FC899928

Overview
NameFC899928
Unique NameFC899928
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length835
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_SHEPW (Probable ubiquinone biosynthesis protein ubiB OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=ubiB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.875e-14
Identity = 37/89 (41.57%), Postives = 57/89 (64.04%), Query Frame = 3
Query:  564 VRAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQA 830
            V    L+  + ELGP Y+K  Q +S+R DL+   + +EL++LQD++ PF S +A  +IEQEL  PI+  F +    P+A+AS+ QV+ A
Sbjct:   52 VGGERLKLAMQELGPVYIKFGQMLSTRRDLLSDEWAEELAMLQDRVPPFDSAIARESIEQELNAPIETYFDDFEDTPLASASISQVHTA 140          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_VIBVY (Probable ubiquinone biosynthesis protein ubiB OS=Vibrio vulnificus (strain YJ016) GN=ubiB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.755e-14
Identity = 39/85 (45.88%), Postives = 56/85 (65.88%), Query Frame = 3
Query:  579 LRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQAR 833
            LR  L ELGP ++K  Q +S+R DL PP   D L+LLQDQ++PF   +A   +EQ LG P++  FS+    P+A+AS+ QV+ A+
Sbjct:   57 LRLALQELGPVWIKFGQMLSTRRDLFPPHIADPLALLQDQVSPFDGALAKAQMEQALGGPLETWFSDFDLVPLASASIAQVHTAK 141          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_VIBVU (Probable ubiquinone biosynthesis protein ubiB OS=Vibrio vulnificus GN=ubiB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.755e-14
Identity = 39/85 (45.88%), Postives = 56/85 (65.88%), Query Frame = 3
Query:  579 LRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQAR 833
            LR  L ELGP ++K  Q +S+R DL PP   D L+LLQDQ++PF   +A   +EQ LG P++  FS+    P+A+AS+ QV+ A+
Sbjct:   57 LRLALQELGPVWIKFGQMLSTRRDLFPPHIADPLALLQDQVSPFDGALAKAQMEQALGGPLETWFSDFDLVPLASASIAQVHTAK 141          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_SHISS (Probable ubiquinone biosynthesis protein ubiB OS=Shigella sonnei (strain Ss046) GN=ubiB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.755e-14
Identity = 42/111 (37.84%), Postives = 65/111 (58.56%), Query Frame = 3
Query:  504 WWFGSRFVDELMERSDQMFPVRAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQEL-GLPIDELFSEISPEPVAAASLGQVYQAR 833
            +W  +R  D+L+             LR  L ELGP ++K  Q +S+R DL PP   D+L+LLQD++ PF  ++A   IE  + GLP++  F +   +P+A+AS+ QV+ AR
Sbjct:   42 FWMPNRHKDKLL----------GERLRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDKVAPFDGKLAKQQIEAAMGGLPVEAWFDDFEIKPLASASIAQVHTAR 142          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_SHIFL (Probable ubiquinone biosynthesis protein ubiB OS=Shigella flexneri GN=ubiB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.755e-14
Identity = 42/111 (37.84%), Postives = 65/111 (58.56%), Query Frame = 3
Query:  504 WWFGSRFVDELMERSDQMFPVRAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQEL-GLPIDELFSEISPEPVAAASLGQVYQAR 833
            +W  +R  D+L+             LR  L ELGP ++K  Q +S+R DL PP   D+L+LLQD++ PF  ++A   IE  + GLP++  F +   +P+A+AS+ QV+ AR
Sbjct:   42 FWMPNRHKDKLL----------GERLRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDKVAPFDGKLAKQQIEAAMGGLPVEAWFDDFEIKPLASASIAQVHTAR 142          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_SHIF8 (Probable ubiquinone biosynthesis protein ubiB OS=Shigella flexneri serotype 5b (strain 8401) GN=ubiB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.755e-14
Identity = 42/111 (37.84%), Postives = 65/111 (58.56%), Query Frame = 3
Query:  504 WWFGSRFVDELMERSDQMFPVRAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQEL-GLPIDELFSEISPEPVAAASLGQVYQAR 833
            +W  +R  D+L+             LR  L ELGP ++K  Q +S+R DL PP   D+L+LLQD++ PF  ++A   IE  + GLP++  F +   +P+A+AS+ QV+ AR
Sbjct:   42 FWMPNRHKDKLL----------GERLRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDKVAPFDGKLAKQQIEAAMGGLPVEAWFDDFEIKPLASASIAQVHTAR 142          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_SHIDS (Probable ubiquinone biosynthesis protein ubiB OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=ubiB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.755e-14
Identity = 42/111 (37.84%), Postives = 65/111 (58.56%), Query Frame = 3
Query:  504 WWFGSRFVDELMERSDQMFPVRAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQEL-GLPIDELFSEISPEPVAAASLGQVYQAR 833
            +W  +R  D+L+             LR  L ELGP ++K  Q +S+R DL PP   D+L+LLQD++ PF  ++A   IE  + GLP++  F +   +P+A+AS+ QV+ AR
Sbjct:   42 FWMPNRHKDKLL----------GERLRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDKVAPFDGKLAKQQIEAAMGGLPVEAWFDDFEIKPLASASIAQVHTAR 142          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_SHIBS (Probable ubiquinone biosynthesis protein ubiB OS=Shigella boydii serotype 4 (strain Sb227) GN=ubiB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.755e-14
Identity = 42/111 (37.84%), Postives = 65/111 (58.56%), Query Frame = 3
Query:  504 WWFGSRFVDELMERSDQMFPVRAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQEL-GLPIDELFSEISPEPVAAASLGQVYQAR 833
            +W  +R  D+L+             LR  L ELGP ++K  Q +S+R DL PP   D+L+LLQD++ PF  ++A   IE  + GLP++  F +   +P+A+AS+ QV+ AR
Sbjct:   42 FWMPNRHKDKLL----------GERLRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDKVAPFDGKLAKQQIEAAMGGLPVEAWFDDFEIKPLASASIAQVHTAR 142          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_SHIB3 (Probable ubiquinone biosynthesis protein ubiB OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=ubiB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.755e-14
Identity = 42/111 (37.84%), Postives = 65/111 (58.56%), Query Frame = 3
Query:  504 WWFGSRFVDELMERSDQMFPVRAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQEL-GLPIDELFSEISPEPVAAASLGQVYQAR 833
            +W  +R  D+L+             LR  L ELGP ++K  Q +S+R DL PP   D+L+LLQD++ PF  ++A   IE  + GLP++  F +   +P+A+AS+ QV+ AR
Sbjct:   42 FWMPNRHKDKLL----------GERLRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDKVAPFDGKLAKQQIEAAMGGLPVEAWFDDFEIKPLASASIAQVHTAR 142          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_SHEWM (Probable ubiquinone biosynthesis protein ubiB OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=ubiB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.755e-14
Identity = 40/109 (36.70%), Postives = 61/109 (55.96%), Query Frame = 3
Query:  504 WWFGSRFVDELMERSDQMFPVRAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQA 830
            W+F          R+     V    L+ ++ ELGP Y+K  Q +S+R DL+   + +EL++LQD++ PF S +A   IE ELG  ID  F +    P+A+AS+ QV+ A
Sbjct:   32 WYFRLLRCTFFWLRNQHKDKVGGERLKLVMQELGPVYIKFGQMLSTRRDLLDDEWAEELAMLQDRVPPFDSSIAREMIELELGTSIDTYFDDFDNTPLASASISQVHTA 140          
The following BLAST results are available for this feature:
BLAST of FC899928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 167
Match NameE-valueIdentityDescription
UBIB_SHEPW2.875e-1441.57Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_VIBVY3.755e-1445.88Probable ubiquinone biosynthesis protein ubiB OS=V... [more]
UBIB_VIBVU3.755e-1445.88Probable ubiquinone biosynthesis protein ubiB OS=V... [more]
UBIB_SHISS3.755e-1437.84Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SHIFL3.755e-1437.84Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SHIF83.755e-1437.84Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SHIDS3.755e-1437.84Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SHIBS3.755e-1437.84Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SHIB33.755e-1437.84Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SHEWM3.755e-1436.70Probable ubiquinone biosynthesis protein ubiB OS=S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA88AF01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA88AF01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC899928 ID=FC899928; Name=FC899928; organism=Citrus clementina; type=EST; length=835bp
AGAAATGTGGATAAAGTATAAAAAGAACCACGAAAAAATTGCCGCCCCGT
TGCCTTACACGTATCTGTCGATTTTTACACTCCCACCAAAACACCTCAGA
GCTTCGCTCTGTCTCGTCCCCTTCTTTCTCGCTGCATTCATATTTCATTT
TAATATTGTTAAATTCATCGCTCCCATTGCATTTCATCACCCGCCGCGCG
TGATTAATGTCAATGTCACTCCTCCTCCTCTTCGCGTCACCGCCAATCCC
CGCCCTTCCCGCCAATCAACAACTTAAAATCTATGGAAAGCCAATAAACC
ACCGGCACCTCAAGTCCTCGCGAGTGTCTGCCACTCGCGACGACGTCGAT
GCGTTCACCGAGAAGTCGAGCTACTTGTTCAAGCTCAGCTCGACCGACGC
CGACTCCATCGTAGAATACGATTTGAGAAAAATCGCTTCCGTTTATAGAA
GAAAGCCGTTGATTTTGCTGCGGCGAGTATTTCAAGTTGGCACGACTTTC
GGATGGTGGTTCGGGTCGCGGTTTGTTGATGAACTAATGGAGCGATCCGA
CCAGATGTTTCCGGTTAGAGCTGCCGAGTTGCGGAAGATATTGGTGGAAC
TCGGTCCAGCGTACGTCAAAATTGCTCAGGCTGTTTCTTCTCGACCTGAT
TTGATACCACCATCATATTTGGATGAGCTCTCTCTGTTGCAAGATCAGAT
AACCCCGTTTTCCTCTGAAGTTGCTTTCAATACAATAGAACAGGAACTTG
GATTACCGATAGATGAGCTTTTCTCTGAAATATCGCCAGAACCTGTAGCA
GCAGCGTCTCTTGGGCAGGTTTATCAAGCTAGACT
back to top