FC899928

Overview
NameFC899928
Unique NameFC899928
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length835
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC899928_ssr219 microsatellite FC899928_ssr219:219..230. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12498 contig Ccv1_Contig12498:1..832. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_KLEP7 (Probable ubiquinone biosynthesis protein ubiB OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.991e-15
Identity = 41/88 (46.59%), Postives = 60/88 (68.18%), Query Frame = 3
Query:  573 AELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQEL-GLPIDELFSEISPEPVAAASLGQVYQAR 833
            A LR  L ELGP ++K  Q +S+R DL PP   D+L+LLQD++ PF  ++A   IE+ + GLP++  F + S EP+A+AS+ QV+ AR
Sbjct:   55 ARLRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDRVAPFEGKLAQQQIEKAMGGLPVETWFDDFSVEPLASASIAQVHTAR 142          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_BURPS (Probable ubiquinone biosynthesis protein ubiB OS=Burkholderia pseudomallei GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.991e-15
Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = 3
Query:  570 AAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQAR 833
            A  LR+ L  LGP +VK  Q +S+R DL+P  + +EL+ LQDQ+ PF S VA   +E+ LG  ID LF E    PVA+AS+ QV+ A+
Sbjct:   49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGARIDVLFDEFERVPVASASIAQVHFAK 136          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_BURP6 (Probable ubiquinone biosynthesis protein ubiB OS=Burkholderia pseudomallei (strain 668) GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.991e-15
Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = 3
Query:  570 AAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQAR 833
            A  LR+ L  LGP +VK  Q +S+R DL+P  + +EL+ LQDQ+ PF S VA   +E+ LG  ID LF E    PVA+AS+ QV+ A+
Sbjct:   49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGARIDVLFDEFERVPVASASIAQVHFAK 136          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_BURP1 (Probable ubiquinone biosynthesis protein ubiB OS=Burkholderia pseudomallei (strain 1710b) GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.991e-15
Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = 3
Query:  570 AAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQAR 833
            A  LR+ L  LGP +VK  Q +S+R DL+P  + +EL+ LQDQ+ PF S VA   +E+ LG  ID LF E    PVA+AS+ QV+ A+
Sbjct:   49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGARIDVLFDEFERVPVASASIAQVHFAK 136          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_BURP0 (Probable ubiquinone biosynthesis protein ubiB OS=Burkholderia pseudomallei (strain 1106a) GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.991e-15
Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = 3
Query:  570 AAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQAR 833
            A  LR+ L  LGP +VK  Q +S+R DL+P  + +EL+ LQDQ+ PF S VA   +E+ LG  ID LF E    PVA+AS+ QV+ A+
Sbjct:   49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGARIDVLFDEFERVPVASASIAQVHFAK 136          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_BURMS (Probable ubiquinone biosynthesis protein ubiB OS=Burkholderia mallei (strain SAVP1) GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.991e-15
Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = 3
Query:  570 AAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQAR 833
            A  LR+ L  LGP +VK  Q +S+R DL+P  + +EL+ LQDQ+ PF S VA   +E+ LG  ID LF E    PVA+AS+ QV+ A+
Sbjct:   49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGARIDVLFDEFERVPVASASIAQVHFAK 136          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_BURMA (Probable ubiquinone biosynthesis protein ubiB OS=Burkholderia mallei GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.991e-15
Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = 3
Query:  570 AAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQAR 833
            A  LR+ L  LGP +VK  Q +S+R DL+P  + +EL+ LQDQ+ PF S VA   +E+ LG  ID LF E    PVA+AS+ QV+ A+
Sbjct:   49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGARIDVLFDEFERVPVASASIAQVHFAK 136          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_BURM9 (Probable ubiquinone biosynthesis protein ubiB OS=Burkholderia mallei (strain NCTC 10229) GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.991e-15
Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = 3
Query:  570 AAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQAR 833
            A  LR+ L  LGP +VK  Q +S+R DL+P  + +EL+ LQDQ+ PF S VA   +E+ LG  ID LF E    PVA+AS+ QV+ A+
Sbjct:   49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGARIDVLFDEFERVPVASASIAQVHFAK 136          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_BURM7 (Probable ubiquinone biosynthesis protein ubiB OS=Burkholderia mallei (strain NCTC 10247) GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.991e-15
Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = 3
Query:  570 AAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQAR 833
            A  LR+ L  LGP +VK  Q +S+R DL+P  + +EL+ LQDQ+ PF S VA   +E+ LG  ID LF E    PVA+AS+ QV+ A+
Sbjct:   49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGARIDVLFDEFERVPVASASIAQVHFAK 136          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_VIBPA (Probable ubiquinone biosynthesis protein ubiB OS=Vibrio parahaemolyticus GN=ubiB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.601e-15
Identity = 40/85 (47.06%), Postives = 57/85 (67.06%), Query Frame = 3
Query:  579 LRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQAR 833
            LR  L ELGP ++K  Q +S+R DL PP   D L+LLQDQ+ PF  E+A   +E+ LG P++  F+E   +P+A+AS+ QV+ AR
Sbjct:   57 LRLALQELGPVWIKFGQMMSTRRDLFPPHIADPLALLQDQVAPFDGELAKQQMEKALGGPLENWFTEFDIKPLASASIAQVHTAR 141          
The following BLAST results are available for this feature:
BLAST of FC899928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 167
Match NameE-valueIdentityDescription
UBIB_KLEP71.991e-1546.59Probable ubiquinone biosynthesis protein ubiB OS=K... [more]
UBIB_BURPS1.991e-1547.73Probable ubiquinone biosynthesis protein ubiB OS=B... [more]
UBIB_BURP61.991e-1547.73Probable ubiquinone biosynthesis protein ubiB OS=B... [more]
UBIB_BURP11.991e-1547.73Probable ubiquinone biosynthesis protein ubiB OS=B... [more]
UBIB_BURP01.991e-1547.73Probable ubiquinone biosynthesis protein ubiB OS=B... [more]
UBIB_BURMS1.991e-1547.73Probable ubiquinone biosynthesis protein ubiB OS=B... [more]
UBIB_BURMA1.991e-1547.73Probable ubiquinone biosynthesis protein ubiB OS=B... [more]
UBIB_BURM91.991e-1547.73Probable ubiquinone biosynthesis protein ubiB OS=B... [more]
UBIB_BURM71.991e-1547.73Probable ubiquinone biosynthesis protein ubiB OS=B... [more]
UBIB_VIBPA2.601e-1547.06Probable ubiquinone biosynthesis protein ubiB OS=V... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA88AF01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA88AF01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC899928 ID=FC899928; Name=FC899928; organism=Citrus clementina; type=EST; length=835bp
AGAAATGTGGATAAAGTATAAAAAGAACCACGAAAAAATTGCCGCCCCGT
TGCCTTACACGTATCTGTCGATTTTTACACTCCCACCAAAACACCTCAGA
GCTTCGCTCTGTCTCGTCCCCTTCTTTCTCGCTGCATTCATATTTCATTT
TAATATTGTTAAATTCATCGCTCCCATTGCATTTCATCACCCGCCGCGCG
TGATTAATGTCAATGTCACTCCTCCTCCTCTTCGCGTCACCGCCAATCCC
CGCCCTTCCCGCCAATCAACAACTTAAAATCTATGGAAAGCCAATAAACC
ACCGGCACCTCAAGTCCTCGCGAGTGTCTGCCACTCGCGACGACGTCGAT
GCGTTCACCGAGAAGTCGAGCTACTTGTTCAAGCTCAGCTCGACCGACGC
CGACTCCATCGTAGAATACGATTTGAGAAAAATCGCTTCCGTTTATAGAA
GAAAGCCGTTGATTTTGCTGCGGCGAGTATTTCAAGTTGGCACGACTTTC
GGATGGTGGTTCGGGTCGCGGTTTGTTGATGAACTAATGGAGCGATCCGA
CCAGATGTTTCCGGTTAGAGCTGCCGAGTTGCGGAAGATATTGGTGGAAC
TCGGTCCAGCGTACGTCAAAATTGCTCAGGCTGTTTCTTCTCGACCTGAT
TTGATACCACCATCATATTTGGATGAGCTCTCTCTGTTGCAAGATCAGAT
AACCCCGTTTTCCTCTGAAGTTGCTTTCAATACAATAGAACAGGAACTTG
GATTACCGATAGATGAGCTTTTCTCTGAAATATCGCCAGAACCTGTAGCA
GCAGCGTCTCTTGGGCAGGTTTATCAAGCTAGACT
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