FC910031

Overview
NameFC910031
Unique NameFC910031
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_GRABC (NADH-quinone oxidoreductase subunit B OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=nuoB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.202e-47
Identity = 53/72 (73.61%), Postives = 62/72 (86.11%), Query Frame = 3 
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            FV++ LD +VN+ R GS+WPM+FGLACCAVEM+H    RYDLDRFG+I R SPRQSDVM+VAGTLTNKMAPA
Sbjct:   46 FVVANLDKLVNWARTGSLWPMTFGLACCAVEMIHAYMPRYDLDRFGVIPRASPRQSDVMIVAGTLTNKMAPA 117

HSP 2 Score: 93.9745 bits (232), Expect = 3.202e-47
Identity = 44/67 (65.67%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LR+VYDQMP PRWVI                 VVRGCDRIVPVD+YVPGCPPTAEA +YGI+QLQKK
Sbjct:  118 LRRVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGIMQLQKK 184
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_RICTY (NADH-quinone oxidoreductase subunit B OS=Rickettsia typhi GN=nuoB PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.211e-47
Identity = 51/72 (70.83%), Postives = 66/72 (91.67%), Query Frame = 3 
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            F++SK+D+V+++ R  S+WPM+FGLACCAVEMM   A+RYD+DRFG++FRPSPRQSD+M+VAGTLTNKMAPA
Sbjct:   21 FLLSKIDEVISWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRPSPRQSDLMIVAGTLTNKMAPA 92

HSP 2 Score: 89.7373 bits (221), Expect = 3.211e-47
Identity = 41/67 (61.19%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQM  P+WV+                 VVRGCDRIVPVD+YVPGCPPTAEA +YG++QLQKK
Sbjct:   93 LRKVYDQMTEPKWVLSMGSCANGGGYYHFSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGLMQLQKK 159
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_METPP (NADH-quinone oxidoreductase subunit B OS=Methylibium petroleiphilum (strain PM1) GN=nuoB PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.217e-47
Identity = 51/72 (70.83%), Postives = 64/72 (88.89%), Query Frame = 3 
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            F+ +  D ++N+ + GS+WPM+FGLACCAVEMMH GAARYD+DRFG++FRPSPRQSD+M+VAGTL NKMAPA
Sbjct:   11 FITTSADKLINWSKTGSLWPMTFGLACCAVEMMHAGAARYDIDRFGMLFRPSPRQSDLMIVAGTLCNKMAPA 82

HSP 2 Score: 89.7373 bits (221), Expect = 3.217e-47
Identity = 43/67 (64.18%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LR+VYDQM  PRWV+                 VVRGCDRIVPVD+YVPGCPPTAEA LYGILQLQ K
Sbjct:   83 LRRVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGILQLQAK 149
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_RICRS (NADH-quinone oxidoreductase subunit B OS=Rickettsia rickettsii (strain Sheila Smith) GN=nuoB PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.183e-47
Identity = 51/72 (70.83%), Postives = 65/72 (90.28%), Query Frame = 3 
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            F+++K+DDV+ + R  S+WPM+FGLACCAVEMM   A+RYD+DRFG++FRPSPRQSD+M+VAGTLTNKMAPA
Sbjct:   21 FLLTKVDDVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRPSPRQSDLMIVAGTLTNKMAPA 92

HSP 2 Score: 89.7373 bits (221), Expect = 4.183e-47
Identity = 41/67 (61.19%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQM  P+WV+                 VVRGCDRIVPVD+YVPGCPPTAEA +YG++QLQKK
Sbjct:   93 LRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGLMQLQKK 159
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_RICRO (NADH-quinone oxidoreductase subunit B OS=Rickettsia rickettsii (strain Iowa) GN=nuoB PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.183e-47
Identity = 51/72 (70.83%), Postives = 65/72 (90.28%), Query Frame = 3 
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            F+++K+DDV+ + R  S+WPM+FGLACCAVEMM   A+RYD+DRFG++FRPSPRQSD+M+VAGTLTNKMAPA
Sbjct:   21 FLLTKVDDVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRPSPRQSDLMIVAGTLTNKMAPA 92

HSP 2 Score: 89.7373 bits (221), Expect = 4.183e-47
Identity = 41/67 (61.19%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQM  P+WV+                 VVRGCDRIVPVD+YVPGCPPTAEA +YG++QLQKK
Sbjct:   93 LRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGLMQLQKK 159
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_RICPU (NADH-quinone oxidoreductase subunit B OS=Rickettsia peacockii (strain Rustic) GN=nuoB PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.183e-47
Identity = 51/72 (70.83%), Postives = 65/72 (90.28%), Query Frame = 3 
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            F+++K+DDV+ + R  S+WPM+FGLACCAVEMM   A+RYD+DRFG++FRPSPRQSD+M+VAGTLTNKMAPA
Sbjct:   21 FLLTKVDDVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRPSPRQSDLMIVAGTLTNKMAPA 92

HSP 2 Score: 89.7373 bits (221), Expect = 4.183e-47
Identity = 41/67 (61.19%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQM  P+WV+                 VVRGCDRIVPVD+YVPGCPPTAEA +YG++QLQKK
Sbjct:   93 LRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGLMQLQKK 159
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_RICPR (NADH-quinone oxidoreductase subunit B OS=Rickettsia prowazekii GN=nuoB PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.183e-47
Identity = 51/72 (70.83%), Postives = 66/72 (91.67%), Query Frame = 3 
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            F++SK+D+V+++ R  S+WPM+FGLACCAVEMM   A+RYD+DRFG++FRPSPRQSD+M+VAGTLTNKMAPA
Sbjct:   21 FLLSKVDEVISWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRPSPRQSDLMIVAGTLTNKMAPA 92

HSP 2 Score: 89.7373 bits (221), Expect = 4.183e-47
Identity = 41/67 (61.19%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQM  P+WV+                 VVRGCDRIVPVD+YVPGCPPTAEA +YG++QLQKK
Sbjct:   93 LRKVYDQMTEPKWVLSMGSCANGGGYYHFSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGLMQLQKK 159
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_RICFE (NADH-quinone oxidoreductase subunit B OS=Rickettsia felis GN=nuoB PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.183e-47
Identity = 51/72 (70.83%), Postives = 65/72 (90.28%), Query Frame = 3 
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            F+++K+DDV+ + R  S+WPM+FGLACCAVEMM   A+RYD+DRFG++FRPSPRQSD+M+VAGTLTNKMAPA
Sbjct:   21 FLLTKVDDVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRPSPRQSDLMIVAGTLTNKMAPA 92

HSP 2 Score: 89.7373 bits (221), Expect = 4.183e-47
Identity = 41/67 (61.19%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQM  P+WV+                 VVRGCDRIVPVD+YVPGCPPTAEA +YG++QLQKK
Sbjct:   93 LRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGLMQLQKK 159
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_RICCN (NADH-quinone oxidoreductase subunit B OS=Rickettsia conorii GN=nuoB PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.183e-47
Identity = 51/72 (70.83%), Postives = 65/72 (90.28%), Query Frame = 3 
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            F+++K+DDV+ + R  S+WPM+FGLACCAVEMM   A+RYD+DRFG++FRPSPRQSD+M+VAGTLTNKMAPA
Sbjct:   21 FLLTKVDDVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRPSPRQSDLMIVAGTLTNKMAPA 92

HSP 2 Score: 89.7373 bits (221), Expect = 4.183e-47
Identity = 41/67 (61.19%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQM  P+WV+                 VVRGCDRIVPVD+YVPGCPPTAEA +YG++QLQKK
Sbjct:   93 LRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGLMQLQKK 159
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_RICCK (NADH-quinone oxidoreductase subunit B OS=Rickettsia canadensis (strain McKiel) GN=nuoB PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.183e-47
Identity = 51/72 (70.83%), Postives = 65/72 (90.28%), Query Frame = 3 
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            F+++K+DDV+ + R  S+WPM+FGLACCAVEMM   A+RYD+DRFG++FRPSPRQSD+M+VAGTLTNKMAPA
Sbjct:   21 FLLTKVDDVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRPSPRQSDLMIVAGTLTNKMAPA 92

HSP 2 Score: 89.7373 bits (221), Expect = 4.183e-47
Identity = 41/67 (61.19%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQM  P+WV+                 VVRGCDRIVPVDIY+PGCPPTAEA +YG++QLQKK
Sbjct:   93 LRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGCDRIVPVDIYIPGCPPTAEALIYGLMQLQKK 159
The following BLAST results are available for this feature:
BLAST of FC910031 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB_GRABC3.202e-4773.61NADH-quinone oxidoreductase subunit B OS=Granuliba... [more]
NUOB_RICTY3.211e-4770.83NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NUOB_METPP3.217e-4770.83NADH-quinone oxidoreductase subunit B OS=Methylibi... [more]
NUOB_RICRS4.183e-4770.83NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NUOB_RICRO4.183e-4770.83NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NUOB_RICPU4.183e-4770.83NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NUOB_RICPR4.183e-4770.83NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NUOB_RICFE4.183e-4770.83NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NUOB_RICCN4.183e-4770.83NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NUOB_RICCK4.183e-4770.83NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA60BG09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60BG09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910031 ID=FC910031; Name=FC910031; organism=Citrus clementina; type=EST; length=724bp
CCATTTCTCTCTCCCTTGCCCCCGTGTGAGAAAACTAAACCAAACCCCAC
CCCCCCCCCCCACCCCACAACCCCCAAAACACAAGCCCAAAAAAAAAAAA
AAAAACTATGGCGGTACTCCCCAAAAACACTGCCCCGCCCCCCCCTCTCC
TCCTCTCCCAACGCCCCCCCTGTCTCCCCACGACCGTCCCCTCTCTCTCC
TCGGCCTCCGGCTCCTCCTCCTCCTCCTCCTCGCAGCCCACCTCCCACGC
TCGCCCTCCACCGCCCTCGACCACAAGTCCAGGCGGTATCTCAAAGACGG
CGGAATTCGTGATCTCTAAATTGGATGATGTCGTCAACTATATTCGTCGC
GGCTCCATCTGGCCCATGTCCTTCGGGCTGGCCTGCTGCGCCGTCGAGAT
GATGCACACCGGTGCTGCTCGTTACGATTTAGATCGATTCGGTATCATTT
TCAGGCCCAGCCCTCGCCAATCCGATGTCATGGTCGTAGCTGGCACACTC
ACAAACAAGATGGCCCCTGCCCCTTCGCAAGGTTTATGATCAAATGCCAA
ATCCTAGGTGGGTCATTTCTATGGGAAGCGGTGCAAATGGTGGTGGATAT
TATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGGATTGTCCCCGT
GGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGCCCCACTCTATG
GAATTCTCCAACTGCAGAAAAAGA
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