FC900542

Overview
NameFC900542
Unique NameFC900542
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC900542 vs. ExPASy Swiss-Prot
Match: EF1G_MOUSE (Elongation factor 1-gamma OS=Mus musculus GN=Eef1g PE=1 SV=3)

HSP 1 Score: 231.491 bits (589), Expect = 3.213e-60
Identity = 105/163 (64.42%), Postives = 131/163 (80.37%), Query Frame = 3
Query:  174 ESKDPFDSMPKGTFNMDDFKRCYSNEDE-EKSIPYFWEKFDPENYSIWYGEYKYPEELSKVFMSCNLITGMFQRLDKMRKQAFASVCLFGGDNDSSISGVWVWRGKDLAFPLSPDWTIDYESYDWTKLDPASPDTKKMVKDYFSWSGQ-DKKGRKFNQGKIFK 656
            ++KDPF  +PK TF +D+FKR YSNED    ++PYFWE FD + +S+WY EY++PEEL++ FMSCNLITGMFQRLDK+RK AFASV LFG +N SSISGVWV+RG++LAFPLSPDW +DYESY W KLDP S +T+ +V++YFSW G     G+  NQGKIFK
Sbjct:  275 KAKDPFAHLPKSTFVLDEFKRKYSNEDTLSVALPYFWEHFDKDGWSLWYAEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQELAFPLSPDWQVDYESYTWRKLDPGSEETQTLVREYFSWEGTFQHVGKAVNQGKIFK 437          
BLAST of FC900542 vs. ExPASy Swiss-Prot
Match: EF1GA_XENLA (Elongation factor 1-gamma-A OS=Xenopus laevis GN=eef1g-A PE=1 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.480e-60
Identity = 108/163 (66.26%), Postives = 131/163 (80.37%), Query Frame = 3
Query:  174 ESKDPFDSMPKGTFNMDDFKRCYSNEDE-EKSIPYFWEKFDPENYSIWYGEYKYPEELSKVFMSCNLITGMFQRLDKMRKQAFASVCLFGGDNDSSISGVWVWRGKDLAFPLSPDWTIDYESYDWTKLDPASPDTKKMVKDYFSWSGQDKK-GRKFNQGKIFK 656
            +SKDP+  +PK +F MD+FKR YSNED    ++PYFWE FD E +SIWY EYK+PEEL++ FMSCNLITGMFQRLDK+RK  FASV LFG +N+SSISGVWV+RG+DLAF LS DW IDYESY+W KLD  S + K +VK+YF+W G+ K  G+ FNQGKIFK
Sbjct:  274 KSKDPYAHLPKSSFIMDEFKRKYSNEDTLTVALPYFWEHFDKEGWSIWYAEYKFPEELTQAFMSCNLITGMFQRLDKLRKTGFASVILFGTNNNSSISGVWVFRGQDLAFTLSEDWQIDYESYNWRKLDSGSEECKTLVKEYFAWEGEFKNVGKPFNQGKIFK 436          
BLAST of FC900542 vs. ExPASy Swiss-Prot
Match: EF1G_BOVIN (Elongation factor 1-gamma OS=Bos taurus GN=EEF1G PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.720e-59
Identity = 103/163 (63.19%), Postives = 130/163 (79.75%), Query Frame = 3
Query:  174 ESKDPFDSMPKGTFNMDDFKRCYSNEDE-EKSIPYFWEKFDPENYSIWYGEYKYPEELSKVFMSCNLITGMFQRLDKMRKQAFASVCLFGGDNDSSISGVWVWRGKDLAFPLSPDWTIDYESYDWTKLDPASPDTKKMVKDYFSWSGQ-DKKGRKFNQGKIFK 656
            ++KDPF  +PK TF +D+FKR YSNED    ++PYFW+ FD + +S+WY EY++PEEL++ FMSCNLITGMFQRLDK+RK AFASV LFG +N SSISGVW +RG++LAFPLSPDW +DYESY W KLDP S +T+ +V++YF W G     G+ FNQGKIFK
Sbjct:  278 KAKDPFAHLPKSTFVLDEFKRKYSNEDTLSVALPYFWDHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWDFRGQELAFPLSPDWQVDYESYTWRKLDPGSEETQTLVREYFCWEGAFQHVGKAFNQGKIFK 440          
BLAST of FC900542 vs. ExPASy Swiss-Prot
Match: EF1G_CARAU (Elongation factor 1-gamma OS=Carassius auratus GN=eef1g PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.763e-58
Identity = 105/163 (64.42%), Postives = 129/163 (79.14%), Query Frame = 3
Query:  174 ESKDPFDSMPKGTFNMDDFKRCYSNEDE-EKSIPYFWEKFDPENYSIWYGEYKYPEELSKVFMSCNLITGMFQRLDKMRKQAFASVCLFGGDNDSSISGVWVWRGKDLAFPLSPDWTIDYESYDWTKLDPASPDTKKMVKDYFSWSGQDKK-GRKFNQGKIFK 656
            ++KDP+  +PK +F MD+FKR YSNED    ++PYFW+ FD E +SIWY EY++PEEL+  FMSCNLITGMFQRLDK+RK AFASV LFG +NDS ISG+WV+RG++LAF LS DW IDYESY W KLD  S + K MVK+YF+W G+ K  G+ FNQGKIFK
Sbjct:  280 KAKDPYAHLPKSSFVMDEFKRKYSNEDTLTVALPYFWDHFDREGFSIWYAEYRFPEELTMSFMSCNLITGMFQRLDKLRKNAFASVILFGANNDSCISGIWVFRGQELAFTLSEDWQIDYESYTWRKLDVDSEECKTMVKEYFAWEGEFKHVGKSFNQGKIFK 442          
BLAST of FC900542 vs. ExPASy Swiss-Prot
Match: EF1GB_XENLA (Elongation factor 1-gamma-B OS=Xenopus laevis GN=eef1g-B PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.302e-58
Identity = 106/163 (65.03%), Postives = 130/163 (79.75%), Query Frame = 3
Query:  174 ESKDPFDSMPKGTFNMDDFKRCYSNEDE-EKSIPYFWEKFDPENYSIWYGEYKYPEELSKVFMSCNLITGMFQRLDKMRKQAFASVCLFGGDNDSSISGVWVWRGKDLAFPLSPDWTIDYESYDWTKLDPASPDTKKMVKDYFSWSGQDKK-GRKFNQGKIFK 656
            +SKDP+  +PK +F MD+FKR YSNED    ++PYFWE F+ E +SIWY EYK+PEEL++ FMSCNLITGMFQRLDK+RK AFASV LFG +N+S+ISGVWV+RG DLAF LS DW IDYESY W KL+  S + + MVK+YF+W G+ K  G+ FNQGKIFK
Sbjct:  275 KSKDPYAHLPKSSFIMDEFKRKYSNEDTLTVALPYFWEHFEKEGWSIWYAEYKFPEELTQTFMSCNLITGMFQRLDKLRKTAFASVILFGTNNNSTISGVWVFRGHDLAFTLSEDWQIDYESYTWRKLESDSEECRTMVKEYFAWEGEFKHVGKAFNQGKIFK 437          
BLAST of FC900542 vs. ExPASy Swiss-Prot
Match: EF1G_SCHPO (Elongation factor 1-gamma OS=Schizosaccharomyces pombe GN=tef3 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.399e-31
Identity = 72/170 (42.35%), Postives = 109/170 (64.12%), Query Frame = 3
Query:  162 EKP-KESKDPFDSMPKGTFNMDDFKRCYSNEDEEK-SIPYFWEKFDPENYSIWYGEYKYPEELSK-VFMSCNLITGMFQRLDKMRKQAFASVCLFGGDNDSSISGVWVWRGKDL--AFPLSPDWTIDYESYDWTKLDPASPDTKKMVKDYFSWSGQDKKGRKFNQGKIFK 656
            E+P K  K P  S P G+F+++++KR YSN+D    ++P+F+E FDPENYS+W  +Y YPE+L + VFM+ NLI G FQRL+  RK  F    + G + D++I+G +V +G D   AF ++PDW     SY +TKLD   P+ K  ++D ++W  +  +GR+   GK+ K
Sbjct:  245 ERPAKPPKHPLASAPNGSFDIEEYKRVYSNQDTRSGALPWFFEHFDPENYSVWKVDYSYPEDLKQPVFMTNNLIGGFFQRLEASRKYIFGCCVVIGENGDNTITGAFVIKGHDYVPAFDVAPDW----GSYTFTKLDINKPEDKAFIEDAWAWD-KPIEGREVADGKVCK 409          
BLAST of FC900542 vs. ExPASy Swiss-Prot
Match: EF1G2_YEAST (Elongation factor 1-gamma 2 OS=Saccharomyces cerevisiae GN=TEF4 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.464e-30
Identity = 69/171 (40.35%), Postives = 105/171 (61.40%), Query Frame = 3
Query:  171 KESKDPFDSMPKGTFNMDDFKRCYSNEDEEK-SIPYFWEKFDPENYSIWYGEYKYPEELSKVFMSCNLITGMFQRLDKMRKQAFASVCLFGGDNDSSISGVWVWRGKDL--AFPLSPDWTIDYESYDWTKLDPASPDTKKMVKDYFSW------SGQDKKGRKFNQGKIFK 656
            K+ K P +++ K TF +DD+KR YSN+D    ++P+FWE ++PE YSIW   YKY +EL+  FMS NL+ G F RL    K  F  + ++G +N++ I G  + RG+D   AF ++PDW    ESY++TKLDP   + K+ V + ++W      +G+DK   +   GK+ K
Sbjct:  249 KKPKHPLEALGKSTFVLDDWKRKYSNDDTRPVALPWFWEHYNPEEYSIWKVGYKYNDELTLTFMSNNLVGGFFNRLSASTKYMFGCLVVYGENNNNGIVGAVMVRGQDFAPAFDVAPDW----ESYEYTKLDPTKEEDKEFVNNMWAWDKPVVVNGEDK---EIVDGKVLK 412          
BLAST of FC900542 vs. ExPASy Swiss-Prot
Match: EF1G1_YEAST (Elongation factor 1-gamma 1 OS=Saccharomyces cerevisiae GN=CAM1 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.008e-29
Identity = 66/168 (39.29%), Postives = 102/168 (60.71%), Query Frame = 3
Query:  171 KESKDPFDSMPKGTFNMDDFKRCYSNEDEEK-SIPYFWEKFDPENYSIWYGEYKYPEELSKVFMSCNLITGMFQRLDKMRKQAFASVCLFGGDNDSSISGVWVWRGKDL--AFPLSPDWTIDYESYDWTKLDPASPDTKKMVKDYFSWS---GQDKKGRKFNQGKIFK 656
            K+ K P + + K TF +DD+KR YSNED    ++P+FWE ++PE YS+W   YKY +EL+  FMS NL+ G F RL    K  F  + ++G +N++ I G  + RG+D   AF ++PDW    ESYD+ KLDP + D K+ + + ++W      + + ++   GK+ K
Sbjct:  252 KKPKHPLELLGKSTFVLDDWKRKYSNEDTRPVALPWFWEHYNPEEYSLWKVTYKYNDELTLTFMSNNLVGGFFNRLSASTKYMFGCLVVYGENNNNGIVGAVMVRGQDYVPAFDVAPDW----ESYDYAKLDPTNDDDKEFINNMWAWDKPVSVNGEPKEIVDGKVLK 415          
BLAST of FC900542 vs. ExPASy Swiss-Prot
Match: EF1G_PRUAV (Elongation factor 1-gamma OS=Prunus avium PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.841e-24
Identity = 58/171 (33.92%), Postives = 94/171 (54.97%), Query Frame = 3
Query:  156 IDEKPK-ESKDPFDSMPKGTFNMDDFKRCYSNED---EEKSIPYFWEKFDPENYSIWYGEYKYPEELSKVFMSCNLITGMFQRLDKMRKQAFASVCLFGGDNDSSISGVWVWRGKDLAFPLSPDWTIDYESYDWTKLDPASPDTKKMVKDYFSWSGQDKKGRKFNQGKIFK 656
            ++E PK + K+P D +P     +DD+KR YSN      E +I  FW+ +DPE YS+W+ EYKY +E +  F++ N + G  QR+D  RK AF  + + G +    + G+W++RG+++  P   +   D E Y+WTK+D +  + K+ V        +  +G      K FK
Sbjct:  254 VEEAPKPKPKNPLDLLPPSNMVLDDWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCEYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQEIP-PFVMEECYDMELYNWTKVDLSDENQKERVNQVIE-DQEPFEGEALLDAKCFK 422          
BLAST of FC900542 vs. ExPASy Swiss-Prot
Match: EF1G3_ORYSJ (Elongation factor 1-gamma 3 OS=Oryza sativa subsp. japonica GN=Os06g0571400 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.102e-23
Identity = 56/161 (34.78%), Postives = 91/161 (56.52%), Query Frame = 3
Query:  159 DEKPK-ESKDPFDSMPKGTFNMDDFKRCYSNED---EEKSIPYFWEKFDPENYSIWYGEYKYPEELSKVFMSCNLITGMFQRLDKMRKQAFASVCLFGGDNDSSISGVWVWRGKDLAFPLSPDWTIDYESYDWTKLDPASPDTKK----MVKDYFSWSGQD 617
            +E PK + K+P D +P     +D++KR YSN      E +I  FW+ +DPE YS+W+ +YKY +E +  F++ N + G  QR+D  RK AF  + + G      + G+W++RG+D+      D   D E Y+WTK+D +    K+    M++D   + G+D
Sbjct:  249 EEAPKPKPKNPLDLLPPSKMILDEWKRLYSNTKTNFREIAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSTPPFKVKGLWLFRGQDIP-KFVMDEVYDMELYEWTKVDLSDEAQKERVNAMIEDQEPFEGED 408          
The following BLAST results are available for this feature:
BLAST of FC900542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
EF1G_MOUSE3.213e-6064.42Elongation factor 1-gamma OS=Mus musculus GN=Eef1g... [more]
EF1GA_XENLA5.480e-6066.26Elongation factor 1-gamma-A OS=Xenopus laevis GN=e... [more]
EF1G_BOVIN2.720e-5963.19Elongation factor 1-gamma OS=Bos taurus GN=EEF1G P... [more]
EF1G_CARAU1.763e-5864.42Elongation factor 1-gamma OS=Carassius auratus GN=... [more]
EF1GB_XENLA2.302e-5865.03Elongation factor 1-gamma-B OS=Xenopus laevis GN=e... [more]
EF1G_SCHPO2.399e-3142.35Elongation factor 1-gamma OS=Schizosaccharomyces p... [more]
EF1G2_YEAST3.464e-3040.35Elongation factor 1-gamma 2 OS=Saccharomyces cerev... [more]
EF1G1_YEAST1.008e-2939.29Elongation factor 1-gamma 1 OS=Saccharomyces cerev... [more]
EF1G_PRUAV2.841e-2433.92Elongation factor 1-gamma OS=Prunus avium PE=2 SV=... [more]
EF1G3_ORYSJ4.102e-2334.78Elongation factor 1-gamma 3 OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA28DE03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA28DE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC900542 ID=FC900542; Name=FC900542; organism=Citrus clementina; type=EST; length=683bp
TGCTCCCCGAGCCCGTGCTCACGGACAAGCCGGTCGTGTACGACCCCAAC
AAGTTCAACCAGTCCCAGCCCAAGGCCAAGAAGGACGCCCCTAAGAAGGA
CGCTCCCAAGAAGGAAGCGGCTCCCAAGGAGGCCAAGCCCGCCCCCGAGG
ACGACATTGATGAGAAGCCAAAGGAGTCAAAGGACCCCTTCGATTCAATG
CCTAAAGGAACCTTCAACATGGATGACTTCAAGCGCTGCTACTCAAATGA
AGACGAGGAGAAGTCCATCCCTTACTTCTGGGAGAAGTTTGACCCGGAGA
ACTACTCCATCTGGTACGGCGAGTACAAGTACCCCGAGGAGCTGTCCAAG
GTCTTCATGAGCTGTAACCTCATCACAGGCATGTTCCAGCGCCTGGACAA
GATGCGCAAGCAGGCGTTCGCGTCGGTGTGCCTGTTCGGCGGAGACAACG
ACTCCAGCATCTCGGGCGTGTGGGTGTGGCGCGGCAAGGACCTCGCCTTC
CCGCTGTCGCCCGACTGGACCATCGACTACGAGTCCTACGACTGGACCAA
GCTGGACCCAGCCTCCCCCGACACCAAGAAGATGGTCAAGGACTACTTCT
CGTGGAGCGGACAGGACAAGAAGGGCCGCAAGTTCAACCAGGGCAAGATC
TTCAAGTGAACGCCTTAATAAATACCCTTTATT
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