FC899928

Overview
NameFC899928
Unique NameFC899928
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length835
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC899928_ssr219 microsatellite FC899928_ssr219:219..230. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12498 contig Ccv1_Contig12498:1..832. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_PHOLL (Probable ubiquinone biosynthesis protein ubiB OS=Photorhabdus luminescens subsp. laumondii GN=ubiB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.691e-12
Identity = 43/126 (34.13%), Postives = 65/126 (51.59%), Query Frame = 3
Query:  456 PLILLRRVFQVGTTFGWWFGSRFVDELMERSDQMFPVRAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQAR 833
            P I L    + G    +W  +R  D+ +             LR  L ELGP ++K  Q +S+R DL PP+  D+L+LLQD++  F   +A   IE  LG  ++  F +  P  +A+AS+ QV+ AR
Sbjct:   26 PRIRLTWPLRFGRYLLFWIPNRHKDKSL----------GERLRLALQELGPVWIKFGQMLSTRRDLFPPAIADQLALLQDRVASFDGALARQYIETALGGALETWFDDFEPIALASASIAQVHTAR 141          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_SHEON (Probable ubiquinone biosynthesis protein ubiB OS=Shewanella oneidensis GN=ubiB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.515e-12
Identity = 34/84 (40.48%), Postives = 54/84 (64.29%), Query Frame = 3
Query:  579 LRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQA 830
            L+  + ELGP Y+K+ Q +S+R DL+   +  EL++LQD++ PF   +A   IE EL  PI+  F + +  P+A+AS+ QV+ A
Sbjct:   57 LKLAMQELGPVYIKLGQMLSTRRDLLSDEWATELAMLQDKVPPFDGALARLAIEAELKAPIETFFDDFNETPLASASISQVHTA 140          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_SHESW (Probable ubiquinone biosynthesis protein ubiB OS=Shewanella sp. (strain W3-18-1) GN=ubiB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.023e-11
Identity = 34/84 (40.48%), Postives = 53/84 (63.10%), Query Frame = 3
Query:  579 LRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQA 830
            L+  + ELGP Y+K+ Q +S+R DL+   +  EL++LQD++ PF   +A   IE EL   I+ LF +    P+A+AS+ QV+ A
Sbjct:   57 LKLAMQELGPVYIKLGQMLSTRRDLLSDEWAIELAMLQDKVPPFDGVLARKAIEAELKASIESLFDDFDETPLASASISQVHTA 140          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_SHEPC (Probable ubiquinone biosynthesis protein ubiB OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=ubiB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.023e-11
Identity = 34/84 (40.48%), Postives = 53/84 (63.10%), Query Frame = 3
Query:  579 LRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQA 830
            L+  + ELGP Y+K+ Q +S+R DL+   +  EL++LQD++ PF   +A   IE EL   I+ LF +    P+A+AS+ QV+ A
Sbjct:   57 LKLAMQELGPVYIKLGQMLSTRRDLLSDEWAIELAMLQDKVPPFDGVLARKAIEAELKASIESLFDDFDETPLASASISQVHTA 140          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: Y5520_ARATH (Uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic OS=Arabidopsis thaliana GN=At5g05200 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.278e-11
Identity = 31/85 (36.47%), Postives = 50/85 (58.82%), Query Frame = 3
Query:  579 LRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQAR 833
            LRK+   +G  Y+K+ Q ++S P L PP Y+ E     D+  P   E     +++ELG PI+ ++  + P P+A+AS+ QV+ AR
Sbjct:  129 LRKLFERMGATYIKLGQFIASAPTLFPPEYVKEFQNCFDKAPPVPFEEIRKILQEELGRPIESVYEYVDPTPIASASIAQVHGAR 213          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_HAEPS (Probable ubiquinone biosynthesis protein ubiB OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=ubiB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.886e-11
Identity = 43/126 (34.13%), Postives = 69/126 (54.76%), Query Frame = 3
Query:  456 PLILLRRVFQVGTTFGWWFGSRFVDELMERSDQMFPVRAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQAR 833
            P I L R  + G    +W  +++ +E        F VR   LR  L ELGP ++K+ Q +S+R DL  P   D+L+LLQD +  F  ++A   IE+ LG  +++ F +     +A+AS+ QV+ A+
Sbjct:   26 PDIPLTRGIRCGRKSLFWVKNQYPNE-------PFGVR---LRLALQELGPVWIKLGQMLSTRRDLFEPELADQLALLQDSVEAFDGKLARRLIEEALGDKLEKWFDDFDETALASASIAQVHIAK 141          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: YHG1_CLOPA (Uncharacterized protein in hydrogenase 1 5'region (Fragment) OS=Clostridium pasteurianum PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.076e-11
Identity = 43/131 (32.82%), Postives = 66/131 (50.38%), Query Frame = 3
Query:  438 SVYRRKPLILLRRVFQVGTTFGWWFGSRFVDELMERSDQMFPVRAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQA 830
            SVYR K ++ +            ++G  F+ +     ++  P     LRK   ELGP ++KI Q +S+RPDL+P  Y+ ELS LQ+ + P +     N   +EL   ID  F      P+ +AS+ QV+ A
Sbjct:    2 SVYRLKEIVKVLA----------YYGFGFIVDSKLNGNKKSP---ENLRKAFEELGPTFIKIGQILSTRPDLLPLPYIKELSKLQNNVPPENFIDIENLFFEELSSTIDNTFLYFDKTPIGSASIAQVHDA 119          
The following BLAST results are available for this feature:
BLAST of FC899928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 167
Match NameE-valueIdentityDescription
UBIB_PHOLL2.691e-1234.13Probable ubiquinone biosynthesis protein ubiB OS=P... [more]
UBIB_SHEON3.515e-1240.48Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SHESW1.023e-1140.48Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SHEPC1.023e-1140.48Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
Y5520_ARATH2.278e-1136.47Uncharacterized aarF domain-containing protein kin... [more]
UBIB_HAEPS3.886e-1134.13Probable ubiquinone biosynthesis protein ubiB OS=H... [more]
YHG1_CLOPA5.076e-1132.82Uncharacterized protein in hydrogenase 1 5'region ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA88AF01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA88AF01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC899928 ID=FC899928; Name=FC899928; organism=Citrus clementina; type=EST; length=835bp
AGAAATGTGGATAAAGTATAAAAAGAACCACGAAAAAATTGCCGCCCCGT
TGCCTTACACGTATCTGTCGATTTTTACACTCCCACCAAAACACCTCAGA
GCTTCGCTCTGTCTCGTCCCCTTCTTTCTCGCTGCATTCATATTTCATTT
TAATATTGTTAAATTCATCGCTCCCATTGCATTTCATCACCCGCCGCGCG
TGATTAATGTCAATGTCACTCCTCCTCCTCTTCGCGTCACCGCCAATCCC
CGCCCTTCCCGCCAATCAACAACTTAAAATCTATGGAAAGCCAATAAACC
ACCGGCACCTCAAGTCCTCGCGAGTGTCTGCCACTCGCGACGACGTCGAT
GCGTTCACCGAGAAGTCGAGCTACTTGTTCAAGCTCAGCTCGACCGACGC
CGACTCCATCGTAGAATACGATTTGAGAAAAATCGCTTCCGTTTATAGAA
GAAAGCCGTTGATTTTGCTGCGGCGAGTATTTCAAGTTGGCACGACTTTC
GGATGGTGGTTCGGGTCGCGGTTTGTTGATGAACTAATGGAGCGATCCGA
CCAGATGTTTCCGGTTAGAGCTGCCGAGTTGCGGAAGATATTGGTGGAAC
TCGGTCCAGCGTACGTCAAAATTGCTCAGGCTGTTTCTTCTCGACCTGAT
TTGATACCACCATCATATTTGGATGAGCTCTCTCTGTTGCAAGATCAGAT
AACCCCGTTTTCCTCTGAAGTTGCTTTCAATACAATAGAACAGGAACTTG
GATTACCGATAGATGAGCTTTTCTCTGAAATATCGCCAGAACCTGTAGCA
GCAGCGTCTCTTGGGCAGGTTTATCAAGCTAGACT
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