FC910031

Overview
NameFC910031
Unique NameFC910031
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_LARHH (NADH-quinone oxidoreductase subunit B OS=Laribacter hongkongensis (strain HLHK9) GN=nuoB PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.274e-48
Identity = 54/72 (75.00%), Postives = 64/72 (88.89%), Query Frame = 3 
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            F+ +  D V+N+ R GS+WPM+FGLACCAVEMMH GA+RYDLDRFGI+FRPSPRQSD+M+VAGTL NKMAPA
Sbjct:   11 FITTSADKVLNWTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIVFRPSPRQSDLMIVAGTLCNKMAPA 82

HSP 2 Score: 90.5077 bits (223), Expect = 2.274e-48
Identity = 43/67 (64.18%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQM  PRWV+                 VVRGCDRIVPVD+YVPGCPPTAEA LYGI+QLQ K
Sbjct:   83 LRKVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIIQLQNK 149
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_HERAR (NADH-quinone oxidoreductase subunit B OS=Herminiimonas arsenicoxydans GN=nuoB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.274e-48
Identity = 53/72 (73.61%), Postives = 64/72 (88.89%), Query Frame = 3 
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GA+RYD+DRFG++FRPSPRQSDVM+VAGTL NKMAPA
Sbjct:   11 FVTTTADKLINWTRTGSMWPMTFGLACCAVEMMHAGASRYDMDRFGVVFRPSPRQSDVMIVAGTLCNKMAPA 82

HSP 2 Score: 91.2781 bits (225), Expect = 2.274e-48
Identity = 44/67 (65.67%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQM  PRWVI                 VVRGCDRIVPVD+YVPGCPPTAEA LYGI+QLQ K
Sbjct:   83 LRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIMQLQNK 149
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB1_AZOSB (NADH-quinone oxidoreductase subunit B 1 OS=Azoarcus sp. (strain BH72) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.274e-48
Identity = 53/72 (73.61%), Postives = 64/72 (88.89%), Query Frame = 3 
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            FV + LD V+N+ R GS+WPM+FGLACCAVEM+H G +RYDLDRFG++FRPSPRQSD+M+VAGTL NKMAPA
Sbjct:   11 FVTTSLDAVINWTRTGSLWPMTFGLACCAVEMIHAGCSRYDLDRFGVVFRPSPRQSDLMIVAGTLCNKMAPA 82

HSP 2 Score: 91.2781 bits (225), Expect = 2.274e-48
Identity = 44/67 (65.67%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQM  PRWVI                 VVRGCDRIVPVD+YVPGCPPTAEA LYGI+QLQ K
Sbjct:   83 LRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIIQLQNK 149
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_BURVG (NADH-quinone oxidoreductase subunit B OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=nuoB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.862e-48
Identity = 55/72 (76.39%), Postives = 64/72 (88.89%), Query Frame = 3 
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPA
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPA 82

HSP 2 Score: 88.1965 bits (217), Expect = 3.862e-48
Identity = 41/67 (61.19%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LR+VYDQM  PRWVI                 VVRGCDRIVPVD+YVPGCPPTAEA +YG++QLQ K
Sbjct:   83 LRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAK 149
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_BURTA (NADH-quinone oxidoreductase subunit B OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=nuoB PE=3 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 3.862e-48
Identity = 55/72 (76.39%), Postives = 64/72 (88.89%), Query Frame = 3 
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPA
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPA 82

HSP 2 Score: 88.1965 bits (217), Expect = 3.862e-48
Identity = 41/67 (61.19%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LR+VYDQM  PRWVI                 VVRGCDRIVPVD+YVPGCPPTAEA +YG++QLQ K
Sbjct:   83 LRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAK 149
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_BURS3 (NADH-quinone oxidoreductase subunit B OS=Burkholderia sp. (strain 383) GN=nuoB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.862e-48
Identity = 55/72 (76.39%), Postives = 64/72 (88.89%), Query Frame = 3 
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPA
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPA 82

HSP 2 Score: 88.1965 bits (217), Expect = 3.862e-48
Identity = 41/67 (61.19%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LR+VYDQM  PRWVI                 VVRGCDRIVPVD+YVPGCPPTAEA +YG++QLQ K
Sbjct:   83 LRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAK 149
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_BURM1 (NADH-quinone oxidoreductase subunit B OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=nuoB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.862e-48
Identity = 55/72 (76.39%), Postives = 64/72 (88.89%), Query Frame = 3 
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPA
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPA 82

HSP 2 Score: 88.1965 bits (217), Expect = 3.862e-48
Identity = 41/67 (61.19%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LR+VYDQM  PRWVI                 VVRGCDRIVPVD+YVPGCPPTAEA +YG++QLQ K
Sbjct:   83 LRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAK 149
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_BURCM (NADH-quinone oxidoreductase subunit B OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=nuoB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.862e-48
Identity = 55/72 (76.39%), Postives = 64/72 (88.89%), Query Frame = 3 
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPA
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPA 82

HSP 2 Score: 88.1965 bits (217), Expect = 3.862e-48
Identity = 41/67 (61.19%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LR+VYDQM  PRWVI                 VVRGCDRIVPVD+YVPGCPPTAEA +YG++QLQ K
Sbjct:   83 LRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAK 149
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_BURCJ (NADH-quinone oxidoreductase subunit B OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=nuoB PE=3 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 3.862e-48
Identity = 55/72 (76.39%), Postives = 64/72 (88.89%), Query Frame = 3 
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPA
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPA 82

HSP 2 Score: 88.1965 bits (217), Expect = 3.862e-48
Identity = 41/67 (61.19%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LR+VYDQM  PRWVI                 VVRGCDRIVPVD+YVPGCPPTAEA +YG++QLQ K
Sbjct:   83 LRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAK 149
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_BURCH (NADH-quinone oxidoreductase subunit B OS=Burkholderia cenocepacia (strain HI2424) GN=nuoB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.862e-48
Identity = 55/72 (76.39%), Postives = 64/72 (88.89%), Query Frame = 3 
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPA
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPA 82

HSP 2 Score: 88.1965 bits (217), Expect = 3.862e-48
Identity = 41/67 (61.19%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LR+VYDQM  PRWVI                 VVRGCDRIVPVD+YVPGCPPTAEA +YG++QLQ K
Sbjct:   83 LRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAK 149
The following BLAST results are available for this feature:
BLAST of FC910031 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB_LARHH2.274e-4875.00NADH-quinone oxidoreductase subunit B OS=Laribacte... [more]
NUOB_HERAR2.274e-4873.61NADH-quinone oxidoreductase subunit B OS=Herminiim... [more]
NUOB1_AZOSB2.274e-4873.61NADH-quinone oxidoreductase subunit B 1 OS=Azoarcu... [more]
NUOB_BURVG3.862e-4876.39NADH-quinone oxidoreductase subunit B OS=Burkholde... [more]
NUOB_BURTA3.862e-4876.39NADH-quinone oxidoreductase subunit B OS=Burkholde... [more]
NUOB_BURS33.862e-4876.39NADH-quinone oxidoreductase subunit B OS=Burkholde... [more]
NUOB_BURM13.862e-4876.39NADH-quinone oxidoreductase subunit B OS=Burkholde... [more]
NUOB_BURCM3.862e-4876.39NADH-quinone oxidoreductase subunit B OS=Burkholde... [more]
NUOB_BURCJ3.862e-4876.39NADH-quinone oxidoreductase subunit B OS=Burkholde... [more]
NUOB_BURCH3.862e-4876.39NADH-quinone oxidoreductase subunit B OS=Burkholde... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA60BG09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60BG09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910031 ID=FC910031; Name=FC910031; organism=Citrus clementina; type=EST; length=724bp
CCATTTCTCTCTCCCTTGCCCCCGTGTGAGAAAACTAAACCAAACCCCAC
CCCCCCCCCCCACCCCACAACCCCCAAAACACAAGCCCAAAAAAAAAAAA
AAAAACTATGGCGGTACTCCCCAAAAACACTGCCCCGCCCCCCCCTCTCC
TCCTCTCCCAACGCCCCCCCTGTCTCCCCACGACCGTCCCCTCTCTCTCC
TCGGCCTCCGGCTCCTCCTCCTCCTCCTCCTCGCAGCCCACCTCCCACGC
TCGCCCTCCACCGCCCTCGACCACAAGTCCAGGCGGTATCTCAAAGACGG
CGGAATTCGTGATCTCTAAATTGGATGATGTCGTCAACTATATTCGTCGC
GGCTCCATCTGGCCCATGTCCTTCGGGCTGGCCTGCTGCGCCGTCGAGAT
GATGCACACCGGTGCTGCTCGTTACGATTTAGATCGATTCGGTATCATTT
TCAGGCCCAGCCCTCGCCAATCCGATGTCATGGTCGTAGCTGGCACACTC
ACAAACAAGATGGCCCCTGCCCCTTCGCAAGGTTTATGATCAAATGCCAA
ATCCTAGGTGGGTCATTTCTATGGGAAGCGGTGCAAATGGTGGTGGATAT
TATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGGATTGTCCCCGT
GGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGCCCCACTCTATG
GAATTCTCCAACTGCAGAAAAAGA
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