FC899928

Overview
NameFC899928
Unique NameFC899928
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length835
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_CITK8 (Probable ubiquinone biosynthesis protein ubiB OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=ubiB PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.686e-14
Identity = 39/86 (45.35%), Postives = 58/86 (67.44%), Query Frame = 3
Query:  579 LRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQEL-GLPIDELFSEISPEPVAAASLGQVYQAR 833
            LR  L ELGP ++K  Q +S+R DL PP   D+L+LLQD++ PF   +A   IE+ + GLP++E F +   +P+A+AS+ QV+ AR
Sbjct:   57 LRLALQELGPVWIKFGQMLSTRRDLFPPQIADQLALLQDKVAPFDGALAKAQIEEAMGGLPVEEWFDDFDIQPLASASIAQVHTAR 142          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_AERS4 (Probable ubiquinone biosynthesis protein ubiB OS=Aeromonas salmonicida (strain A449) GN=ubiB PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.686e-14
Identity = 36/89 (40.45%), Postives = 56/89 (62.92%), Query Frame = 3
Query:  567 RAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQAR 833
            R A +R     LGP ++K  Q +S+R DL+PP   +EL++LQD++ PF  + A   IE+ LG P++ LF +    P+A+AS+ QV+  R
Sbjct:   53 RGARIRLAFEALGPIFIKFGQMLSTRRDLLPPDIAEELAMLQDRVPPFCGQAARLKIEESLGCPVETLFDDFDETPLASASIAQVHTGR 141          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_ACIAC (Probable ubiquinone biosynthesis protein ubiB OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=ubiB PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.686e-14
Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 3
Query:  567 RAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQA 830
            R   LR+ L  LGP +VK  Q +S+R DL+PP   +EL+LLQD++ PF  +VA  TIE+    P+ E+F      PVA+AS+ QV+ A
Sbjct:   49 RGQRLREALERLGPIFVKFGQVLSTRRDLLPPDIANELALLQDRVPPFDPDVAVATIERAFRRPVGEVFVSFERVPVASASIAQVHFA 136          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_XANC5 (Probable ubiquinone biosynthesis protein ubiB OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=ubiB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.202e-14
Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = 3
Query:  567 RAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQA 830
            R A LR  L ELGP +VK  Q +S+R DLIP    +EL+LLQD++ PF  + A   +E  LGLP+   F+     P+A+AS+ QV+ A
Sbjct:   51 RGARLRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVKPFDGQAARLIVEAALGLPVSVAFASFDTVPLASASIAQVHAA 138          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_XANAC (Probable ubiquinone biosynthesis protein ubiB OS=Xanthomonas axonopodis pv. citri GN=ubiB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.202e-14
Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = 3
Query:  567 RAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQA 830
            R A LR  L ELGP +VK  Q +S+R DLIP    +EL+LLQD++ PF  + A   +E  LGLP+   F+     P+A+AS+ QV+ A
Sbjct:   51 RGARLRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVKPFDGQAARLIVEAALGLPVSVAFASFDTVPLASASIAQVHAA 138          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_VIBHB (Probable ubiquinone biosynthesis protein ubiB OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=ubiB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.202e-14
Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 3
Query:  579 LRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQAR 833
            LR  L ELGP ++K  Q +S+R DL PP   D L+LLQDQ+ PF  ++A   +E  LG P+   F+E   +P+A+AS+ QV+ AR
Sbjct:   57 LRLALQELGPVWIKFGQMMSTRRDLFPPHIADPLALLQDQVAPFDGQLAKEQMELALGGPLQNWFTEFDIKPLASASIAQVHTAR 141          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_SALTY (Probable ubiquinone biosynthesis protein ubiB OS=Salmonella typhimurium GN=ubiB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.202e-14
Identity = 42/111 (37.84%), Postives = 65/111 (58.56%), Query Frame = 3
Query:  504 WWFGSRFVDELMERSDQMFPVRAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQEL-GLPIDELFSEISPEPVAAASLGQVYQAR 833
            +W  +R  D+L+             LR  L ELGP ++K  Q +S+R DL PP   D+L+LLQD++ PF   +A   IE+ + GLP++  F +   +P+A+AS+ QV+ AR
Sbjct:   42 FWMPNRHKDKLL----------GERLRLALQELGPVWIKFGQMLSTRRDLFPPQIADQLALLQDKVAPFDGRLAKAQIEEAMGGLPVEAWFDDFDIQPLASASIAQVHTAR 142          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_SALTI (Probable ubiquinone biosynthesis protein ubiB OS=Salmonella typhi GN=ubiB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.202e-14
Identity = 42/111 (37.84%), Postives = 65/111 (58.56%), Query Frame = 3
Query:  504 WWFGSRFVDELMERSDQMFPVRAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQEL-GLPIDELFSEISPEPVAAASLGQVYQAR 833
            +W  +R  D+L+             LR  L ELGP ++K  Q +S+R DL PP   D+L+LLQD++ PF   +A   IE+ + GLP++  F +   +P+A+AS+ QV+ AR
Sbjct:   42 FWMPNRHKDKLL----------GERLRLALQELGPVWIKFGQMLSTRRDLFPPQIADQLALLQDKVAPFDGRLAKAQIEEAMGGLPVEAWFDDFDIQPLASASIAQVHTAR 142          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_SALSV (Probable ubiquinone biosynthesis protein ubiB OS=Salmonella schwarzengrund (strain CVM19633) GN=ubiB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.202e-14
Identity = 42/111 (37.84%), Postives = 65/111 (58.56%), Query Frame = 3
Query:  504 WWFGSRFVDELMERSDQMFPVRAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQEL-GLPIDELFSEISPEPVAAASLGQVYQAR 833
            +W  +R  D+L+             LR  L ELGP ++K  Q +S+R DL PP   D+L+LLQD++ PF   +A   IE+ + GLP++  F +   +P+A+AS+ QV+ AR
Sbjct:   42 FWMPNRHKDKLL----------GERLRLALQELGPVWIKFGQMLSTRRDLFPPQIADQLALLQDKVAPFDGRLAKAQIEEAMGGLPVEAWFDDFDIQPLASASIAQVHTAR 142          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_SALPK (Probable ubiquinone biosynthesis protein ubiB OS=Salmonella paratyphi A (strain AKU_12601) GN=ubiB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.202e-14
Identity = 42/111 (37.84%), Postives = 65/111 (58.56%), Query Frame = 3
Query:  504 WWFGSRFVDELMERSDQMFPVRAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQEL-GLPIDELFSEISPEPVAAASLGQVYQAR 833
            +W  +R  D+L+             LR  L ELGP ++K  Q +S+R DL PP   D+L+LLQD++ PF   +A   IE+ + GLP++  F +   +P+A+AS+ QV+ AR
Sbjct:   42 FWMPNRHKDKLL----------GERLRLALQELGPVWIKFGQMLSTRRDLFPPQIADQLALLQDKVAPFDGRLAKAQIEEAMGGLPVEAWFDDFDIQPLASASIAQVHTAR 142          
The following BLAST results are available for this feature:
BLAST of FC899928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 167
Match NameE-valueIdentityDescription
UBIB_CITK81.686e-1445.35Probable ubiquinone biosynthesis protein ubiB OS=C... [more]
UBIB_AERS41.686e-1440.45Probable ubiquinone biosynthesis protein ubiB OS=A... [more]
UBIB_ACIAC1.686e-1445.45Probable ubiquinone biosynthesis protein ubiB OS=A... [more]
UBIB_XANC52.202e-1445.45Probable ubiquinone biosynthesis protein ubiB OS=X... [more]
UBIB_XANAC2.202e-1445.45Probable ubiquinone biosynthesis protein ubiB OS=X... [more]
UBIB_VIBHB2.202e-1445.88Probable ubiquinone biosynthesis protein ubiB OS=V... [more]
UBIB_SALTY2.202e-1437.84Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SALTI2.202e-1437.84Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SALSV2.202e-1437.84Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SALPK2.202e-1437.84Probable ubiquinone biosynthesis protein ubiB OS=S... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA88AF01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA88AF01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC899928 ID=FC899928; Name=FC899928; organism=Citrus clementina; type=EST; length=835bp
AGAAATGTGGATAAAGTATAAAAAGAACCACGAAAAAATTGCCGCCCCGT
TGCCTTACACGTATCTGTCGATTTTTACACTCCCACCAAAACACCTCAGA
GCTTCGCTCTGTCTCGTCCCCTTCTTTCTCGCTGCATTCATATTTCATTT
TAATATTGTTAAATTCATCGCTCCCATTGCATTTCATCACCCGCCGCGCG
TGATTAATGTCAATGTCACTCCTCCTCCTCTTCGCGTCACCGCCAATCCC
CGCCCTTCCCGCCAATCAACAACTTAAAATCTATGGAAAGCCAATAAACC
ACCGGCACCTCAAGTCCTCGCGAGTGTCTGCCACTCGCGACGACGTCGAT
GCGTTCACCGAGAAGTCGAGCTACTTGTTCAAGCTCAGCTCGACCGACGC
CGACTCCATCGTAGAATACGATTTGAGAAAAATCGCTTCCGTTTATAGAA
GAAAGCCGTTGATTTTGCTGCGGCGAGTATTTCAAGTTGGCACGACTTTC
GGATGGTGGTTCGGGTCGCGGTTTGTTGATGAACTAATGGAGCGATCCGA
CCAGATGTTTCCGGTTAGAGCTGCCGAGTTGCGGAAGATATTGGTGGAAC
TCGGTCCAGCGTACGTCAAAATTGCTCAGGCTGTTTCTTCTCGACCTGAT
TTGATACCACCATCATATTTGGATGAGCTCTCTCTGTTGCAAGATCAGAT
AACCCCGTTTTCCTCTGAAGTTGCTTTCAATACAATAGAACAGGAACTTG
GATTACCGATAGATGAGCTTTTCTCTGAAATATCGCCAGAACCTGTAGCA
GCAGCGTCTCTTGGGCAGGTTTATCAAGCTAGACT
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