FC910031

Overview
NameFC910031
Unique NameFC910031
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB1_BURM7 (NADH-quinone oxidoreductase subunit B 1 OS=Burkholderia mallei (strain NCTC 10247) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.862e-48
Identity = 55/72 (76.39%), Postives = 64/72 (88.89%), Query Frame = 3 
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPA
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPA 82

HSP 2 Score: 88.1965 bits (217), Expect = 3.862e-48
Identity = 41/67 (61.19%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LR+VYDQM  PRWVI                 VVRGCDRIVPVD+YVPGCPPTAEA +YG++QLQ K
Sbjct:   83 LRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAK 149
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_POLNA (NADH-quinone oxidoreductase subunit B OS=Polaromonas naphthalenivorans (strain CJ2) GN=nuoB PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.862e-48
Identity = 53/72 (73.61%), Postives = 63/72 (87.50%), Query Frame = 3 
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            FV +  D VVN+ + GS+WPM+FGLACCAVEMMH GAARYD+DRFG++FRPSPRQSD+M+VAGTL NKM PA
Sbjct:   11 FVTTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAGAARYDIDRFGMLFRPSPRQSDLMIVAGTLCNKMGPA 82

HSP 2 Score: 91.6633 bits (226), Expect = 3.862e-48
Identity = 44/67 (65.67%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQM  PRWVI                 VVRGCDRIVPVD+YVPGCPPTAEA LYGI+QLQ+K
Sbjct:   83 LRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIIQLQQK 149
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB2_NITOC (NADH-quinone oxidoreductase subunit B 2 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=nuoB2 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.862e-48
Identity = 53/71 (74.65%), Postives = 63/71 (88.73%), Query Frame = 3 
Query:  309 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            V +  D ++N+ R GS+WPM+FGLACCAVEMMH GA+RYD+DRFG+IFRPSPRQSDVM+VAGTL NKMAPA
Sbjct:   12 VTTTADKLINWARTGSLWPMTFGLACCAVEMMHAGASRYDMDRFGVIFRPSPRQSDVMIVAGTLVNKMAPA 82

HSP 2 Score: 91.6633 bits (226), Expect = 3.862e-48
Identity = 45/67 (67.16%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQM  PRWVI                 VVRGCDRIVPVDIYVPGCPPTAEA LYGI+QLQ K
Sbjct:   83 LRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIIQLQNK 149
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_FRATW (NADH-quinone oxidoreductase subunit B OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=nuoB PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.561e-48
Identity = 53/75 (70.67%), Postives = 65/75 (86.67%), Query Frame = 3 
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPAPSQ 530
            F+ +  D ++N++R GS+WP++ GLACCAVEMMH GAARYDLDRFGI+FRPSPRQSDV++VAGTL NKMAPA  Q
Sbjct:   10 FITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSDVLIVAGTLCNKMAPALRQ 84

HSP 2 Score: 91.2781 bits (225), Expect = 6.561e-48
Identity = 43/67 (64.18%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LR+VYDQMP+P+WVI                 VVRGCDRIVPVDIYVPGCPPTAEA +YGI+QLQ K
Sbjct:   82 LRQVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGIIQLQNK 148
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_FRATT (NADH-quinone oxidoreductase subunit B OS=Francisella tularensis subsp. tularensis GN=nuoB PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.561e-48
Identity = 53/75 (70.67%), Postives = 65/75 (86.67%), Query Frame = 3 
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPAPSQ 530
            F+ +  D ++N++R GS+WP++ GLACCAVEMMH GAARYDLDRFGI+FRPSPRQSDV++VAGTL NKMAPA  Q
Sbjct:   10 FITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSDVLIVAGTLCNKMAPALRQ 84

HSP 2 Score: 91.2781 bits (225), Expect = 6.561e-48
Identity = 43/67 (64.18%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LR+VYDQMP+P+WVI                 VVRGCDRIVPVDIYVPGCPPTAEA +YGI+QLQ K
Sbjct:   82 LRQVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGIIQLQNK 148
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_FRATO (NADH-quinone oxidoreductase subunit B OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=nuoB PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.561e-48
Identity = 53/75 (70.67%), Postives = 65/75 (86.67%), Query Frame = 3 
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPAPSQ 530
            F+ +  D ++N++R GS+WP++ GLACCAVEMMH GAARYDLDRFGI+FRPSPRQSDV++VAGTL NKMAPA  Q
Sbjct:   10 FITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSDVLIVAGTLCNKMAPALRQ 84

HSP 2 Score: 91.2781 bits (225), Expect = 6.561e-48
Identity = 43/67 (64.18%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LR+VYDQMP+P+WVI                 VVRGCDRIVPVDIYVPGCPPTAEA +YGI+QLQ K
Sbjct:   82 LRQVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGIIQLQNK 148
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_FRATN (NADH-quinone oxidoreductase subunit B OS=Francisella tularensis subsp. novicida (strain U112) GN=nuoB PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.561e-48
Identity = 53/75 (70.67%), Postives = 65/75 (86.67%), Query Frame = 3 
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPAPSQ 530
            F+ +  D ++N++R GS+WP++ GLACCAVEMMH GAARYDLDRFGI+FRPSPRQSDV++VAGTL NKMAPA  Q
Sbjct:   10 FITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSDVLIVAGTLCNKMAPALRQ 84

HSP 2 Score: 91.2781 bits (225), Expect = 6.561e-48
Identity = 43/67 (64.18%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LR+VYDQMP+P+WVI                 VVRGCDRIVPVDIYVPGCPPTAEA +YGI+QLQ K
Sbjct:   82 LRQVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGIIQLQNK 148
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_FRATM (NADH-quinone oxidoreductase subunit B OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=nuoB PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.561e-48
Identity = 53/75 (70.67%), Postives = 65/75 (86.67%), Query Frame = 3 
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPAPSQ 530
            F+ +  D ++N++R GS+WP++ GLACCAVEMMH GAARYDLDRFGI+FRPSPRQSDV++VAGTL NKMAPA  Q
Sbjct:   10 FITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSDVLIVAGTLCNKMAPALRQ 84

HSP 2 Score: 91.2781 bits (225), Expect = 6.561e-48
Identity = 43/67 (64.18%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LR+VYDQMP+P+WVI                 VVRGCDRIVPVDIYVPGCPPTAEA +YGI+QLQ K
Sbjct:   82 LRQVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGIIQLQNK 148
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_FRATH (NADH-quinone oxidoreductase subunit B OS=Francisella tularensis subsp. holarctica (strain LVS) GN=nuoB PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.561e-48
Identity = 53/75 (70.67%), Postives = 65/75 (86.67%), Query Frame = 3 
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPAPSQ 530
            F+ +  D ++N++R GS+WP++ GLACCAVEMMH GAARYDLDRFGI+FRPSPRQSDV++VAGTL NKMAPA  Q
Sbjct:   10 FITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSDVLIVAGTLCNKMAPALRQ 84

HSP 2 Score: 91.2781 bits (225), Expect = 6.561e-48
Identity = 43/67 (64.18%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LR+VYDQMP+P+WVI                 VVRGCDRIVPVDIYVPGCPPTAEA +YGI+QLQ K
Sbjct:   82 LRQVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGIIQLQNK 148
[Close]
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_FRATF (NADH-quinone oxidoreductase subunit B OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=nuoB PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.561e-48
Identity = 53/75 (70.67%), Postives = 65/75 (86.67%), Query Frame = 3 
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPAPSQ 530
            F+ +  D ++N++R GS+WP++ GLACCAVEMMH GAARYDLDRFGI+FRPSPRQSDV++VAGTL NKMAPA  Q
Sbjct:   10 FITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSDVLIVAGTLCNKMAPALRQ 84

HSP 2 Score: 91.2781 bits (225), Expect = 6.561e-48
Identity = 43/67 (64.18%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LR+VYDQMP+P+WVI                 VVRGCDRIVPVDIYVPGCPPTAEA +YGI+QLQ K
Sbjct:   82 LRQVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGIIQLQNK 148
The following BLAST results are available for this feature:
BLAST of FC910031 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB1_BURM73.862e-4876.39NADH-quinone oxidoreductase subunit B 1 OS=Burkhol... [more]
NUOB_POLNA3.862e-4873.61NADH-quinone oxidoreductase subunit B OS=Polaromon... [more]
NUOB2_NITOC3.862e-4874.65NADH-quinone oxidoreductase subunit B 2 OS=Nitroso... [more]
NUOB_FRATW6.561e-4870.67NADH-quinone oxidoreductase subunit B OS=Francisel... [more]
NUOB_FRATT6.561e-4870.67NADH-quinone oxidoreductase subunit B OS=Francisel... [more]
NUOB_FRATO6.561e-4870.67NADH-quinone oxidoreductase subunit B OS=Francisel... [more]
NUOB_FRATN6.561e-4870.67NADH-quinone oxidoreductase subunit B OS=Francisel... [more]
NUOB_FRATM6.561e-4870.67NADH-quinone oxidoreductase subunit B OS=Francisel... [more]
NUOB_FRATH6.561e-4870.67NADH-quinone oxidoreductase subunit B OS=Francisel... [more]
NUOB_FRATF6.561e-4870.67NADH-quinone oxidoreductase subunit B OS=Francisel... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA60BG09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60BG09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910031 ID=FC910031; Name=FC910031; organism=Citrus clementina; type=EST; length=724bp
CCATTTCTCTCTCCCTTGCCCCCGTGTGAGAAAACTAAACCAAACCCCAC
CCCCCCCCCCCACCCCACAACCCCCAAAACACAAGCCCAAAAAAAAAAAA
AAAAACTATGGCGGTACTCCCCAAAAACACTGCCCCGCCCCCCCCTCTCC
TCCTCTCCCAACGCCCCCCCTGTCTCCCCACGACCGTCCCCTCTCTCTCC
TCGGCCTCCGGCTCCTCCTCCTCCTCCTCCTCGCAGCCCACCTCCCACGC
TCGCCCTCCACCGCCCTCGACCACAAGTCCAGGCGGTATCTCAAAGACGG
CGGAATTCGTGATCTCTAAATTGGATGATGTCGTCAACTATATTCGTCGC
GGCTCCATCTGGCCCATGTCCTTCGGGCTGGCCTGCTGCGCCGTCGAGAT
GATGCACACCGGTGCTGCTCGTTACGATTTAGATCGATTCGGTATCATTT
TCAGGCCCAGCCCTCGCCAATCCGATGTCATGGTCGTAGCTGGCACACTC
ACAAACAAGATGGCCCCTGCCCCTTCGCAAGGTTTATGATCAAATGCCAA
ATCCTAGGTGGGTCATTTCTATGGGAAGCGGTGCAAATGGTGGTGGATAT
TATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGGATTGTCCCCGT
GGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGCCCCACTCTATG
GAATTCTCCAACTGCAGAAAAAGA
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