FC899928

Overview
NameFC899928
Unique NameFC899928
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length835
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_SERP5 (Probable ubiquinone biosynthesis protein ubiB OS=Serratia proteamaculans (strain 568) GN=ubiB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.406e-14
Identity = 43/126 (34.13%), Postives = 67/126 (53.17%), Query Frame = 3
Query:  456 PLILLRRVFQVGTTFGWWFGSRFVDELMERSDQMFPVRAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQAR 833
            P + L    +VG    +W  +R  D+ +             LR  L ELGP ++K  Q +S+R DL PP   D+L+LLQD++ PF   +A   IE  +G P++  F +   + +A+AS+ QV+ AR
Sbjct:   26 PQMRLTLPLRVGRRLLFWMPNRHADKPL----------GERLRLALQELGPVWIKFGQMMSTRRDLFPPQIADQLTLLQDRVAPFDGALARKHIELAMGGPLETWFDDFDQQALASASIAQVHTAR 141          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_VIBC3 (Probable ubiquinone biosynthesis protein ubiB OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=ubiB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.366e-14
Identity = 37/85 (43.53%), Postives = 55/85 (64.71%), Query Frame = 3
Query:  579 LRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQAR 833
            LR  L ELGP ++K  Q +S+R DL PP   D L++LQD++ PF    A   IE+ELG P++  F +   +P+A+AS+ QV+ A+
Sbjct:   57 LRLALQELGPVWIKFGQMMSTRRDLFPPYIADPLAMLQDKVAPFDGLQAKQLIEEELGAPLETWFDDFDIKPLASASIAQVHTAK 141          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_ENT38 (Probable ubiquinone biosynthesis protein ubiB OS=Enterobacter sp. (strain 638) GN=ubiB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.366e-14
Identity = 45/127 (35.43%), Postives = 70/127 (55.12%), Query Frame = 3
Query:  456 PLILLRRVFQVGTTFGWWFGSRFVDELMERSDQMFPVRAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELG-LPIDELFSEISPEPVAAASLGQVYQAR 833
            PL + RR+        +W  +R  D+L+             LR  L ELGP ++K  Q +S+R DL PP   D+L+LLQD++ PF    A   IE+ +G +P++  F +   +P+A+AS+ QV+ AR
Sbjct:   33 PLRIWRRML-------FWMPNRHKDKLL----------GERLRLALQELGPVWIKFGQMLSTRRDLFPPQIADQLALLQDRVAPFDGARAKQQIEEAMGNIPVETWFDDFDIKPLASASIAQVHTAR 142          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_PHOPR (Probable ubiquinone biosynthesis protein ubiB OS=Photobacterium profundum GN=ubiB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.093e-13
Identity = 38/84 (45.24%), Postives = 53/84 (63.10%), Query Frame = 3
Query:  579 LRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQA 830
            LR  L ELGP ++K  Q +S+R DL PP   D+L+LLQDQ+ PF   +A   +E  LG PI+  F +    P+A+AS+ QV+ A
Sbjct:   58 LRLALQELGPVWIKFGQMMSTRRDLFPPHIADQLALLQDQVEPFDGNLAKEHMELSLGGPIETWFDDFDETPLASASIAQVHTA 141          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_ENTS8 (Probable ubiquinone biosynthesis protein ubiB OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=ubiB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.093e-13
Identity = 49/141 (34.75%), Postives = 75/141 (53.19%), Query Frame = 3
Query:  468 LRRVFQVGTTFGWWFGSRFVDELMERSDQMFPVR------------------AAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELG-LPIDELFSEISPEPVAAASLGQVYQAR 833
            +RR++ +  TF     S  +DEL+ R     P+R                     LR  L ELGP ++K  Q +S+R DL PP   D+L+LLQD++ PF  ++A   IE+ +G  P++E F +    P+A+AS+ QV+ AR
Sbjct:    6 IRRLYFIIKTFL----SYGLDELIPRMRLTLPLRIWRRGLFWMPNRHKDLELGTRLRLALQELGPVWIKFGQMLSTRRDLFPPVIADQLALLQDRVAPFDGKLAKQQIEKAMGDRPVEEWFDDFDITPLASASIAQVHTAR 142          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_ECOUT (Probable ubiquinone biosynthesis protein ubiB OS=Escherichia coli (strain UTI89 / UPEC) GN=ubiB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.093e-13
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = 3
Query:  579 LRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQEL-GLPIDELFSEISPEPVAAASLGQVYQAR 833
            LR  L ELGP ++K  Q +S+R DL PP   D+L+LLQD++ PF  ++A   IE  + GLP++  F +   +P+A+AS+ QV+ AR
Sbjct:   57 LRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDKVAPFDGKLAKQQIEAAMGGLPVEAWFDDFEIKPLASASIAQVHTAR 142          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_ECOSM (Probable ubiquinone biosynthesis protein ubiB OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=ubiB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.093e-13
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = 3
Query:  579 LRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQEL-GLPIDELFSEISPEPVAAASLGQVYQAR 833
            LR  L ELGP ++K  Q +S+R DL PP   D+L+LLQD++ PF  ++A   IE  + GLP++  F +   +P+A+AS+ QV+ AR
Sbjct:   57 LRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDKVAPFDGKLAKQQIEAAMGGLPVEAWFDDFEIKPLASASIAQVHTAR 142          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_ECOLU (Probable ubiquinone biosynthesis protein ubiB OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=ubiB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.093e-13
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = 3
Query:  579 LRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQEL-GLPIDELFSEISPEPVAAASLGQVYQAR 833
            LR  L ELGP ++K  Q +S+R DL PP   D+L+LLQD++ PF  ++A   IE  + GLP++  F +   +P+A+AS+ QV+ AR
Sbjct:   57 LRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDKVAPFDGKLAKQQIEAAMGGLPVEAWFDDFEIKPLASASIAQVHTAR 142          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_ECOL6 (Probable ubiquinone biosynthesis protein ubiB OS=Escherichia coli O6 GN=ubiB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.093e-13
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = 3
Query:  579 LRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQEL-GLPIDELFSEISPEPVAAASLGQVYQAR 833
            LR  L ELGP ++K  Q +S+R DL PP   D+L+LLQD++ PF  ++A   IE  + GLP++  F +   +P+A+AS+ QV+ AR
Sbjct:   57 LRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDKVAPFDGKLAKQQIEAAMGGLPVEAWFDDFEIKPLASASIAQVHTAR 142          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_ECOL5 (Probable ubiquinone biosynthesis protein ubiB OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=ubiB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.093e-13
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = 3
Query:  579 LRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQEL-GLPIDELFSEISPEPVAAASLGQVYQAR 833
            LR  L ELGP ++K  Q +S+R DL PP   D+L+LLQD++ PF  ++A   IE  + GLP++  F +   +P+A+AS+ QV+ AR
Sbjct:   57 LRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDKVAPFDGKLAKQQIEAAMGGLPVEAWFDDFEIKPLASASIAQVHTAR 142          
The following BLAST results are available for this feature:
BLAST of FC899928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 167
Match NameE-valueIdentityDescription
UBIB_SERP56.406e-1434.13Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_VIBC38.366e-1443.53Probable ubiquinone biosynthesis protein ubiB OS=V... [more]
UBIB_ENT388.366e-1435.43Probable ubiquinone biosynthesis protein ubiB OS=E... [more]
UBIB_PHOPR1.093e-1345.24Probable ubiquinone biosynthesis protein ubiB OS=P... [more]
UBIB_ENTS81.093e-1334.75Probable ubiquinone biosynthesis protein ubiB OS=E... [more]
UBIB_ECOUT1.093e-1344.19Probable ubiquinone biosynthesis protein ubiB OS=E... [more]
UBIB_ECOSM1.093e-1344.19Probable ubiquinone biosynthesis protein ubiB OS=E... [more]
UBIB_ECOLU1.093e-1344.19Probable ubiquinone biosynthesis protein ubiB OS=E... [more]
UBIB_ECOL61.093e-1344.19Probable ubiquinone biosynthesis protein ubiB OS=E... [more]
UBIB_ECOL51.093e-1344.19Probable ubiquinone biosynthesis protein ubiB OS=E... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA88AF01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA88AF01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC899928 ID=FC899928; Name=FC899928; organism=Citrus clementina; type=EST; length=835bp
AGAAATGTGGATAAAGTATAAAAAGAACCACGAAAAAATTGCCGCCCCGT
TGCCTTACACGTATCTGTCGATTTTTACACTCCCACCAAAACACCTCAGA
GCTTCGCTCTGTCTCGTCCCCTTCTTTCTCGCTGCATTCATATTTCATTT
TAATATTGTTAAATTCATCGCTCCCATTGCATTTCATCACCCGCCGCGCG
TGATTAATGTCAATGTCACTCCTCCTCCTCTTCGCGTCACCGCCAATCCC
CGCCCTTCCCGCCAATCAACAACTTAAAATCTATGGAAAGCCAATAAACC
ACCGGCACCTCAAGTCCTCGCGAGTGTCTGCCACTCGCGACGACGTCGAT
GCGTTCACCGAGAAGTCGAGCTACTTGTTCAAGCTCAGCTCGACCGACGC
CGACTCCATCGTAGAATACGATTTGAGAAAAATCGCTTCCGTTTATAGAA
GAAAGCCGTTGATTTTGCTGCGGCGAGTATTTCAAGTTGGCACGACTTTC
GGATGGTGGTTCGGGTCGCGGTTTGTTGATGAACTAATGGAGCGATCCGA
CCAGATGTTTCCGGTTAGAGCTGCCGAGTTGCGGAAGATATTGGTGGAAC
TCGGTCCAGCGTACGTCAAAATTGCTCAGGCTGTTTCTTCTCGACCTGAT
TTGATACCACCATCATATTTGGATGAGCTCTCTCTGTTGCAAGATCAGAT
AACCCCGTTTTCCTCTGAAGTTGCTTTCAATACAATAGAACAGGAACTTG
GATTACCGATAGATGAGCTTTTCTCTGAAATATCGCCAGAACCTGTAGCA
GCAGCGTCTCTTGGGCAGGTTTATCAAGCTAGACT
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