FC899928

Overview
NameFC899928
Unique NameFC899928
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length835
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_PSEPG (Probable ubiquinone biosynthesis protein ubiB OS=Pseudomonas putida (strain GB-1) GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.167e-15
Identity = 41/89 (46.07%), Postives = 58/89 (65.17%), Query Frame = 3
Query:  567 RAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQAR 833
            R A LR  L +LGP ++K  Q +S+R DL+P    DEL LLQD++ PF  + A   IE++LG  + E+FS    EP+A+AS+ QV+ AR
Sbjct:   56 RGARLRLALQDLGPIFIKFGQLLSTRRDLLPTDIADELMLLQDRVPPFDPQKAVALIEEQLGAKVGEVFSRFDVEPLASASVAQVHAAR 144          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_HAHCH (Probable ubiquinone biosynthesis protein ubiB OS=Hahella chejuensis (strain KCTC 2396) GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.167e-15
Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = 3
Query:  567 RAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQA 830
            R   LR+ L ELGP +VK  Q +S+R DL+P    DEL  LQD++ PF+S++A   IE+ L  P+ ELF++    P+A+AS+ QV+ A
Sbjct:   51 RGERLRRALEELGPIFVKFGQILSTRKDLLPEDLADELKRLQDKVPPFASDMAVRIIEESLKSPVSELFADFQTYPMASASIAQVHAA 138          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_DIAST (Probable ubiquinone biosynthesis protein ubiB OS=Diaphorobacter sp. (strain TPSY) GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.167e-15
Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = 3
Query:  567 RAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQA 830
            R   LR+ L  LGP +VK  Q +S+R DL+PP   DEL+LLQD++ PF  +VA  TIE+    PI E+F     +PVA+AS+ QV+ A
Sbjct:   49 RGQRLREALESLGPIFVKFGQVLSTRRDLMPPDIADELALLQDRVPPFDPDVAIATIERAFRRPIGEVFVSFDRQPVASASIAQVHFA 136          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_ACISJ (Probable ubiquinone biosynthesis protein ubiB OS=Acidovorax sp. (strain JS42) GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.167e-15
Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = 3
Query:  567 RAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQA 830
            R   LR+ L  LGP +VK  Q +S+R DL+PP   DEL+LLQD++ PF  +VA  TIE+    PI E+F     +PVA+AS+ QV+ A
Sbjct:   49 RGQRLREALESLGPIFVKFGQVLSTRRDLMPPDIADELALLQDRVPPFDPDVAIATIERAFRRPIGEVFVSFDRQPVASASIAQVHFA 136          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_PSEFS (Probable ubiquinone biosynthesis protein ubiB OS=Pseudomonas fluorescens (strain SBW25) GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.525e-15
Identity = 40/89 (44.94%), Postives = 59/89 (66.29%), Query Frame = 3
Query:  567 RAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQAR 833
            R A LR  L +LGP ++K  Q +S+R DL+P    DEL LLQD++ PF S+ +   IE++LG  I E+FS    +P+A+AS+ QV+ A+
Sbjct:   55 RGARLRLALQDLGPIFIKFGQILSTRRDLLPEDIADELMLLQDRVPPFDSQQSMKLIEEQLGKKISEVFSRFDVDPLASASVAQVHAAQ 143          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_PSEE4 (Probable ubiquinone biosynthesis protein ubiB OS=Pseudomonas entomophila (strain L48) GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.525e-15
Identity = 41/89 (46.07%), Postives = 58/89 (65.17%), Query Frame = 3
Query:  567 RAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQAR 833
            R A LR  L +LGP ++K  Q +S+R DL+P    DEL LLQD++ PF  + A   IE++LG  + E+FS    EP+A+AS+ QV+ AR
Sbjct:   56 RGARLRLALQDLGPIFIKFGQLLSTRRDLLPTDIADELMLLQDRVPPFDPQHAVALIEEQLGAKVGEVFSRFDVEPLASASVAQVHAAR 144          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_PASMU (Probable ubiquinone biosynthesis protein ubiB OS=Pasteurella multocida GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.525e-15
Identity = 42/98 (42.86%), Postives = 63/98 (64.29%), Query Frame = 3
Query:  540 ERSDQMFPVRAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQAR 833
            +  D+ F +R   LR  L ELGP ++K+ Q +S+R DL PP   DEL+LLQDQ+ PF  ++A   IE+ LG P++  F E +   +A+AS+ QV+ A+
Sbjct:   47 QHKDKTFGLR---LRLALQELGPVWIKLGQMLSTRRDLFPPDIADELALLQDQVDPFDGKIARAQIEKALGAPLETWFDEFNETALASASIAQVHTAK 141          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_KLEP3 (Probable ubiquinone biosynthesis protein ubiB OS=Klebsiella pneumoniae (strain 342) GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.525e-15
Identity = 47/127 (37.01%), Postives = 71/127 (55.91%), Query Frame = 3
Query:  456 PLILLRRVFQVGTTFGWWFGSRFVDELMERSDQMFPVRAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQEL-GLPIDELFSEISPEPVAAASLGQVYQAR 833
            P I L    ++     +W  +R  D+ +             LR  L ELGP ++K  Q +S+R DL PP   D+L+LLQD++ PF  ++A   IE+ + GLP+D  F + S EP+A+AS+ QV+ AR
Sbjct:   26 PKIRLTLPLRIWRRMLFWMPNRHQDQPL----------GTRLRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDRVAPFEGKLAQQQIEKAMGGLPVDAWFDDFSVEPLASASIAQVHTAR 142          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: Y095_SYNY3 (Uncharacterized protein sll0095 OS=Synechocystis sp. (strain PCC 6803) GN=sll0095 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.991e-15
Identity = 44/96 (45.83%), Postives = 63/96 (65.62%), Query Frame = 3
Query:  543 RSDQMFPVRAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQA 830
            RS Q    RA  L + L+ LGP ++KI Q++S+R D+IP  Y++  + LQD++ PF S  A   IEQEL   IDE+F +    P+A+ASLGQV++A
Sbjct:   49 RSAQRRYRRAQWLVQQLLYLGPTFIKIGQSLSTRADIIPAEYIEAFTQLQDRVPPFDSRQAIAVIEQELHGAIDEIFQQFEVTPLASASLGQVHRA 144          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_PSEPF (Probable ubiquinone biosynthesis protein ubiB OS=Pseudomonas fluorescens (strain Pf0-1) GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.991e-15
Identity = 40/89 (44.94%), Postives = 59/89 (66.29%), Query Frame = 3
Query:  567 RAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQAR 833
            R A LR  L +LGP ++K  Q +S+R DL+P    DEL  LQD++ PF S+++   IE++LG  I E+FS    EP+A+AS+ QV+ A+
Sbjct:   55 RGARLRLALQDLGPIFIKFGQILSTRRDLLPEDIADELMRLQDRVPPFDSQLSVKLIEEQLGKKISEVFSRFDVEPLASASVAQVHAAQ 143          
The following BLAST results are available for this feature:
BLAST of FC899928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 167
Match NameE-valueIdentityDescription
UBIB_PSEPG1.167e-1546.07Probable ubiquinone biosynthesis protein ubiB OS=P... [more]
UBIB_HAHCH1.167e-1545.45Probable ubiquinone biosynthesis protein ubiB OS=H... [more]
UBIB_DIAST1.167e-1547.73Probable ubiquinone biosynthesis protein ubiB OS=D... [more]
UBIB_ACISJ1.167e-1547.73Probable ubiquinone biosynthesis protein ubiB OS=A... [more]
UBIB_PSEFS1.525e-1544.94Probable ubiquinone biosynthesis protein ubiB OS=P... [more]
UBIB_PSEE41.525e-1546.07Probable ubiquinone biosynthesis protein ubiB OS=P... [more]
UBIB_PASMU1.525e-1542.86Probable ubiquinone biosynthesis protein ubiB OS=P... [more]
UBIB_KLEP31.525e-1537.01Probable ubiquinone biosynthesis protein ubiB OS=K... [more]
Y095_SYNY31.991e-1545.83Uncharacterized protein sll0095 OS=Synechocystis s... [more]
UBIB_PSEPF1.991e-1544.94Probable ubiquinone biosynthesis protein ubiB OS=P... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA88AF01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA88AF01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC899928 ID=FC899928; Name=FC899928; organism=Citrus clementina; type=EST; length=835bp
AGAAATGTGGATAAAGTATAAAAAGAACCACGAAAAAATTGCCGCCCCGT
TGCCTTACACGTATCTGTCGATTTTTACACTCCCACCAAAACACCTCAGA
GCTTCGCTCTGTCTCGTCCCCTTCTTTCTCGCTGCATTCATATTTCATTT
TAATATTGTTAAATTCATCGCTCCCATTGCATTTCATCACCCGCCGCGCG
TGATTAATGTCAATGTCACTCCTCCTCCTCTTCGCGTCACCGCCAATCCC
CGCCCTTCCCGCCAATCAACAACTTAAAATCTATGGAAAGCCAATAAACC
ACCGGCACCTCAAGTCCTCGCGAGTGTCTGCCACTCGCGACGACGTCGAT
GCGTTCACCGAGAAGTCGAGCTACTTGTTCAAGCTCAGCTCGACCGACGC
CGACTCCATCGTAGAATACGATTTGAGAAAAATCGCTTCCGTTTATAGAA
GAAAGCCGTTGATTTTGCTGCGGCGAGTATTTCAAGTTGGCACGACTTTC
GGATGGTGGTTCGGGTCGCGGTTTGTTGATGAACTAATGGAGCGATCCGA
CCAGATGTTTCCGGTTAGAGCTGCCGAGTTGCGGAAGATATTGGTGGAAC
TCGGTCCAGCGTACGTCAAAATTGCTCAGGCTGTTTCTTCTCGACCTGAT
TTGATACCACCATCATATTTGGATGAGCTCTCTCTGTTGCAAGATCAGAT
AACCCCGTTTTCCTCTGAAGTTGCTTTCAATACAATAGAACAGGAACTTG
GATTACCGATAGATGAGCTTTTCTCTGAAATATCGCCAGAACCTGTAGCA
GCAGCGTCTCTTGGGCAGGTTTATCAAGCTAGACT
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