: PGK_CHLL2 (Phosphoglycerate kinase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=pgk PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 7.064e-55
Identity = 106/183 (57.92%), Postives = 144/183 (78.69%), Query Frame = 3
Query:  246 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPK-FSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYL 791
            M KK++ +++   ++GK+V +R D NVPLD+ +NITDD RI  A+P+IK +I+NG ++IL SHLGRPKG   + FSL P   RLSELL   V+ A DCIG EV + V +L +G V++LEN+RF+ EEE NDP+FAK+LASL ++YVNDAFGTAHRAHASTEG+T+Y++ +VAG+L++KEL YL
Sbjct:    1 MQKKTLSDIT---IQGKRVLMRVDFNVPLDEEKNITDDKRIVEALPSIKKIIENGGRLILMSHLGRPKGKPNQDFSLTPAAERLSELLDCPVIMAGDCIGTEVMQQVLALQDGEVIMLENLRFHPEEEANDPDFAKELASLGEIYVNDAFGTAHRAHASTEGITRYVQTAVAGYLIEKELMYL 180          
BLAST of FC899927 vs. ExPASy Swiss-Prot
Match: PGK_ANAD2 (Phosphoglycerate kinase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=pgk PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 7.064e-55
Identity = 108/177 (61.02%), Postives = 134/177 (75.71%), Query Frame = 3
Query:  270 LSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTP---KFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYL 791
            +   +L GK+VF+R D NVPLD    +TDD RIRAA+PTI+H IQ  AKVIL+SHLGRPKG      K +L P   RLSELL   V+ ADDC+G  V+KLV  L +G VLLLEN+RF+ EEEKND  FA++LASLAD++VNDAFGTAHRAHAST G+ +++K   AGFL+QKE++YL
Sbjct:    6 IDALELAGKRVFIRVDFNVPLDPQGRVTDDARIRAALPTIRHAIQAKAKVILASHLGRPKGKPEDRQKLTLEPAAVRLSELLSQDVILADDCVGDGVKKLVRDLKDGHVLLLENLRFHPEEEKNDEAFARELASLADVWVNDAFGTAHRAHASTAGMARFVKEKAAGFLVQKEVEYL 182          
BLAST of FC899927 vs. ExPASy Swiss-Prot
Match: PGK_CHLPB (Phosphoglycerate kinase OS=Chlorobium phaeobacteroides (strain BS1) GN=pgk PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.684e-54
Identity = 107/188 (56.91%), Postives = 144/188 (76.60%), Query Frame = 3
Query:  246 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVS 806
            M KKS+ ++S    KG +V +R D NVPLD++ +IT+D RI  A+P+I  +I++G ++IL SHLGRPKG V P+ SL P+  RLSELL   VV A DCIG E  +   +L +G ++LLEN+RF+ EEEKNDPEFA++LAS+ ++YVNDAFGTAHRAHASTEG+  Y++PSVAGFL++KEL YL  A++
Sbjct:    1 MEKKSLYDIS---CKGSRVLMRVDFNVPLDEHAHITNDKRIIEALPSIHKIIEDGGRLILMSHLGRPKGKVVPELSLEPVAKRLSELLDTSVVMAGDCIGTEAMQQALALQDGEIMLLENLRFHPEEEKNDPEFARELASMGEIYVNDAFGTAHRAHASTEGICHYVQPSVAGFLIEKELKYLGQALN 185          
BLAST of FC899927 vs. ExPASy Swiss-Prot
Match: PGK_BACC1 (Phosphoglycerate kinase OS=Bacillus cereus (strain ATCC 10987) GN=pgk PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.506e-54
Identity = 112/188 (59.57%), Postives = 145/188 (77.13%), Query Frame = 3
Query:  246 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVS 806
            M KKS+ ++   DLKGK+VF R D NVP+ + + ITD+TRIRAA+PTI++L++ GAKVIL+SHLGRPKG V  +  L P+  RL ELLG  V KAD+  GP V+++VA++ EG VL+LENVRFY  EEKND E AK+ A+LAD++VNDAFG AHRAHAST G+  YL P+V+G L++KELD L  A+S
Sbjct:    1 MNKKSIRDV---DLKGKRVFCRVDFNVPMKEGK-ITDETRIRAALPTIQYLVEQGAKVILASHLGRPKGQVVEEMRLTPVAARLGELLGKDVKKADEAFGPAVQEMVAAMNEGDVLVLENVRFYAGEEKNDAELAKEFAALADIFVNDAFGAAHRAHASTAGIADYL-PAVSGLLMEKELDVLGKALS 183          
BLAST of FC899927 vs. ExPASy Swiss-Prot
Match: PGK_CHLCH (Phosphoglycerate kinase OS=Chlorobium chlorochromatii (strain CaD3) GN=pgk PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 5.980e-54
Identity = 107/183 (58.47%), Postives = 143/183 (78.14%), Query Frame = 3
Query:  246 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYL 791
            M KK++ +++    +GK+V +R D NVPLD+N+NITDD RI  ++P+I+ +I+ G ++IL SHLGRPKG V  +FSLAP+  RLSELL   V  A DCIG EV + V +L +G VLLLEN+RF+ EEE ND +FAK+LASL ++YVNDAFGTAHRAHASTEG+T Y++ +VAGFL+++EL YL
Sbjct:    1 MEKKTLSDIA---TQGKRVLMRVDFNVPLDENKNITDDKRIVESLPSIRKVIEEGGRLILMSHLGRPKGKVNAEFSLAPVAARLSELLDCPVGMAKDCIGTEVMQQVLALQDGEVLLLENLRFHAEEEANDADFAKELASLGEIYVNDAFGTAHRAHASTEGITHYVQTAVAGFLIERELRYL 180          
The following BLAST results are available for this feature:
BLAST of FC899927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_ANADE1.090e-5562.15Phosphoglycerate kinase OS=Anaeromyxobacter dehalo... [more]
PGK_EXIS21.859e-5559.57Phosphoglycerate kinase OS=Exiguobacterium sibiric... [more]
PGK_CHLTE2.428e-5557.45Phosphoglycerate kinase OS=Chlorobium tepidum GN=p... [more]
PGK_ANASK2.428e-5561.58Phosphoglycerate kinase OS=Anaeromyxobacter sp. (s... [more]
PGK_BACCN5.409e-5560.11Phosphoglycerate kinase OS=Bacillus cereus subsp. ... [more]
PGK_CHLL27.064e-5557.92Phosphoglycerate kinase OS=Chlorobium limicola (st... [more]
PGK_ANAD27.064e-5561.02Phosphoglycerate kinase OS=Anaeromyxobacter dehalo... [more]
PGK_CHLPB2.684e-5456.91Phosphoglycerate kinase OS=Chlorobium phaeobactero... [more]
PGK_BACC13.506e-5459.57Phosphoglycerate kinase OS=Bacillus cereus (strain... [more]
PGK_CHLCH5.980e-5458.47Phosphoglycerate kinase OS=Chlorobium chlorochroma... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA92AG12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA92AG12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC899927 ID=FC899927; Name=FC899927; organism=Citrus clementina; type=EST; length=807bp
TTGCGCCTTTACTACGCCCCTCCACTCCCGCCATATCAATGGCTTCAGCC
ACCGCTCCCACTACTTTCTCTCTCGTCAAAACCGCCGCAAGTTCATCCCT
TTCTTCCCCACGCGCCTCCTTCCTGCGCATGCCCACTTCAGCATCCCGCA
GGCTGGGGTTCTCCGCAGCCGACCCGCTGCTGACCTGCCATGTGGCGTCG
AGGCTGAGCTCGATTAAGACGAAGGGCACTCGTGCGGTGGTGTCGATGGC
GAAGAAGAGCGTGGGGGAGTTGAGTGGAGCTGATTTGAAAGGGAAGAAGG
TGTTTGTAAGAGCTGACTTGAATGTGCCTTTGGATGATAATCAGAACATT
ACTGATGATACTAGAATCAGAGCTGCTGTTCCCACCATCAAGCATTTGAT
TCAAAATGGAGCTAAAGTCATTCTTTCTAGCCACTTGGGAAGACCAAAGG
GTGTTACTCCGAAATTCAGTTTGGCTCCTCTTGTGCCTCGTCTTTCTGAA
CTCCTGGGCATTCAGGTTGTGAAGGCTGATGACTGCATTGGTCCAGAGGT
AGAAAAGCTTGTAGCCTCACTTCCTGAAGGCGGTGTTCTTCTTCTTGAAA
ACGTGAGGTTCTACAAAGAGGAGGAAAAAAACGATCCTGAGTTTGCCAAG
AAGCTTGCCTCTTTGGCAGATCTCTATGTCAATGATGCTTTTGGGACCGC
TCACAGAGCCCATGCCTCAACTGAGGGAGTCACAAAATATTTGAAGCCTT
CTGTTGCTGGTTTCCTCTTGCAGAAGGAACTGGACTACCTTGTTGGGGCG
GTTTCAA
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