FC910031

Overview
NameFC910031
Unique NameFC910031
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NDHK_CYCTA (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Cycas taitungensis GN=ndhK PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.892e-24
Identity = 30/71 (42.25%), Postives = 51/71 (71.83%), Query Frame = 3 
Query:  309 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            + + L+D+ N+ R  S+WP+ +G +CC +E      +R+D DR+G++ R SPRQ+D+++ AGT+T KMAP+
Sbjct:   18 ISTTLNDLSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIITAGTVTMKMAPS 88

HSP 2 Score: 56.9954 bits (136), Expect = 2.892e-24
Identity = 27/68 (39.71%), Postives = 41/68 (60.29%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXX-VVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            L ++Y+QMP P++VI                   VRG D+++PVD+Y+PGCPP  EA +  I++L+KK
Sbjct:   89 LVRLYEQMPGPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAIIDAIIKLRKK 156
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NDHK_CRYJA (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Cryptomeria japonica GN=ndhK PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 2.899e-24
Identity = 34/76 (44.74%), Postives = 54/76 (71.05%), Query Frame = 3 
Query:  297 TAEFVISK-LDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            T+  VIS  L+D+ N+ R  S+WP+ +G +CC +E      +R+D DR+G++ R SPRQ+D+++ AGT+T KMAP+
Sbjct:   13 TSNSVISTTLNDLSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLLITAGTVTMKMAPS 88

HSP 2 Score: 55.8398 bits (133), Expect = 2.899e-24
Identity = 27/68 (39.71%), Postives = 41/68 (60.29%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXX-VVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            L ++Y+QMP P++VI                   VRG D+++PVDIY+PGCPP  EA +  I++L++K
Sbjct:   89 LVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDIYLPGCPPKPEAIIDAIIKLREK 156
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NDHK_PEA (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Pisum sativum GN=ndhK PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.902e-24
Identity = 35/77 (45.45%), Postives = 54/77 (70.13%), Query Frame = 3 
Query:  294 KTAEFVISK-LDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            KT   VIS  L+D+ N+ R  S+WP+ +G +CC +E      +R+D DR+G++ R SPRQ+D+++ AGT+T KMAP+
Sbjct:   12 KTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPS 88

HSP 2 Score: 56.225 bits (134), Expect = 2.902e-24
Identity = 27/68 (39.71%), Postives = 40/68 (58.82%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXX-VVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            L ++Y+QMP P++VI                   VRG D+++PVD+Y+PGCPP  EA +  I +L+KK
Sbjct:   89 LVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKK 156
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_PROMH (NADH-quinone oxidoreductase subunit B OS=Proteus mirabilis (strain HI4320) GN=nuoB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.903e-24
Identity = 38/67 (56.72%), Postives = 49/67 (73.13%), Query Frame = 3 
Query:  321 LDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAP 518
            L DVVN+ R+ S+WP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D MVVAGT   KMAP
Sbjct:   46 LHDVVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGSEVLRASPRQADFMVVAGTCFTKMAP 112

HSP 2 Score: 56.225 bits (134), Expect = 2.903e-24
Identity = 25/66 (37.88%), Postives = 39/66 (59.09%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQK 720
            ++++YDQM  P+WVI                 VV+G D+ +PVD+Y+PGCPP  EA +  ++ LQ+
Sbjct:  114 IQRLYDQMLEPKWVISMGACANSGGMYDIYS-VVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQE 178
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NDHK_ANGEV (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Angiopteris evecta GN=ndhK PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.768e-24
Identity = 30/71 (42.25%), Postives = 50/71 (70.42%), Query Frame = 3 
Query:  309 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            + + L+D  N+ R  S+WP+ +G +CC +E      +R+D DR+G++ R SPRQ+D+++ AGT+T KMAP+
Sbjct:   36 ISTNLNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIITAGTVTMKMAPS 106

HSP 2 Score: 56.9954 bits (136), Expect = 3.768e-24
Identity = 27/68 (39.71%), Postives = 41/68 (60.29%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXX-VVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            L ++Y+QMP P++VI                   VRG D+++PVD+Y+PGCPP  EA +  I++L+KK
Sbjct:  107 LVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGIDKLIPVDVYLPGCPPKPEAIIDAIIKLRKK 174
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_ENT38 (NADH-quinone oxidoreductase subunit B OS=Enterobacter sp. (strain 638) GN=nuoB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.777e-24
Identity = 37/67 (55.22%), Postives = 50/67 (74.63%), Query Frame = 3 
Query:  321 LDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAP 518
            + D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP
Sbjct:   46 MHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAP 112

HSP 2 Score: 55.8398 bits (133), Expect = 3.777e-24
Identity = 25/65 (38.46%), Postives = 38/65 (58.46%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQ 717
            ++++YDQM  P+WVI                 VV+G D+ +PVD+Y+PGCPP  EA +  ++ LQ
Sbjct:  114 IQRLYDQMLEPKWVISMGACANSGGMYDIYS-VVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQ 177
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NDHK_SOLTU (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Solanum tuberosum GN=ndhK PE=3 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 4.916e-24
Identity = 31/71 (43.66%), Postives = 51/71 (71.83%), Query Frame = 3 
Query:  309 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            + + L+D+ N+ R  S+WP+ +G +CC +E      +R+D DR+G++ R SPRQSD+++ AGT+T KMAP+
Sbjct:   18 ISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQSDLILTAGTVTMKMAPS 88

HSP 2 Score: 56.225 bits (134), Expect = 4.916e-24
Identity = 27/68 (39.71%), Postives = 40/68 (58.82%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXX-VVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            L ++Y+QMP P++VI                   VRG D+++PVD+Y+PGCPP  EA +  I +L+KK
Sbjct:   89 LVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKK 156
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NDHK_SOLLC (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Solanum lycopersicum GN=ndhK PE=3 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 4.916e-24
Identity = 31/71 (43.66%), Postives = 51/71 (71.83%), Query Frame = 3 
Query:  309 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            + + L+D+ N+ R  S+WP+ +G +CC +E      +R+D DR+G++ R SPRQSD+++ AGT+T KMAP+
Sbjct:   18 ISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQSDLILTAGTVTMKMAPS 88

HSP 2 Score: 56.225 bits (134), Expect = 4.916e-24
Identity = 27/68 (39.71%), Postives = 40/68 (58.82%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXX-VVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            L ++Y+QMP P++VI                   VRG D+++PVD+Y+PGCPP  EA +  I +L+KK
Sbjct:   89 LVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKK 156
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NDHK_SOLBU (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Solanum bulbocastanum GN=ndhK PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 4.916e-24
Identity = 31/71 (43.66%), Postives = 51/71 (71.83%), Query Frame = 3 
Query:  309 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            + + L+D+ N+ R  S+WP+ +G +CC +E      +R+D DR+G++ R SPRQSD+++ AGT+T KMAP+
Sbjct:   18 ISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQSDLILTAGTVTMKMAPS 88

HSP 2 Score: 56.225 bits (134), Expect = 4.916e-24
Identity = 27/68 (39.71%), Postives = 40/68 (58.82%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXX-VVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            L ++Y+QMP P++VI                   VRG D+++PVD+Y+PGCPP  EA +  I +L+KK
Sbjct:   89 LVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKK 156
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_PHOLL (NADH-quinone oxidoreductase subunit B OS=Photorhabdus luminescens subsp. laumondii GN=nuoB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.916e-24
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = 3 
Query:  321 LDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAP 518
            L D+VN+ R+ S+WP +FGL+CC VEM  +  A +D+ RFG  + R SPRQ+D MVVAGT   KMAP
Sbjct:   46 LHDMVNWGRKNSLWPYNFGLSCCYVEMATSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAP 112

HSP 2 Score: 56.9954 bits (136), Expect = 4.916e-24
Identity = 26/66 (39.39%), Postives = 39/66 (59.09%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQK 720
            ++++YDQM  P+WVI                 VV+G D+ +PVD+Y+PGCPP  EA +  +L LQ+
Sbjct:  114 IQRLYDQMLEPKWVISMGACANSGGMYDIYS-VVQGVDKFIPVDVYIPGCPPRPEAYMQALLLLQE 178
The following BLAST results are available for this feature:
BLAST of FC910031 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDHK_CYCTA2.892e-2442.25NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_CRYJA2.899e-2444.74NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_PEA2.902e-2445.45NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NUOB_PROMH2.903e-2456.72NADH-quinone oxidoreductase subunit B OS=Proteus m... [more]
NDHK_ANGEV3.768e-2442.25NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NUOB_ENT383.777e-2455.22NADH-quinone oxidoreductase subunit B OS=Enterobac... [more]
NDHK_SOLTU4.916e-2443.66NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_SOLLC4.916e-2443.66NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_SOLBU4.916e-2443.66NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NUOB_PHOLL4.916e-2455.22NADH-quinone oxidoreductase subunit B OS=Photorhab... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA60BG09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60BG09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910031 ID=FC910031; Name=FC910031; organism=Citrus clementina; type=EST; length=724bp
CCATTTCTCTCTCCCTTGCCCCCGTGTGAGAAAACTAAACCAAACCCCAC
CCCCCCCCCCCACCCCACAACCCCCAAAACACAAGCCCAAAAAAAAAAAA
AAAAACTATGGCGGTACTCCCCAAAAACACTGCCCCGCCCCCCCCTCTCC
TCCTCTCCCAACGCCCCCCCTGTCTCCCCACGACCGTCCCCTCTCTCTCC
TCGGCCTCCGGCTCCTCCTCCTCCTCCTCCTCGCAGCCCACCTCCCACGC
TCGCCCTCCACCGCCCTCGACCACAAGTCCAGGCGGTATCTCAAAGACGG
CGGAATTCGTGATCTCTAAATTGGATGATGTCGTCAACTATATTCGTCGC
GGCTCCATCTGGCCCATGTCCTTCGGGCTGGCCTGCTGCGCCGTCGAGAT
GATGCACACCGGTGCTGCTCGTTACGATTTAGATCGATTCGGTATCATTT
TCAGGCCCAGCCCTCGCCAATCCGATGTCATGGTCGTAGCTGGCACACTC
ACAAACAAGATGGCCCCTGCCCCTTCGCAAGGTTTATGATCAAATGCCAA
ATCCTAGGTGGGTCATTTCTATGGGAAGCGGTGCAAATGGTGGTGGATAT
TATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGGATTGTCCCCGT
GGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGCCCCACTCTATG
GAATTCTCCAACTGCAGAAAAAGA
back to top