FC910031 | Citrus Genome Database

Overview


Name	FC910031
Unique Name	FC910031
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	724

Libraries


Library Name	Type
IVIA1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_ECOHS (NADH-quinone oxidoreductase subunit B OS=Escherichia coli O9:H4 (strain HS) GN=nuoB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.083e-25
Identity = 39/70 (55.71%), Postives = 53/70 (75.71%), Query Frame = 3

Query:  312 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAP 518
            + KL+D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP
Sbjct:   39 MGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAP 108

HSP 2 Score: 56.225 bits (134), Expect = 2.083e-25
Identity = 25/66 (37.88%), Postives = 39/66 (59.09%), Query Frame = 1

Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQK 720
            ++++YDQM  P+WVI                 VV+G D+ +PVD+Y+PGCPP  EA +  ++ LQ+
Sbjct:  110 IQRLYDQMLEPKWVISMGACANSGGMYDIYS-VVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQE 174

BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_ECODH (NADH-quinone oxidoreductase subunit B OS=Escherichia coli (strain K12 / DH10B) GN=nuoB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.083e-25
Identity = 39/70 (55.71%), Postives = 53/70 (75.71%), Query Frame = 3

Query:  312 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAP 518
            + KL+D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP
Sbjct:   39 MGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAP 108

HSP 2 Score: 56.225 bits (134), Expect = 2.083e-25
Identity = 25/66 (37.88%), Postives = 39/66 (59.09%), Query Frame = 1

Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQK 720
            ++++YDQM  P+WVI                 VV+G D+ +PVD+Y+PGCPP  EA +  ++ LQ+
Sbjct:  110 IQRLYDQMLEPKWVISMGACANSGGMYDIYS-VVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQE 174

BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_ECOBW (NADH-quinone oxidoreductase subunit B OS=Escherichia coli (strain K12 / BW2952) GN=nuoB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.083e-25
Identity = 39/70 (55.71%), Postives = 53/70 (75.71%), Query Frame = 3

Query:  312 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAP 518
            + KL+D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP
Sbjct:   39 MGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAP 108

HSP 2 Score: 56.225 bits (134), Expect = 2.083e-25
Identity = 25/66 (37.88%), Postives = 39/66 (59.09%), Query Frame = 1

Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQK 720
            ++++YDQM  P+WVI                 VV+G D+ +PVD+Y+PGCPP  EA +  ++ LQ+
Sbjct:  110 IQRLYDQMLEPKWVISMGACANSGGMYDIYS-VVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQE 174

BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_ECO8A (NADH-quinone oxidoreductase subunit B OS=Escherichia coli O8 (strain IAI1) GN=nuoB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.083e-25
Identity = 39/70 (55.71%), Postives = 53/70 (75.71%), Query Frame = 3

Query:  312 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAP 518
            + KL+D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP
Sbjct:   39 MGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAP 108

HSP 2 Score: 56.225 bits (134), Expect = 2.083e-25
Identity = 25/66 (37.88%), Postives = 39/66 (59.09%), Query Frame = 1

Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQK 720
            ++++YDQM  P+WVI                 VV+G D+ +PVD+Y+PGCPP  EA +  ++ LQ+
Sbjct:  110 IQRLYDQMLEPKWVISMGACANSGGMYDIYS-VVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQE 174

BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_ECO81 (NADH-quinone oxidoreductase subunit B OS=Escherichia coli O81 (strain ED1a) GN=nuoB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.083e-25
Identity = 39/70 (55.71%), Postives = 53/70 (75.71%), Query Frame = 3

Query:  312 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAP 518
            + KL+D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP
Sbjct:   39 MGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAP 108

HSP 2 Score: 56.225 bits (134), Expect = 2.083e-25
Identity = 25/66 (37.88%), Postives = 39/66 (59.09%), Query Frame = 1

Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQK 720
            ++++YDQM  P+WVI                 VV+G D+ +PVD+Y+PGCPP  EA +  ++ LQ+
Sbjct:  110 IQRLYDQMLEPKWVISMGACANSGGMYDIYS-VVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQE 174

BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_ECO7I (NADH-quinone oxidoreductase subunit B OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=nuoB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.083e-25
Identity = 39/70 (55.71%), Postives = 53/70 (75.71%), Query Frame = 3

Query:  312 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAP 518
            + KL+D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP
Sbjct:   39 MGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAP 108

HSP 2 Score: 56.225 bits (134), Expect = 2.083e-25
Identity = 25/66 (37.88%), Postives = 39/66 (59.09%), Query Frame = 1

Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQK 720
            ++++YDQM  P+WVI                 VV+G D+ +PVD+Y+PGCPP  EA +  ++ LQ+
Sbjct:  110 IQRLYDQMLEPKWVISMGACANSGGMYDIYS-VVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQE 174

BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_ECO5E (NADH-quinone oxidoreductase subunit B OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=nuoB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.083e-25
Identity = 39/70 (55.71%), Postives = 53/70 (75.71%), Query Frame = 3

Query:  312 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAP 518
            + KL+D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP
Sbjct:   39 MGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAP 108

HSP 2 Score: 56.225 bits (134), Expect = 2.083e-25
Identity = 25/66 (37.88%), Postives = 39/66 (59.09%), Query Frame = 1

Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQK 720
            ++++YDQM  P+WVI                 VV+G D+ +PVD+Y+PGCPP  EA +  ++ LQ+
Sbjct:  110 IQRLYDQMLEPKWVISMGACANSGGMYDIYS-VVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQE 174

BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_ECO57 (NADH-quinone oxidoreductase subunit B OS=Escherichia coli O157:H7 GN=nuoB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.083e-25
Identity = 39/70 (55.71%), Postives = 53/70 (75.71%), Query Frame = 3

Query:  312 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAP 518
            + KL+D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP
Sbjct:   39 MGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAP 108

HSP 2 Score: 56.225 bits (134), Expect = 2.083e-25
Identity = 25/66 (37.88%), Postives = 39/66 (59.09%), Query Frame = 1

Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQK 720
            ++++YDQM  P+WVI                 VV+G D+ +PVD+Y+PGCPP  EA +  ++ LQ+
Sbjct:  110 IQRLYDQMLEPKWVISMGACANSGGMYDIYS-VVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQE 174

BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_ECO55 (NADH-quinone oxidoreductase subunit B OS=Escherichia coli (strain 55989 / EAEC) GN=nuoB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.083e-25
Identity = 39/70 (55.71%), Postives = 53/70 (75.71%), Query Frame = 3

Query:  312 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAP 518
            + KL+D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP
Sbjct:   39 MGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAP 108

HSP 2 Score: 56.225 bits (134), Expect = 2.083e-25
Identity = 25/66 (37.88%), Postives = 39/66 (59.09%), Query Frame = 1

Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQK 720
            ++++YDQM  P+WVI                 VV+G D+ +PVD+Y+PGCPP  EA +  ++ LQ+
Sbjct:  110 IQRLYDQMLEPKWVISMGACANSGGMYDIYS-VVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQE 174

BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_ECO45 (NADH-quinone oxidoreductase subunit B OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=nuoB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.083e-25
Identity = 39/70 (55.71%), Postives = 53/70 (75.71%), Query Frame = 3

Query:  312 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAP 518
            + KL+D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP
Sbjct:   39 MGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAP 108

HSP 2 Score: 56.225 bits (134), Expect = 2.083e-25
Identity = 25/66 (37.88%), Postives = 39/66 (59.09%), Query Frame = 1

Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQK 720
            ++++YDQM  P+WVI                 VV+G D+ +PVD+Y+PGCPP  EA +  ++ LQ+
Sbjct:  110 IQRLYDQMLEPKWVISMGACANSGGMYDIYS-VVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQE 174

The following BLAST results are available for this feature:

BLAST of FC910031 vs. ExPASy Swiss-Prot

BLAST of FC910031 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
NUOB_ECOHS	2.083e-25	55.71	NADH-quinone oxidoreductase subunit B OS=Escherich...	[more]
NUOB_ECODH	2.083e-25	55.71	NADH-quinone oxidoreductase subunit B OS=Escherich...	[more]
NUOB_ECOBW	2.083e-25	55.71	NADH-quinone oxidoreductase subunit B OS=Escherich...	[more]
NUOB_ECO8A	2.083e-25	55.71	NADH-quinone oxidoreductase subunit B OS=Escherich...	[more]
NUOB_ECO81	2.083e-25	55.71	NADH-quinone oxidoreductase subunit B OS=Escherich...	[more]
NUOB_ECO7I	2.083e-25	55.71	NADH-quinone oxidoreductase subunit B OS=Escherich...	[more]
NUOB_ECO5E	2.083e-25	55.71	NADH-quinone oxidoreductase subunit B OS=Escherich...	[more]
NUOB_ECO57	2.083e-25	55.71	NADH-quinone oxidoreductase subunit B OS=Escherich...	[more]
NUOB_ECO55	2.083e-25	55.71	NADH-quinone oxidoreductase subunit B OS=Escherich...	[more]
NUOB_ECO45	2.083e-25	55.71	NADH-quinone oxidoreductase subunit B OS=Escherich...	[more]

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Properties


Property Name	Value
Genbank description	IC0AAA60BG09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60BG09, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC910031 ID=FC910031; Name=FC910031; organism=Citrus clementina; type=EST; length=724bp
CCATTTCTCTCTCCCTTGCCCCCGTGTGAGAAAACTAAACCAAACCCCAC
CCCCCCCCCCCACCCCACAACCCCCAAAACACAAGCCCAAAAAAAAAAAA
AAAAACTATGGCGGTACTCCCCAAAAACACTGCCCCGCCCCCCCCTCTCC
TCCTCTCCCAACGCCCCCCCTGTCTCCCCACGACCGTCCCCTCTCTCTCC
TCGGCCTCCGGCTCCTCCTCCTCCTCCTCCTCGCAGCCCACCTCCCACGC
TCGCCCTCCACCGCCCTCGACCACAAGTCCAGGCGGTATCTCAAAGACGG
CGGAATTCGTGATCTCTAAATTGGATGATGTCGTCAACTATATTCGTCGC
GGCTCCATCTGGCCCATGTCCTTCGGGCTGGCCTGCTGCGCCGTCGAGAT
GATGCACACCGGTGCTGCTCGTTACGATTTAGATCGATTCGGTATCATTT
TCAGGCCCAGCCCTCGCCAATCCGATGTCATGGTCGTAGCTGGCACACTC
ACAAACAAGATGGCCCCTGCCCCTTCGCAAGGTTTATGATCAAATGCCAA
ATCCTAGGTGGGTCATTTCTATGGGAAGCGGTGCAAATGGTGGTGGATAT
TATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGGATTGTCCCCGT
GGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGCCCCACTCTATG
GAATTCTCCAACTGCAGAAAAAGA