FC910031 | Citrus Genome Database

Overview


Name	FC910031
Unique Name	FC910031
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	724

Libraries


Library Name	Type
IVIA1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
FC910031_ssr212	microsatellite	FC910031_ssr212:212..232.	BLAST: Citrus ESTs to Populus V2 proteins
Ccv1_Contig11434	contig	Ccv1_Contig11434:58..782.	BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins

Homology

BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_BURCC (NADH-quinone oxidoreductase subunit B OS=Burkholderia cenocepacia (strain MC0-3) GN=nuoB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.862e-48
Identity = 55/72 (76.39%), Postives = 64/72 (88.89%), Query Frame = 3

Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPA
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPA 82

HSP 2 Score: 88.1965 bits (217), Expect = 3.862e-48
Identity = 41/67 (61.19%), Postives = 46/67 (68.66%), Query Frame = 1

Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LR+VYDQM  PRWVI                 VVRGCDRIVPVD+YVPGCPPTAEA +YG++QLQ K
Sbjct:   83 LRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAK 149

BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_BURCA (NADH-quinone oxidoreductase subunit B OS=Burkholderia cenocepacia (strain AU 1054) GN=nuoB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.862e-48
Identity = 55/72 (76.39%), Postives = 64/72 (88.89%), Query Frame = 3

Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPA
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPA 82

HSP 2 Score: 88.1965 bits (217), Expect = 3.862e-48
Identity = 41/67 (61.19%), Postives = 46/67 (68.66%), Query Frame = 1

Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LR+VYDQM  PRWVI                 VVRGCDRIVPVD+YVPGCPPTAEA +YG++QLQ K
Sbjct:   83 LRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAK 149

BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_BURA4 (NADH-quinone oxidoreductase subunit B OS=Burkholderia ambifaria (strain MC40-6) GN=nuoB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.862e-48
Identity = 55/72 (76.39%), Postives = 64/72 (88.89%), Query Frame = 3

Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPA
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPA 82

HSP 2 Score: 88.1965 bits (217), Expect = 3.862e-48
Identity = 41/67 (61.19%), Postives = 46/67 (68.66%), Query Frame = 1

Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LR+VYDQM  PRWVI                 VVRGCDRIVPVD+YVPGCPPTAEA +YG++QLQ K
Sbjct:   83 LRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAK 149

BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB1_BURPS (NADH-quinone oxidoreductase subunit B 1 OS=Burkholderia pseudomallei GN=nuoB1 PE=3 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 3.862e-48
Identity = 55/72 (76.39%), Postives = 64/72 (88.89%), Query Frame = 3

Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPA
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPA 82

HSP 2 Score: 88.1965 bits (217), Expect = 3.862e-48
Identity = 41/67 (61.19%), Postives = 46/67 (68.66%), Query Frame = 1

Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LR+VYDQM  PRWVI                 VVRGCDRIVPVD+YVPGCPPTAEA +YG++QLQ K
Sbjct:   83 LRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAK 149

BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB1_BURP6 (NADH-quinone oxidoreductase subunit B 1 OS=Burkholderia pseudomallei (strain 668) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.862e-48
Identity = 55/72 (76.39%), Postives = 64/72 (88.89%), Query Frame = 3

Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPA
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPA 82

HSP 2 Score: 88.1965 bits (217), Expect = 3.862e-48
Identity = 41/67 (61.19%), Postives = 46/67 (68.66%), Query Frame = 1

Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LR+VYDQM  PRWVI                 VVRGCDRIVPVD+YVPGCPPTAEA +YG++QLQ K
Sbjct:   83 LRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAK 149

BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB1_BURP1 (NADH-quinone oxidoreductase subunit B 1 OS=Burkholderia pseudomallei (strain 1710b) GN=nuoB1 PE=3 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 3.862e-48
Identity = 55/72 (76.39%), Postives = 64/72 (88.89%), Query Frame = 3

Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPA
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPA 82

HSP 2 Score: 88.1965 bits (217), Expect = 3.862e-48
Identity = 41/67 (61.19%), Postives = 46/67 (68.66%), Query Frame = 1

Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LR+VYDQM  PRWVI                 VVRGCDRIVPVD+YVPGCPPTAEA +YG++QLQ K
Sbjct:   83 LRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAK 149

BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB1_BURP0 (NADH-quinone oxidoreductase subunit B 1 OS=Burkholderia pseudomallei (strain 1106a) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.862e-48
Identity = 55/72 (76.39%), Postives = 64/72 (88.89%), Query Frame = 3

Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPA
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPA 82

HSP 2 Score: 88.1965 bits (217), Expect = 3.862e-48
Identity = 41/67 (61.19%), Postives = 46/67 (68.66%), Query Frame = 1

Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LR+VYDQM  PRWVI                 VVRGCDRIVPVD+YVPGCPPTAEA +YG++QLQ K
Sbjct:   83 LRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAK 149

BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB1_BURMS (NADH-quinone oxidoreductase subunit B 1 OS=Burkholderia mallei (strain SAVP1) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.862e-48
Identity = 55/72 (76.39%), Postives = 64/72 (88.89%), Query Frame = 3

Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPA
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPA 82

HSP 2 Score: 88.1965 bits (217), Expect = 3.862e-48
Identity = 41/67 (61.19%), Postives = 46/67 (68.66%), Query Frame = 1

Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LR+VYDQM  PRWVI                 VVRGCDRIVPVD+YVPGCPPTAEA +YG++QLQ K
Sbjct:   83 LRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAK 149

BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB1_BURMA (NADH-quinone oxidoreductase subunit B 1 OS=Burkholderia mallei GN=nuoB1 PE=3 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 3.862e-48
Identity = 55/72 (76.39%), Postives = 64/72 (88.89%), Query Frame = 3

Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPA
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPA 82

HSP 2 Score: 88.1965 bits (217), Expect = 3.862e-48
Identity = 41/67 (61.19%), Postives = 46/67 (68.66%), Query Frame = 1

Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LR+VYDQM  PRWVI                 VVRGCDRIVPVD+YVPGCPPTAEA +YG++QLQ K
Sbjct:   83 LRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAK 149

BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB1_BURM9 (NADH-quinone oxidoreductase subunit B 1 OS=Burkholderia mallei (strain NCTC 10229) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.862e-48
Identity = 55/72 (76.39%), Postives = 64/72 (88.89%), Query Frame = 3

Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPA
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPA 82

HSP 2 Score: 88.1965 bits (217), Expect = 3.862e-48
Identity = 41/67 (61.19%), Postives = 46/67 (68.66%), Query Frame = 1

Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LR+VYDQM  PRWVI                 VVRGCDRIVPVD+YVPGCPPTAEA +YG++QLQ K
Sbjct:   83 LRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAK 149

The following BLAST results are available for this feature:

BLAST of FC910031 vs. ExPASy Swiss-Prot

BLAST of FC910031 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
NUOB_BURCC	3.862e-48	76.39	NADH-quinone oxidoreductase subunit B OS=Burkholde...	[more]
NUOB_BURCA	3.862e-48	76.39	NADH-quinone oxidoreductase subunit B OS=Burkholde...	[more]
NUOB_BURA4	3.862e-48	76.39	NADH-quinone oxidoreductase subunit B OS=Burkholde...	[more]
NUOB1_BURPS	3.862e-48	76.39	NADH-quinone oxidoreductase subunit B 1 OS=Burkhol...	[more]
NUOB1_BURP6	3.862e-48	76.39	NADH-quinone oxidoreductase subunit B 1 OS=Burkhol...	[more]
NUOB1_BURP1	3.862e-48	76.39	NADH-quinone oxidoreductase subunit B 1 OS=Burkhol...	[more]
NUOB1_BURP0	3.862e-48	76.39	NADH-quinone oxidoreductase subunit B 1 OS=Burkhol...	[more]
NUOB1_BURMS	3.862e-48	76.39	NADH-quinone oxidoreductase subunit B 1 OS=Burkhol...	[more]
NUOB1_BURMA	3.862e-48	76.39	NADH-quinone oxidoreductase subunit B 1 OS=Burkhol...	[more]
NUOB1_BURM9	3.862e-48	76.39	NADH-quinone oxidoreductase subunit B 1 OS=Burkhol...	[more]

Pages

Properties


Property Name	Value
Genbank description	IC0AAA60BG09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60BG09, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC910031 ID=FC910031; Name=FC910031; organism=Citrus clementina; type=EST; length=724bp
CCATTTCTCTCTCCCTTGCCCCCGTGTGAGAAAACTAAACCAAACCCCAC
CCCCCCCCCCCACCCCACAACCCCCAAAACACAAGCCCAAAAAAAAAAAA
AAAAACTATGGCGGTACTCCCCAAAAACACTGCCCCGCCCCCCCCTCTCC
TCCTCTCCCAACGCCCCCCCTGTCTCCCCACGACCGTCCCCTCTCTCTCC
TCGGCCTCCGGCTCCTCCTCCTCCTCCTCCTCGCAGCCCACCTCCCACGC
TCGCCCTCCACCGCCCTCGACCACAAGTCCAGGCGGTATCTCAAAGACGG
CGGAATTCGTGATCTCTAAATTGGATGATGTCGTCAACTATATTCGTCGC
GGCTCCATCTGGCCCATGTCCTTCGGGCTGGCCTGCTGCGCCGTCGAGAT
GATGCACACCGGTGCTGCTCGTTACGATTTAGATCGATTCGGTATCATTT
TCAGGCCCAGCCCTCGCCAATCCGATGTCATGGTCGTAGCTGGCACACTC
ACAAACAAGATGGCCCCTGCCCCTTCGCAAGGTTTATGATCAAATGCCAA
ATCCTAGGTGGGTCATTTCTATGGGAAGCGGTGCAAATGGTGGTGGATAT
TATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGGATTGTCCCCGT
GGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGCCCCACTCTATG
GAATTCTCCAACTGCAGAAAAAGA