FC900544 | Citrus Genome Database

Overview


Name	FC900544
Unique Name	FC900544
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	799

Libraries


Library Name	Type
IVIA1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC900544 vs. ExPASy Swiss-Prot
Match: PRP4_PONAB (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Pongo abelii GN=PRPF4 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.722e-21
Identity = 63/223 (28.25%), Postives = 100/223 (44.84%), Query Frame = 3

Query:  129 SLESFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGVSDLAFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNR-DGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLW 794
            SL+S  P      + GH   ++ V +   GR L ++  D+                         GH  GV D+AF  D     +   D   R+WD+ T  C+  L GH   ++ +NF+P    I +G+ D T ++WD++  +C+  +PAH + VT V F    G  ++T +YD   +IW       +KTL   E   V  +  S +G+ I   + D T +LW
Sbjct:  308 SLDSDEPVA---DIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQE--------GHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTHPGWSPLKTLAGHEG-KVMGLDISSDGQLIATCSYDRTFKLW 518

HSP 2 Score: 82.0333 bits (201), Expect = 4.108e-15
Identity = 46/171 (26.90%), Postives = 81/171 (47.37%), Query Frame = 3

Query:  309 LQKFTGHEQGVSDLAFSSDSRF--------LVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWN 797
            L    GH   V  + F   S          L S + D +++LW + +   +  + GHT  V  V ++P    + +  +D + R+WD++  + +     HS  V  + F++DG++  T   D   R+WD  TG C+   ++     +  + FSPNG  I  G+ DNT ++W+
Sbjct:  265 LHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCI-MFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWD 434

HSP 3 Score: 80.8777 bits (198), Expect = 9.151e-15
Identity = 46/167 (27.54%), Postives = 71/167 (42.51%), Query Frame = 3

Query:  174 GHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGVSDLAFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNP-QSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDA 671
            GH   +  + F  DG L  +   D                     +    GH + +  + FS +   + + S D T ++WD+    C+ T+  H N V  V F P   N +++GA+D T +IW       LK L  H   V  +D + DG +I T SYD   ++W A
Sbjct:  362 GHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRC--------IMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMA 520

[Close]

BLAST of FC900544 vs. ExPASy Swiss-Prot
Match: PRP4_HUMAN (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Homo sapiens GN=PRPF4 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.722e-21
Identity = 63/223 (28.25%), Postives = 100/223 (44.84%), Query Frame = 3

Query:  129 SLESFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGVSDLAFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNR-DGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLW 794
            SL+S  P      + GH   ++ V +   GR L ++  D+                         GH  GV D+AF  D     +   D   R+WD+ T  C+  L GH   ++ +NF+P    I +G+ D T ++WD++  +C+  +PAH + VT V F    G  ++T +YD   +IW       +KTL   E   V  +  S +G+ I   + D T +LW
Sbjct:  309 SLDSDEPVA---DIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQE--------GHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTHPGWSPLKTLAGHEG-KVMGLDISSDGQLIATCSYDRTFKLW 519

HSP 2 Score: 82.0333 bits (201), Expect = 4.108e-15
Identity = 46/171 (26.90%), Postives = 81/171 (47.37%), Query Frame = 3

Query:  309 LQKFTGHEQGVSDLAFSSDSRF--------LVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWN 797
            L    GH   V  + F   S          L S + D +++LW + +   +  + GHT  V  V ++P    + +  +D + R+WD++  + +     HS  V  + F++DG++  T   D   R+WD  TG C+   ++     +  + FSPNG  I  G+ DNT ++W+
Sbjct:  266 LHTLRGHNTNVGAIVFHPKSTVSLDPKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCI-MFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWD 435

HSP 3 Score: 80.8777 bits (198), Expect = 9.151e-15
Identity = 46/167 (27.54%), Postives = 71/167 (42.51%), Query Frame = 3

Query:  174 GHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGVSDLAFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNP-QSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDA 671
            GH   +  + F  DG L  +   D                     +    GH + +  + FS +   + + S D T ++WD+    C+ T+  H N V  V F P   N +++GA+D T +IW       LK L  H   V  +D + DG +I T SYD   ++W A
Sbjct:  363 GHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRC--------IMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMA 521

[Close]

BLAST of FC900544 vs. ExPASy Swiss-Prot
Match: PRP4_BOVIN (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Bos taurus GN=PRPF4 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.722e-21
Identity = 63/223 (28.25%), Postives = 100/223 (44.84%), Query Frame = 3

Query:  129 SLESFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGVSDLAFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNR-DGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLW 794
            SL+S  P      + GH   ++ V +   GR L ++  D+                         GH  GV D+AF  D     +   D   R+WD+ T  C+  L GH   ++ +NF+P    I +G+ D T ++WD++  +C+  +PAH + VT V F    G  ++T +YD   +IW       +KTL   E   V  +  S +G+ I   + D T +LW
Sbjct:  308 SLDSDEPVA---DIEGHTVRVARVTWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQE--------GHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTHPGWSPLKTLAGHEG-KVMGLDISSDGQLIATCSYDRTFKLW 518

HSP 2 Score: 82.8037 bits (203), Expect = 2.408e-15
Identity = 46/171 (26.90%), Postives = 81/171 (47.37%), Query Frame = 3

Query:  309 LQKFTGHEQGVSDLAFSSDSRF--------LVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWN 797
            L    GH   V  + F   S          L S + D +++LW + +   +  + GHT  V  V ++P    + +  +D + R+WD++  + +     HS  V  + F++DG++  T   D   R+WD  TG C+   ++     +  + FSPNG  I  G+ DNT ++W+
Sbjct:  265 LHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVTWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCI-MFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWD 434

HSP 3 Score: 80.8777 bits (198), Expect = 9.151e-15
Identity = 46/167 (27.54%), Postives = 71/167 (42.51%), Query Frame = 3

Query:  174 GHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGVSDLAFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNP-QSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDA 671
            GH   +  + F  DG L  +   D                     +    GH + +  + FS +   + + S D T ++WD+    C+ T+  H N V  V F P   N +++GA+D T +IW       LK L  H   V  +D + DG +I T SYD   ++W A
Sbjct:  362 GHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRC--------IMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMA 520

[Close]

BLAST of FC900544 vs. ExPASy Swiss-Prot
Match: SMU1_DICDI (WD40 repeat-containing protein smu1 OS=Dictyostelium discoideum GN=smu1 PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.249e-21
Identity = 53/169 (31.36%), Postives = 84/169 (49.70%), Query Frame = 3

Query:  195 SVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGVSDLAFSSDSRFLVSASDDKTIRLWDVPTATCLKTLI-GHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTL 698
            ++KFS D + L + S D                        F  H+  +  +AFS D  FL + S D  I++W + +  CL+     HTN V C+ F+  S  I+SG+FD +++I  +K+GK LK+   H   V    FN D   +++ S DG  +IWDA +  C++T+
Sbjct:  230 TIKFSPDSKYLLTGSMDGFIEVWDYNTGKLSKSLAYQSNDDFMMHDDAILCIAFSKDGEFLATGSLDNKIKVWQIKSGKCLRKFEPAHTNGVTCLQFSRNSTQILSGSFDSSLKIHGLKSGKALKIFRGHQSFVNDCCFNHDEDRVISCSSDGKIKIWDAKSSDCLQTI 398

HSP 2 Score: 70.0922 bits (170), Expect = 1.615e-11
Identity = 32/114 (28.07%), Postives = 58/114 (50.88%), Query Frame = 3

Query:  474 VNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLP--------AHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRL 791
            + F+P S  +++G+ D  + +WD  TGK  K L          H D +  + F++DG  + T S D   ++W   +G C++         V+ ++FS N   IL G+ D++L++
Sbjct:  231 IKFSPDSKYLLTGSMDGFIEVWDYNTGKLSKSLAYQSNDDFMMHDDAILCIAFSKDGEFLATGSLDNKIKVWQIKSGKCLRKFEPAHTNGVTCLQFSRNSTQILSGSFDSSLKI 344

[Close]

BLAST of FC900544 vs. ExPASy Swiss-Prot
Match: PRP4_MOUSE (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Mus musculus GN=Prpf4 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.249e-21
Identity = 63/223 (28.25%), Postives = 100/223 (44.84%), Query Frame = 3

Query:  129 SLESFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGVSDLAFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNR-DGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLW 794
            SL+S  P      + GH   ++ V +   GR L ++  D+                         GH  GV D+AF  D     +   D   R+WD+ T  C+  L GH   ++ +NF+P    I +G+ D T ++WD++  +C+  +PAH + VT V F    G  ++T +YD   +IW       +KTL   E   V  +  S +G+ I   + D T +LW
Sbjct:  308 SLDSDEPVA---DIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQE--------GHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGDFLLTGAYDNTAKIWTHPGWSPLKTLAGHEG-KVMGLDISSDGQLIATCSYDRTFKLW 518

HSP 2 Score: 82.0333 bits (201), Expect = 4.108e-15
Identity = 46/171 (26.90%), Postives = 81/171 (47.37%), Query Frame = 3

Query:  309 LQKFTGHEQGVSDLAFSSDSRF--------LVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWN 797
            L    GH   V  + F   S          L S + D +++LW + +   +  + GHT  V  V ++P    + +  +D + R+WD++  + +     HS  V  + F++DG++  T   D   R+WD  TG C+   ++     +  + FSPNG  I  G+ DNT ++W+
Sbjct:  265 LHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCI-MFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWD 434

HSP 3 Score: 78.9518 bits (193), Expect = 3.477e-14
Identity = 45/167 (26.95%), Postives = 71/167 (42.51%), Query Frame = 3

Query:  174 GHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGVSDLAFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNP-QSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDA 671
            GH   +  + F  DG L  +   D                     +    GH + +  + FS +   + + S D T ++WD+    C+ T+  H N V  V F P   + +++GA+D T +IW       LK L  H   V  +D + DG +I T SYD   ++W A
Sbjct:  362 GHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRC--------IMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGDFLLTGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMA 520

[Close]

BLAST of FC900544 vs. ExPASy Swiss-Prot
Match: KTNB1_DANRE (Katanin p80 WD40-containing subunit B1 OS=Danio rerio GN=katnb1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.937e-21
Identity = 49/163 (30.06%), Postives = 85/163 (52.15%), Query Frame = 3

Query:  309 LQKFTGHEQGVSDLAFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWN 797
            +   TGH   V  + F+S    +V+ S   ++RLWD+  A  L+TL+GH   +  ++F+P    + SG+ D  +++WDV+   C+     H+  V  + F+ DG  + ++S D   ++WD   G  M T        V+ V+F PN   +  G+ D T++LW+
Sbjct:   56 IMSLTGHTSAVGCIQFNSSEERVVAGSLSGSLRLWDLEAAKILRTLMGHKASISSLDFHPMGEYLASGSVDSNIKLWDVRRKGCVFRYKGHTQAVRCLAFSPDGKWLASASDDSTVKLWDLIAGK-MITEFTSHTSAVNVVQFHPNEYLLASGSADRTVKLWD 217

HSP 2 Score: 101.679 bits (252), Expect = 5.009e-21
Identity = 48/164 (29.27%), Postives = 85/164 (51.83%), Query Frame = 3

Query:  309 LQKFTGHEQGVSDLAFSSDS-RFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWN 797
            LQ+   H   VS L     S R L +  +D  + +W V    C+ +L GHT+ V C+ FN     +V+G+   ++R+WD++  K L+ L  H   ++++DF+  G  + + S D   ++WD     C+          V  + FSP+GK++   + D+T++LW+
Sbjct:   13 LQEIVAHSSNVSSLVLGKSSGRLLATGGEDCRVNIWAVSKPNCIMSLTGHTSAVGCIQFNSSEERVVAGSLSGSLRLWDLEAAKILRTLMGHKASISSLDFHPMGEYLASGSVDSNIKLWDVRRKGCV-FRYKGHTQAVRCLAFSPDGKWLASASDDSTVKLWD 175

HSP 3 Score: 93.2041 bits (230), Expect = 1.782e-18
Identity = 56/177 (31.64%), Postives = 86/177 (48.59%), Query Frame = 3

Query:  156 LTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGVSDLAFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHC 686
            + +TL GH  +ISS+ F   G  LAS S D                       ++ GH Q V  LAFS D ++L SASDD T++LWD+     +     HT+ V  V F+P   ++ SG+ D TV++WD++    +      +  V +V FN DG+ + + S + L R++      C
Sbjct:   97 ILRTLMGHKASISSLDFHPMGEYLASGSVDSNIKLWDVRRKGCVF--------RYKGHTQAVRCLAFSPDGKWLASASDDSTVKLWDLIAGKMITEFTSHTSAVNVVQFHPNEYLLASGSADRTVKLWDLEKFNMIGSSEGETGVVRSVLFNPDGSCLYSGSENTL-RVYGWEPDRC 264

[Close]

BLAST of FC900544 vs. ExPASy Swiss-Prot
Match: KTNB1_CHICK (Katanin p80 WD40-containing subunit B1 OS=Gallus gallus GN=KATNB1 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.937e-21
Identity = 46/163 (28.22%), Postives = 87/163 (53.37%), Query Frame = 3

Query:  309 LQKFTGHEQGVSDLAFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWN 797
            +   TGH   +  L  S+    +V+ S   +IR+WD+  A  L+TL+GH   +  ++F+P  + + SG+ D  +++WDV+   C+    +H+  V  + F+ DG  + +++ D   ++WD + G  M       + PV+ V+F P+   +  G+ D T+R W+
Sbjct:   56 VMSLTGHTTPIESLQISAKEELIVAGSQSGSIRVWDLEAAKILRTLLGHKANICSLDFHPYGSFVASGSLDTDIKLWDVRRKGCIFKYKSHTQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKVMFE-FTGHSGPVNVVEFHPSEYLLASGSSDRTIRFWD 217

HSP 2 Score: 100.138 bits (248), Expect = 1.458e-20
Identity = 61/210 (29.05%), Postives = 95/210 (45.24%), Query Frame = 3

Query:  165 TLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGVSDLAFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLW 794
            +L GH   I S++ S    L+ + S                       L+   GH+  +  L F     F+ S S D  I+LWDV    C+     HT  V C+ F+P    + S A D TV++WD+  GK +     HS PV  V+F+    ++ + S D   R WD    H + + I++E  PV  + F+P+G   L G   ++LR++
Sbjct:   58 SLTGHTTPIESLQISAKEELIVAGSQS--------GSIRVWDLEAAKILRTLLGHKANICSLDFHPYGSFVASGSLDTDIKLWDVRRKGCIFKYKSHTQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKVMFEFTGHSGPVNVVEFHPSEYLLASGSSDRTIRFWDLEKFHVV-SCIEEEATPVRCILFNPDG-CCLYGGFQDSLRVY 257

HSP 3 Score: 94.3597 bits (233), Expect = 7.998e-19
Identity = 46/164 (28.05%), Postives = 84/164 (51.22%), Query Frame = 3

Query:  309 LQKFTGHEQGVSDLAFS-SDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWN 797
            LQ+   H   VS L    S  R L +  DD  + +W V    C+ +L GHT  +  +  + +  +IV+G+   ++R+WD++  K L+ L  H   + ++DF+  G+ + + S D   ++WD     C+          V  ++FSP+GK++     D+T++LW+
Sbjct:   13 LQEIVAHSSNVSSLVLGKSTGRLLATGGDDCRVNVWSVNKPNCVMSLTGHTTPIESLQISAKEELIVAGSQSGSIRVWDLEAAKILRTLLGHKANICSLDFHPYGSFVASGSLDTDIKLWDVRRKGCI-FKYKSHTQAVRCLRFSPDGKWLASAADDHTVKLWD 175

[Close]

BLAST of FC900544 vs. ExPASy Swiss-Prot
Match: GBLP_LEIMA (Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania major PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.937e-21
Identity = 62/205 (30.24%), Postives = 104/205 (50.73%), Query Frame = 3

Query:  168 LNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGVSDLAFSSDSRFLVSASDDKTIRLWDVPTATCLKTLI--GHTNYVFCVNFNP--QSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT 770
            L GH   +S V  +H      ++S D+                     +KF  H + V  +AFS D R +VSA  D  IR+W+V    C+   +  GH ++V  + F+P  +  ++VSG++D T+++W+V  GKC + L  HS+ V+ V  + DG++  +   DG   +WD STG  +  +  +   P++ + FSPN  ++ V T
Sbjct:   61 LEGHTGFVSCVSLAHATDYALTASWDRSIRMWDLRNGQCQ--------RKFLKHTKDVLAVAFSPDDRLIVSAGRDNVIRVWNV-AGECMHEFLRDGHEDWVSSICFSPSLEHPIVVSGSWDNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQLFKI--NVESPINQIGFSPNRFWMCVAT 254

HSP 2 Score: 90.1225 bits (222), Expect = 1.508e-17
Identity = 50/165 (30.30%), Postives = 88/165 (53.33%), Query Frame = 3

Query:  315 KFTGHEQGVSDLAFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLK--VLPAHSDPVTAVDF--NRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWN 797
            +  GH   VS ++ +  + + ++AS D++IR+WD+    C +  + HT  V  V F+P   +IVS   D  +R+W+V  G+C+   +   H D V+++ F  + +  ++V+ S+D   ++W+ + G C +TL    N  VS V  SP+G     G  D    LW+
Sbjct:   60 RLEGHTGFVSCVSLAHATDYALTASWDRSIRMWDLRNGQCQRKFLKHTKDVLAVAFSPDDRLIVSAGRDNVIRVWNV-AGECMHEFLRDGHEDWVSSICFSPSLEHPIVVSGSWDNTIKVWNVNGGKCERTLKGHSN-YVSTVTVSPDGSLCASGGKDGAALLWD 222

HSP 3 Score: 82.0333 bits (201), Expect = 4.108e-15
Identity = 51/173 (29.48%), Postives = 89/173 (51.45%), Query Frame = 3

Query:  324 GHEQGVSDLAFSSDSRF---LVSASDDKTIRLW---------DVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPP-VSFVKFSPN--GKFILVGTLDNTLRLWN 797
            GH   V+ LA    +     +VS S D T+  W         D         L GHT +V CV+    ++  ++ ++D ++R+WD++ G+C +    H+  V AV F+ D  +IV++  D + R+W+ + G CM   + D +   VS + FSP+     ++ G+ DNT+++WN
Sbjct:    9 GHRGWVTSLACPQQAGSYIKVVSTSRDGTVISWKANPDRHSVDSDYGLPNHRLEGHTGFVSCVSLAHATDYALTASWDRSIRMWDLRNGQCQRKFLKHTKDVLAVAFSPDDRLIVSAGRDNVIRVWNVA-GECMHEFLRDGHEDWVSSICFSPSLEHPIVVSGSWDNTIKVWN 180

[Close]

BLAST of FC900544 vs. ExPASy Swiss-Prot
Match: NLE1_PONAB (Notchless protein homolog 1 OS=Pongo abelii GN=NLE1 PE=2 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 5.009e-21
Identity = 49/119 (41.18%), Postives = 73/119 (61.34%), Query Frame = 3

Query:  309 LQKFTGHEQGVSDLAFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIW 665
            L + TGH+  ++ + FS DSR + SAS DK+I+LWD  T   L +L GH   V+ + ++  S ++VSG+ D T+++WDVK  K    LP H+D V AVD++ DG  + +   D   RIW
Sbjct:  365 LTRMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLAMDLPGHADEVYAVDWSPDGQRVASGGKDKCLRIW 483

HSP 2 Score: 90.1225 bits (222), Expect = 1.508e-17
Identity = 48/163 (29.45%), Postives = 86/163 (52.76%), Query Frame = 3

Query:  324 GHEQGVSDLAFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCL-KVLPAHSDPVTAVDF-----NRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLW 794
            GH + V  +AFS   ++L S S D T+R WD+ T T   T  GH ++V  ++++P    + SG  +  + +WD  TGK + + L  HS  +T + +     N +   + +SS DG  RIWD + G C + ++      V+ +++  +G  +   + D T+++W
Sbjct:  112 GHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCKGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQVGRTLAGHSKWITGLSWEPLHANPECRYVASSSKDGSVRIWDTTAGRC-ERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVW 272

HSP 3 Score: 86.2705 bits (212), Expect = 2.178e-16
Identity = 55/186 (29.57%), Postives = 88/186 (47.31%), Query Frame = 3

Query:  159 TQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGVSDLAFSSDSRFLVSASDDKTIRLWDVPTATCL-KTLIGHTNYVFCVNF-----NPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTL 698
            T +L GH  A+ SV FS  G+ LAS S D                          GH   V  +++S D + L S   +  I LWD  T   + +TL GH+ ++  +++     NP+   + S + D +VRIWD   G+C ++L  H+  VT + +  DG ++ ++S D   ++W A  G   +TL
Sbjct:  107 TSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTC--------KGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQVGRTLAGHSKWITGLSWEPLHANPECRYVASSSKDGSVRIWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRTL 283

HSP 4 Score: 78.9518 bits (193), Expect = 3.477e-14
Identity = 45/141 (31.91%), Postives = 71/141 (50.35%), Query Frame = 3

Query:  375 LVSASDDKTIRLWD-VPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLW 794
            LVS SDD T+ LW        L  + GH   +  V F+P S ++ S +FD+++++WD +TGK L  L  H   V  + ++ D  ++V+ S D   ++WD         L       V  V +SP+G+ +  G  D  LR+W
Sbjct:  344 LVSGSDDFTLFLWSPAEDKKPLTRMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLAMDL-PGHADEVYAVDWSPDGQRVASGGKDKCLRIW 483

[Close]

BLAST of FC900544 vs. ExPASy Swiss-Prot
Match: NLE1_MOUSE (Notchless protein homolog 1 OS=Mus musculus GN=Nle1 PE=2 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 5.009e-21
Identity = 49/119 (41.18%), Postives = 73/119 (61.34%), Query Frame = 3

Query:  309 LQKFTGHEQGVSDLAFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIW 665
            L + TGH+  ++ + FS DSR + SAS DK+I+LWD  T   L +L GH   V+ + ++  S ++VSG+ D T+++WDVK  K    LP H+D V AVD++ DG  + +   D   RIW
Sbjct:  365 LARMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLATDLPGHADEVYAVDWSPDGQRVASGGKDKCLRIW 483

HSP 2 Score: 87.0409 bits (214), Expect = 1.277e-16
Identity = 46/163 (28.22%), Postives = 85/163 (52.15%), Query Frame = 3

Query:  324 GHEQGVSDLAFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTG-KCLKVLPAHSDPVTAVDF-----NRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLW 794
            GH + V  +AFS   ++L S S D T+R WD+ T T   T  GH ++V  ++++P    + SG  +  + +WD  TG +  + L  HS  +T + +     N +   + +SS DG  R+WD + G C + ++      V+ +++  +G  +   + D T+++W
Sbjct:  112 GHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCKGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGLQVGRTLTGHSKWITGLSWEPLHMNPECRYVASSSKDGSVRVWDTTAGRC-ERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVW 272

HSP 3 Score: 85.8853 bits (211), Expect = 2.845e-16
Identity = 54/186 (29.03%), Postives = 88/186 (47.31%), Query Frame = 3

Query:  159 TQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGVSDLAFSSDSRFLVSASDDKTIRLWDVPTATCL-KTLIGHTNYVFCVNF-----NPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTL 698
            T +L GH  A+ SV FS  G+ LAS S D                          GH   V  +++S D + L S   +  I LWD  T   + +TL GH+ ++  +++     NP+   + S + D +VR+WD   G+C ++L  H+  VT + +  DG ++ ++S D   ++W A  G   +TL
Sbjct:  107 TSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTC--------KGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGLQVGRTLTGHSKWITGLSWEPLHMNPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRTL 283

HSP 4 Score: 80.4925 bits (197), Expect = 1.195e-14
Identity = 45/141 (31.91%), Postives = 73/141 (51.77%), Query Frame = 3

Query:  375 LVSASDDKTIRLWD-VPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLW 794
            LVS SDD T+ LW        L  + GH   +  V F+P S ++ S +FD+++++WD +TGK L  L  H   V  + ++ D  ++V+ S D   ++WD      + T +      V  V +SP+G+ +  G  D  LR+W
Sbjct:  344 LVSGSDDFTLFLWSPAEDKKPLARMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVK-AQKLATDLPGHADEVYAVDWSPDGQRVASGGKDKCLRIW 483

The following BLAST results are available for this feature:

BLAST of FC900544 vs. ExPASy Swiss-Prot

BLAST of FC900544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
PRP4_PONAB	1.722e-21	28.25	U4/U6 small nuclear ribonucleoprotein Prp4 OS=Pong...	[more]
PRP4_HUMAN	1.722e-21	28.25	U4/U6 small nuclear ribonucleoprotein Prp4 OS=Homo...	[more]
PRP4_BOVIN	1.722e-21	28.25	U4/U6 small nuclear ribonucleoprotein Prp4 OS=Bos ...	[more]
SMU1_DICDI	2.249e-21	31.36	WD40 repeat-containing protein smu1 OS=Dictyosteli...	[more]
PRP4_MOUSE	2.249e-21	28.25	U4/U6 small nuclear ribonucleoprotein Prp4 OS=Mus ...	[more]
KTNB1_DANRE	2.937e-21	30.06	Katanin p80 WD40-containing subunit B1 OS=Danio re...	[more]
KTNB1_CHICK	2.937e-21	28.22	Katanin p80 WD40-containing subunit B1 OS=Gallus g...	[more]
GBLP_LEIMA	2.937e-21	30.24	Guanine nucleotide-binding protein subunit beta-li...	[more]
NLE1_PONAB	5.009e-21	41.18	Notchless protein homolog 1 OS=Pongo abelii GN=NLE...	[more]
NLE1_MOUSE	5.009e-21	41.18	Notchless protein homolog 1 OS=Mus musculus GN=Nle...	[more]

Pages

Properties


Property Name	Value
Genbank description	IC0AAA28DE04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA28DE04, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC900544 ID=FC900544; Name=FC900544; organism=Citrus clementina; type=EST; length=799bp
ACATAATGCAATCTGCCGCTGCCGCGTGCTTTCTCAGCCATTGTCATTAT
TGTCTCTGGAGAATCCTTTCAGCCCCAAAACCCCCCGTTAAATTAAATTG
AAAAAAAAAAAAAATGTCATCAGACCAATCGTTAGAATCCTTCAGGCCTT
ACACCTTAACCCAAACCCTAAACGGCCACCTACGCGCCATCTCCTCTGTC
AAATTCTCCCACGATGGCCGCCTCCTTGCCTCTTCCTCCGCCGACAAAAC
CCTCCTCACCTATTCGCTCTCCAGTATTTCTAATTCCGATTCTACCCCTC
CCTCTCCTCTCCAAAAATTCACCGGCCACGAACAAGGCGTCTCCGACCTC
GCCTTCTCCTCCGACTCCCGCTTCCTCGTCTCAGCCTCCGACGACAAAAC
CATCCGTCTATGGGACGTCCCCACCGCCACCTGTCTCAAAACCCTAATCG
GCCACACAAATTACGTCTTCTGTGTCAACTTCAACCCTCAATCCAATATG
ATCGTCTCTGGCGCTTTTGACGAGACTGTCAGGATTTGGGACGTTAAGAC
CGGAAAATGTCTCAAGGTTTTGCCTGCCCACTCAGATCCTGTCACCGCCG
TTGACTTTAATCGCGACGGCACCATGATTGTCACTAGCAGTTATGATGGA
CTCTGTAGGATTTGGGATGCCAGCACCGGACATTGTATGAAAACGCTTAT
TGATGATGAAAATCCTCCAGTTTCCTTTGTTAAGTTTTCGCCAAATGGAA
AGTTTATTCTTGTTGGAACTCTCGATAATACTTTGAGACTTTGGAACTA