FC910031

Overview
NameFC910031
Unique NameFC910031
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC910031_ssr212 microsatellite FC910031_ssr212:212..232. BLAST: Citrus ESTs to Populus V2 proteins
Ccv1_Contig11434 contig Ccv1_Contig11434:58..782. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_BURPP (NADH-quinone oxidoreductase subunit B OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=nuoB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.744e-48
Identity = 55/72 (76.39%), Postives = 64/72 (88.89%), Query Frame = 3 
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPA
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPA 82

HSP 2 Score: 89.3521 bits (220), Expect = 1.744e-48
Identity = 42/67 (62.69%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQM  PRWVI                 VVRGCDRIVPVD+YVPGCPPTAEA +YG++QLQ K
Sbjct:   83 LRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAK 149
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_BURP8 (NADH-quinone oxidoreductase subunit B OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=nuoB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.744e-48
Identity = 55/72 (76.39%), Postives = 64/72 (88.89%), Query Frame = 3 
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPA
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPA 82

HSP 2 Score: 89.3521 bits (220), Expect = 1.744e-48
Identity = 42/67 (62.69%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQM  PRWVI                 VVRGCDRIVPVD+YVPGCPPTAEA +YG++QLQ K
Sbjct:   83 LRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAK 149
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_THICR (NADH-quinone oxidoreductase subunit B OS=Thiomicrospira crunogena (strain XCL-2) GN=nuoB PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.744e-48
Identity = 55/71 (77.46%), Postives = 63/71 (88.73%), Query Frame = 3 
Query:  309 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            V +  D ++N+ R GS+WPM+FGLACCAVEMMH GA+RYDLDRFGIIFRPSPRQSDVM+VAGTL NKMAPA
Sbjct:   12 VTTSADKLINWARTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIIFRPSPRQSDVMIVAGTLVNKMAPA 82

HSP 2 Score: 91.2781 bits (225), Expect = 1.744e-48
Identity = 44/67 (65.67%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQM  PRWVI                 VVRGCDRIVPVD+YVPGCPPTAEA LYGI+QLQ K
Sbjct:   83 LRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIIQLQNK 149
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_XANOR (NADH-quinone oxidoreductase subunit B OS=Xanthomonas oryzae pv. oryzae GN=nuoB PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 2.266e-48
Identity = 51/72 (70.83%), Postives = 64/72 (88.89%), Query Frame = 3 
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            +V + +D ++N+ R GS+WPM+FGLACCAVEMMH GA+R DLDR+G++FRPSPRQSDVM+VAGTL NKMAPA
Sbjct:   37 YVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGASRLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPA 108

HSP 2 Score: 95.5153 bits (236), Expect = 2.266e-48
Identity = 46/67 (68.66%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQMP+P+WVI                 VVRGCDRIVPVDIYVPGCPPTAEA +YGILQLQKK
Sbjct:  109 LRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKK 175
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_XANOP (NADH-quinone oxidoreductase subunit B OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=nuoB PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.266e-48
Identity = 51/72 (70.83%), Postives = 64/72 (88.89%), Query Frame = 3 
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            +V + +D ++N+ R GS+WPM+FGLACCAVEMMH GA+R DLDR+G++FRPSPRQSDVM+VAGTL NKMAPA
Sbjct:   35 YVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGASRLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPA 106

HSP 2 Score: 95.5153 bits (236), Expect = 2.266e-48
Identity = 46/67 (68.66%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQMP+P+WVI                 VVRGCDRIVPVDIYVPGCPPTAEA +YGILQLQKK
Sbjct:  107 LRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKK 173
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_XANOM (NADH-quinone oxidoreductase subunit B OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=nuoB PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 2.266e-48
Identity = 51/72 (70.83%), Postives = 64/72 (88.89%), Query Frame = 3 
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            +V + +D ++N+ R GS+WPM+FGLACCAVEMMH GA+R DLDR+G++FRPSPRQSDVM+VAGTL NKMAPA
Sbjct:   37 YVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGASRLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPA 108

HSP 2 Score: 95.5153 bits (236), Expect = 2.266e-48
Identity = 46/67 (68.66%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQMP+P+WVI                 VVRGCDRIVPVDIYVPGCPPTAEA +YGILQLQKK
Sbjct:  109 LRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKK 175
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_XANC5 (NADH-quinone oxidoreductase subunit B OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=nuoB PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.266e-48
Identity = 51/72 (70.83%), Postives = 64/72 (88.89%), Query Frame = 3 
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            +V + +D ++N+ R GS+WPM+FGLACCAVEMMH GA+R DLDR+G++FRPSPRQSDVM+VAGTL NKMAPA
Sbjct:   37 YVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGASRLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPA 108

HSP 2 Score: 95.5153 bits (236), Expect = 2.266e-48
Identity = 46/67 (68.66%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQMP+P+WVI                 VVRGCDRIVPVDIYVPGCPPTAEA +YGILQLQKK
Sbjct:  109 LRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKK 175
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_XANAC (NADH-quinone oxidoreductase subunit B OS=Xanthomonas axonopodis pv. citri GN=nuoB PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 2.266e-48
Identity = 51/72 (70.83%), Postives = 64/72 (88.89%), Query Frame = 3 
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            +V + +D ++N+ R GS+WPM+FGLACCAVEMMH GA+R DLDR+G++FRPSPRQSDVM+VAGTL NKMAPA
Sbjct:   37 YVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGASRLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPA 108

HSP 2 Score: 95.5153 bits (236), Expect = 2.266e-48
Identity = 46/67 (68.66%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQMP+P+WVI                 VVRGCDRIVPVDIYVPGCPPTAEA +YGILQLQKK
Sbjct:  109 LRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKK 175
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_RALSO (NADH-quinone oxidoreductase subunit B OS=Ralstonia solanacearum GN=nuoB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.274e-48
Identity = 54/72 (75.00%), Postives = 64/72 (88.89%), Query Frame = 3 
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GA+RYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPA
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPA 82

HSP 2 Score: 90.1225 bits (222), Expect = 2.274e-48
Identity = 43/67 (64.18%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQM  PRWVI                 VVRGCDRIVPVD+YVPGCPPTAEA +YGI+QLQ K
Sbjct:   83 LRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGIIQLQAK 149
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_RALPJ (NADH-quinone oxidoreductase subunit B OS=Ralstonia pickettii (strain 12J) GN=nuoB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.274e-48
Identity = 54/72 (75.00%), Postives = 64/72 (88.89%), Query Frame = 3 
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GA+RYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPA
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPA 82

HSP 2 Score: 90.1225 bits (222), Expect = 2.274e-48
Identity = 43/67 (64.18%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQM  PRWVI                 VVRGCDRIVPVD+YVPGCPPTAEA +YGI+QLQ K
Sbjct:   83 LRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGIIQLQAK 149
The following BLAST results are available for this feature:
BLAST of FC910031 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB_BURPP1.744e-4876.39NADH-quinone oxidoreductase subunit B OS=Burkholde... [more]
NUOB_BURP81.744e-4876.39NADH-quinone oxidoreductase subunit B OS=Burkholde... [more]
NUOB_THICR1.744e-4877.46NADH-quinone oxidoreductase subunit B OS=Thiomicro... [more]
NUOB_XANOR2.266e-4870.83NADH-quinone oxidoreductase subunit B OS=Xanthomon... [more]
NUOB_XANOP2.266e-4870.83NADH-quinone oxidoreductase subunit B OS=Xanthomon... [more]
NUOB_XANOM2.266e-4870.83NADH-quinone oxidoreductase subunit B OS=Xanthomon... [more]
NUOB_XANC52.266e-4870.83NADH-quinone oxidoreductase subunit B OS=Xanthomon... [more]
NUOB_XANAC2.266e-4870.83NADH-quinone oxidoreductase subunit B OS=Xanthomon... [more]
NUOB_RALSO2.274e-4875.00NADH-quinone oxidoreductase subunit B OS=Ralstonia... [more]
NUOB_RALPJ2.274e-4875.00NADH-quinone oxidoreductase subunit B OS=Ralstonia... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA60BG09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60BG09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910031 ID=FC910031; Name=FC910031; organism=Citrus clementina; type=EST; length=724bp
CCATTTCTCTCTCCCTTGCCCCCGTGTGAGAAAACTAAACCAAACCCCAC
CCCCCCCCCCCACCCCACAACCCCCAAAACACAAGCCCAAAAAAAAAAAA
AAAAACTATGGCGGTACTCCCCAAAAACACTGCCCCGCCCCCCCCTCTCC
TCCTCTCCCAACGCCCCCCCTGTCTCCCCACGACCGTCCCCTCTCTCTCC
TCGGCCTCCGGCTCCTCCTCCTCCTCCTCCTCGCAGCCCACCTCCCACGC
TCGCCCTCCACCGCCCTCGACCACAAGTCCAGGCGGTATCTCAAAGACGG
CGGAATTCGTGATCTCTAAATTGGATGATGTCGTCAACTATATTCGTCGC
GGCTCCATCTGGCCCATGTCCTTCGGGCTGGCCTGCTGCGCCGTCGAGAT
GATGCACACCGGTGCTGCTCGTTACGATTTAGATCGATTCGGTATCATTT
TCAGGCCCAGCCCTCGCCAATCCGATGTCATGGTCGTAGCTGGCACACTC
ACAAACAAGATGGCCCCTGCCCCTTCGCAAGGTTTATGATCAAATGCCAA
ATCCTAGGTGGGTCATTTCTATGGGAAGCGGTGCAAATGGTGGTGGATAT
TATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGGATTGTCCCCGT
GGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGCCCCACTCTATG
GAATTCTCCAACTGCAGAAAAAGA
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