FC910031

Overview
NameFC910031
Unique NameFC910031
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_COXB1 (NADH-quinone oxidoreductase subunit B OS=Coxiella burnetii (strain CbuK_Q154) GN=nuoB PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.416e-44
Identity = 51/73 (69.86%), Postives = 63/73 (86.30%), Query Frame = 3
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPA 521
            F+++ LDD++ + R GS+WPM+FGLACCAVEMM   ++RYDLDRFG  +FRPSPRQSDVM+VAGTL NKMAPA
Sbjct:   10 FLLTSLDDLMRWARSGSLWPMTFGLACCAVEMMQCASSRYDLDRFGAGLFRPSPRQSDVMIVAGTLCNKMAPA 82          

HSP 2 Score: 88.1965 bits (217), Expect = 2.416e-44
Identity = 42/67 (62.69%), Postives = 45/67 (67.16%), Query Frame = 1
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQM  PRWVI                 VVRGCDRIVPVD+YVPGCPPTAEA  YGI+QL+ K
Sbjct:   83 LRKVYDQMAEPRWVISMGSCANGGGYYHYAYSVVRGCDRIVPVDVYVPGCPPTAEALFYGIMQLRNK 149          
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_ACIAC (NADH-quinone oxidoreductase subunit B OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=nuoB PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.417e-44
Identity = 50/73 (68.49%), Postives = 60/73 (82.19%), Query Frame = 3
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPA 521
            F+ +  D VVN+ + GS+WPM+FGLACCAVEMMH  AARYD+ RFG  +FR SPRQSD+M+VAGTL NKMAPA
Sbjct:   10 FITTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAAAARYDIGRFGAEVFRASPRQSDLMIVAGTLCNKMAPA 82          

HSP 2 Score: 90.8929 bits (224), Expect = 2.417e-44
Identity = 43/67 (64.18%), Postives = 47/67 (70.15%), Query Frame = 1
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQM  PRWVI                 VVRGCDRIVPVD+YVPGCPPTAEA +YGI+QLQ+K
Sbjct:   83 LRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGIIQLQQK 149          
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_RHOCS (NADH-quinone oxidoreductase subunit B OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=nuoB PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.135e-44
Identity = 48/72 (66.67%), Postives = 63/72 (87.50%), Query Frame = 3
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            +++++ D ++++ R GS+WPM+FGLACCAVEM+H   ARYDLDRFG+I RPSPRQSDVM+VAGT+ NKMAPA
Sbjct:   46 YLVARFDALMDWARTGSLWPMTFGLACCAVEMIHAYMARYDLDRFGVIPRPSPRQSDVMIVAGTVCNKMAPA 117          

HSP 2 Score: 88.9669 bits (219), Expect = 3.135e-44
Identity = 44/67 (65.67%), Postives = 46/67 (68.66%), Query Frame = 1
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQM  PRWVI                 VVRG DRIVPVDIYVPGCPPTAEA +YG+LQLQKK
Sbjct:  118 LRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGVDRIVPVDIYVPGCPPTAEALVYGVLQLQKK 184          
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_WOLPP (NADH-quinone oxidoreductase subunit B OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=nuoB PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.146e-44
Identity = 55/80 (68.75%), Postives = 67/80 (83.75%), Query Frame = 3
Query:  294 KTAEFVISKLDDVVNYI----RRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            K   F+I+K  D+++YI    R GS+WPM+FGLACCAVEMMHT ++RYDLDR+GIIFR SPRQ+DVM+VAGTLTNKMA A
Sbjct:   14 KKEGFLITKFGDLIDYIMNWARSGSLWPMTFGLACCAVEMMHTASSRYDLDRYGIIFRASPRQADVMIVAGTLTNKMAAA 93          

HSP 2 Score: 83.1889 bits (204), Expect = 3.146e-44
Identity = 40/67 (59.70%), Postives = 46/67 (68.66%), Query Frame = 1
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQM +P++V+                 VVRGCDRIVPVD+YVPGCPPTAEA LYG+L LQ K
Sbjct:   94 LRKVYDQMADPKYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGMLCLQNK 160          
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_DELAS (NADH-quinone oxidoreductase subunit B OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=nuoB PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 5.350e-44
Identity = 50/73 (68.49%), Postives = 60/73 (82.19%), Query Frame = 3
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPA 521
            F+ +  D VVN+ + GS+WPM+FGLACCAVEMMH  AARYD+ RFG  +FR SPRQSD+M+VAGTL NKMAPA
Sbjct:   10 FITTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAAAARYDIGRFGSEVFRASPRQSDLMIVAGTLCNKMAPA 82          

HSP 2 Score: 90.1225 bits (222), Expect = 5.350e-44
Identity = 42/67 (62.69%), Postives = 47/67 (70.15%), Query Frame = 1
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            +RKVYDQM  PRWVI                 VVRGCDRIVPVD+YVPGCPPTAEA +YGI+QLQ+K
Sbjct:   83 MRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGIIQLQQK 149          
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_ANAPZ (NADH-quinone oxidoreductase subunit B OS=Anaplasma phagocytophilum (strain HZ) GN=nuoB PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 6.956e-44
Identity = 54/80 (67.50%), Postives = 66/80 (82.50%), Query Frame = 3
Query:  294 KTAEFVISKLDD----VVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            K   FV+++  D    V+ + R GS+WPM+FGLACCAVEMMHT A+RYDLDR+GI+FR SPRQ+DVM+VAGTLTNKMAPA
Sbjct:   17 KDQGFVVTQFSDLIERVLKWARSGSLWPMTFGLACCAVEMMHTAASRYDLDRYGIMFRASPRQADVMIVAGTLTNKMAPA 96          

HSP 2 Score: 83.1889 bits (204), Expect = 6.956e-44
Identity = 40/67 (59.70%), Postives = 47/67 (70.15%), Query Frame = 1
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LR+VYDQM +P++VI                 VVRGCDR+VPVDIYVPGCPPTAEA LYG+L LQ+K
Sbjct:   97 LRRVYDQMADPKYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGLLCLQQK 163          
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_WOLWR (NADH-quinone oxidoreductase subunit B OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=nuoB PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 6.962e-44
Identity = 54/83 (65.06%), Postives = 67/83 (80.72%), Query Frame = 3
Query:  285 GISKTAEFVISKLDDVVNYI----RRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            G  K   F+++K  D+ +Y+    R GS+WPM+FGLACCAVEMMHT ++RYDLDR+GI+FR SPRQSDVM+VAGTLTNKMA A
Sbjct:   12 GRYKKEGFLVTKFGDLTDYVMNWARSGSLWPMTFGLACCAVEMMHTASSRYDLDRYGIMFRASPRQSDVMIVAGTLTNKMAAA 94          

HSP 2 Score: 83.5741 bits (205), Expect = 6.962e-44
Identity = 41/67 (61.19%), Postives = 46/67 (68.66%), Query Frame = 1
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQM +P++VI                 VVRGCDRIVPVD+YVPGCPPTAEA LYG+L LQ K
Sbjct:   95 LRKVYDQMADPKYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGMLCLQNK 161          
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_WOLPM (NADH-quinone oxidoreductase subunit B OS=Wolbachia pipientis wMel GN=nuoB PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 6.962e-44
Identity = 54/83 (65.06%), Postives = 67/83 (80.72%), Query Frame = 3
Query:  285 GISKTAEFVISKLDDVVNYI----RRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            G  K   F+++K  D+ +Y+    R GS+WPM+FGLACCAVEMMHT ++RYDLDR+GI+FR SPRQSDVM+VAGTLTNKMA A
Sbjct:   12 GRYKKEGFLVTKFGDLTDYVMNWARSGSLWPMTFGLACCAVEMMHTASSRYDLDRYGIMFRASPRQSDVMIVAGTLTNKMAAA 94          

HSP 2 Score: 83.5741 bits (205), Expect = 6.962e-44
Identity = 41/67 (61.19%), Postives = 46/67 (68.66%), Query Frame = 1
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQM +P++VI                 VVRGCDRIVPVD+YVPGCPPTAEA LYG+L LQ K
Sbjct:   95 LRKVYDQMADPKYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGMLCLQNK 161          
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_VEREI (NADH-quinone oxidoreductase subunit B OS=Verminephrobacter eiseniae (strain EF01-2) GN=nuoB PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.086e-44
Identity = 49/73 (67.12%), Postives = 61/73 (83.56%), Query Frame = 3
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPA 521
            F+ +  D VVN+ + GS+WPM+FGLACCAVEM+H+ AARYDL RFG  +FR SPRQ+D+M+VAGTL NKMAPA
Sbjct:   10 FITTSYDSVVNWAKTGSLWPMTFGLACCAVEMIHSAAARYDLARFGAEVFRASPRQADLMIVAGTLCNKMAPA 82          

HSP 2 Score: 90.8929 bits (224), Expect = 9.086e-44
Identity = 43/67 (64.18%), Postives = 47/67 (70.15%), Query Frame = 1
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQM  PRWV+                 VVRGCDRIVPVD+YVPGCPPTAEA +YGILQLQ+K
Sbjct:   83 LRKVYDQMSEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGILQLQQK 149          
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_WOLTR (NADH-quinone oxidoreductase subunit B OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=nuoB PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.182e-43
Identity = 51/69 (73.91%), Postives = 62/69 (89.86%), Query Frame = 3
Query:  315 SKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            S +D V+N+ R GS+WPM+FGLACCAVEMMHT ++RYDLDR+GI+FR SPRQ+DVM+VAGTLTNKMA A
Sbjct:   26 SLIDYVINWARSGSLWPMTFGLACCAVEMMHTASSRYDLDRYGIMFRASPRQADVMIVAGTLTNKMAAA 94          

HSP 2 Score: 83.5741 bits (205), Expect = 1.182e-43
Identity = 41/67 (61.19%), Postives = 46/67 (68.66%), Query Frame = 1
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQM +P++V+                 VVRGCDRIVPVDIYVPGCPPTAEA LYG+L LQ K
Sbjct:   95 LRKVYDQMADPKYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGMLCLQNK 161          
The following BLAST results are available for this feature:
BLAST of FC910031 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB_COXB12.416e-4469.86NADH-quinone oxidoreductase subunit B OS=Coxiella ... [more]
NUOB_ACIAC2.417e-4468.49NADH-quinone oxidoreductase subunit B OS=Acidovora... [more]
NUOB_RHOCS3.135e-4466.67NADH-quinone oxidoreductase subunit B OS=Rhodospir... [more]
NUOB_WOLPP3.146e-4468.75NADH-quinone oxidoreductase subunit B OS=Wolbachia... [more]
NUOB_DELAS5.350e-4468.49NADH-quinone oxidoreductase subunit B OS=Delftia a... [more]
NUOB_ANAPZ6.956e-4467.50NADH-quinone oxidoreductase subunit B OS=Anaplasma... [more]
NUOB_WOLWR6.962e-4465.06NADH-quinone oxidoreductase subunit B OS=Wolbachia... [more]
NUOB_WOLPM6.962e-4465.06NADH-quinone oxidoreductase subunit B OS=Wolbachia... [more]
NUOB_VEREI9.086e-4467.12NADH-quinone oxidoreductase subunit B OS=Vermineph... [more]
NUOB_WOLTR1.182e-4373.91NADH-quinone oxidoreductase subunit B OS=Wolbachia... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA60BG09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60BG09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910031 ID=FC910031; Name=FC910031; organism=Citrus clementina; type=EST; length=724bp
CCATTTCTCTCTCCCTTGCCCCCGTGTGAGAAAACTAAACCAAACCCCAC
CCCCCCCCCCCACCCCACAACCCCCAAAACACAAGCCCAAAAAAAAAAAA
AAAAACTATGGCGGTACTCCCCAAAAACACTGCCCCGCCCCCCCCTCTCC
TCCTCTCCCAACGCCCCCCCTGTCTCCCCACGACCGTCCCCTCTCTCTCC
TCGGCCTCCGGCTCCTCCTCCTCCTCCTCCTCGCAGCCCACCTCCCACGC
TCGCCCTCCACCGCCCTCGACCACAAGTCCAGGCGGTATCTCAAAGACGG
CGGAATTCGTGATCTCTAAATTGGATGATGTCGTCAACTATATTCGTCGC
GGCTCCATCTGGCCCATGTCCTTCGGGCTGGCCTGCTGCGCCGTCGAGAT
GATGCACACCGGTGCTGCTCGTTACGATTTAGATCGATTCGGTATCATTT
TCAGGCCCAGCCCTCGCCAATCCGATGTCATGGTCGTAGCTGGCACACTC
ACAAACAAGATGGCCCCTGCCCCTTCGCAAGGTTTATGATCAAATGCCAA
ATCCTAGGTGGGTCATTTCTATGGGAAGCGGTGCAAATGGTGGTGGATAT
TATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGGATTGTCCCCGT
GGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGCCCCACTCTATG
GAATTCTCCAACTGCAGAAAAAGA
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