FC910032

Overview
NameFC910032
Unique NameFC910032
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length857
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFG1_TRIEI (Elongation factor G 1 OS=Trichodesmium erythraeum (strain IMS101) GN=fusA1 PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.084e-56
Identity = 112/188 (59.57%), Postives = 143/188 (76.06%), Query Frame = 3
Query:  279 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSHG 842
            +ER+RNIGI+AHID+GKTT TERILFY+G +H++ EV     V    D M  ERE+GITI +AA S  W D+QINIIDTPGHVDFT+EVER++RVLDG I V CSVGGVQSQS TV RQ  RY+VPR+AFINK+DR GA+ +KV +Q R +LR +   +Q+P+G E++F G+VDLV + A  ++   G
Sbjct:    7 IERVRNIGIAAHIDAGKTTTTERILFYSGIVHKMGEVHYGTAV---TDWMAQERERGITITAAAISTKWLDHQINIIDTPGHVDFTIEVERSMRVLDGIIAVFCSVGGVQSQSETVWRQADRYQVPRMAFINKMDRTGANFFKVYEQIRDRLRANAVPIQIPIGSENEFTGIVDLVAMKALIYNDDQG 191          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFG_DESAP (Elongation factor G OS=Desulforudis audaxviator (strain MP104C) GN=fusA PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.416e-56
Identity = 113/190 (59.47%), Postives = 141/190 (74.21%), Query Frame = 3
Query:  279 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSHGEK 848
            +ER RNIGI AHID+GKTT TERILFYTGR+H I EV   D   A MD M  E+E+GITI SAAT+C W+DY+INIIDTPGHVDFTVEVER+LRVLDGAI V  +V GV+ QS TV RQ  +Y VPR+ ++NK+DR+GAD +K +   ++KL     AVQ+P+G ED+F G++DLV   A+ +    G K
Sbjct:    7 LERTRNIGIMAHIDAGKTTTTERILFYTGRVHRIGEV---DDGAATMDWMVQEQERGITITSAATTCYWRDYRINIIDTPGHVDFTVEVERSLRVLDGAIAVFDAVAGVEPQSETVWRQADKYRVPRIVYLNKMDRVGADFFKSMQSIKTKLGSDPVAVQIPLGAEDRFVGMIDLVTRKAFIYTDDLGTK 193          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFG_NATTJ (Elongation factor G OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=fusA PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.849e-56
Identity = 112/191 (58.64%), Postives = 142/191 (74.35%), Query Frame = 3
Query:  270 KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSHG 842
            K  +E+ RNIGI AHID+GKTT TERILFYTGR+H++ E    DG    MD MD E+E+GITI SAAT+C W+D ++NIIDTPGHVDFTVEVER+LRVLDGAI V C+ GGV+ QS TV  Q  RY VPR+A+INK+D MGAD + V+D    +L+ +   +Q+P+G ED FQG+VDL++ TA  +    G
Sbjct:    4 KFPLEQTRNIGIMAHIDAGKTTTTERILFYTGRVHKLGETH--DGAST-MDFMDQEQERGITITSAATTCQWRDTRVNIIDTPGHVDFTVEVERSLRVLDGAIGVFCAKGGVEPQSETVWHQADRYHVPRIAYINKMDIMGADFYNVVDMMNERLQANPVPIQLPIGKEDDFQGIVDLIKNTAVIYKDDLG 191          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFG_HELPS (Elongation factor G OS=Helicobacter pylori (strain Shi470) GN=fusA PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.849e-56
Identity = 109/183 (59.56%), Postives = 143/183 (78.14%), Query Frame = 3
Query:  270 KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTA 818
            K  + R+RNIGI+AHID+GKTT +ERILFYTG  H+I EV   DG  A MD M+ E+E+GITI SAAT+C WKD+QIN+IDTPGHVDFT+EVER++RVLDGA+ V CSVGGVQ QS TV RQ  +Y VPR+ F+NK+DR+GA+ + V +Q + +L+ +   + +P+G ED F G++DLVQ+ A
Sbjct:    4 KTPLNRIRNIGIAAHIDAGKTTTSERILFYTGVSHKIGEVH--DGA-ATMDWMEQEKERGITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYSVENQIKQRLKANPVPINIPIGAEDTFIGVIDLVQMKA 183          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFG_HELPJ (Elongation factor G OS=Helicobacter pylori J99 GN=fusA PE=3 SV=3)

HSP 1 Score: 219.55 bits (558), Expect = 1.849e-56
Identity = 109/183 (59.56%), Postives = 143/183 (78.14%), Query Frame = 3
Query:  270 KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTA 818
            K  + R+RNIGI+AHID+GKTT +ERILFYTG  H+I EV   DG  A MD M+ E+E+GITI SAAT+C WKD+QIN+IDTPGHVDFT+EVER++RVLDGA+ V CSVGGVQ QS TV RQ  +Y VPR+ F+NK+DR+GA+ + V +Q + +L+ +   + +P+G ED F G++DLVQ+ A
Sbjct:    4 KTPLNRIRNIGIAAHIDAGKTTTSERILFYTGVSHKIGEVH--DGA-ATMDWMEQEKERGITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYNVENQIKQRLKANPVPINIPIGAEDTFIGVIDLVQMKA 183          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFG_HELP2 (Elongation factor G OS=Helicobacter pylori (strain P12) GN=fusA PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.849e-56
Identity = 109/183 (59.56%), Postives = 143/183 (78.14%), Query Frame = 3
Query:  270 KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTA 818
            K  + R+RNIGI+AHID+GKTT +ERILFYTG  H+I EV   DG  A MD M+ E+E+GITI SAAT+C WKD+QIN+IDTPGHVDFT+EVER++RVLDGA+ V CSVGGVQ QS TV RQ  +Y VPR+ F+NK+DR+GA+ + V +Q + +L+ +   + +P+G ED F G++DLVQ+ A
Sbjct:    4 KTPLNRIRNIGIAAHIDAGKTTTSERILFYTGVSHKIGEVH--DGA-ATMDWMEQEKERGITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYNVENQIKQRLKANPVPINIPIGAEDTFIGVIDLVQMKA 183          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFG_HELAH (Elongation factor G OS=Helicobacter acinonychis (strain Sheeba) GN=fusA PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.849e-56
Identity = 109/183 (59.56%), Postives = 143/183 (78.14%), Query Frame = 3
Query:  270 KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTA 818
            K  + R+RNIGI+AHID+GKTT +ERILFYTG  H+I EV   DG  A MD M+ E+E+GITI SAAT+C WKD+QIN+IDTPGHVDFT+EVER++RVLDGA+ V CSVGGVQ QS TV RQ  +Y VPR+ F+NK+DR+GA+ + V +Q + +L+ +   + +P+G ED F G++DLVQ+ A
Sbjct:    4 KTPLNRIRNIGIAAHIDAGKTTTSERILFYTGVSHKIGEVH--DGA-ATMDWMEQEKERGITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYNVENQIKQRLKANPVPINIPIGAEDTFIGVIDLVQMKA 183          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFG_CAMFF (Elongation factor G OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=fusA PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.849e-56
Identity = 105/183 (57.38%), Postives = 146/183 (79.78%), Query Frame = 3
Query:  270 KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTA 818
            K  +  +RNIGI+AHID+GKTT +ERILF+TG  H+I EV   DG  A MD M+ E+E+GITI SAAT+C WKD+QIN+IDTPGHVDFT+EVER++RVLDGA+ V C+VGGVQ QS TV RQ  +Y VPR+ F+NK+DR+GA+ + V +Q +++L+ +   +Q+P+G ED+F+G++DL+++ A
Sbjct:    4 KTPLNMVRNIGIAAHIDAGKTTTSERILFFTGMSHKIGEVH--DGA-ATMDWMEQEKERGITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVAVFCAVGGVQPQSETVWRQANKYRVPRMVFVNKMDRVGANFFNVEEQIKNRLKANPVPIQIPIGAEDEFKGVIDLIEMKA 183          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFG_SYMTH (Elongation factor G OS=Symbiobacterium thermophilum GN=fusA PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.415e-56
Identity = 111/190 (58.42%), Postives = 145/190 (76.32%), Query Frame = 3
Query:  276 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSHGE 845
            S++RLRNIGI AHID+GKTT TERILFYTGR H++ E    +G  A MD M  E+E+GITIQSAAT+C+WKD++INIIDTPGHVDFTVEVER+LRVLDGA+ V C+ GGV+ QS TV RQ  +Y VPRLA++NK+D +GAD ++V+     +L      +Q+P+G ED F+G+VDLV+  A  ++   G+
Sbjct:    6 SLDRLRNIGIMAHIDAGKTTTTERILFYTGRTHKLGETH--EGA-ATMDFMVQEQERGITIQSAATTCSWKDHRINIIDTPGHVDFTVEVERSLRVLDGAVAVFCAKGGVEPQSETVWRQADKYGVPRLAYVNKMDTIGADFFRVIRMMEERLGARPVPIQIPIGAEDTFRGVVDLVRNVAIMYYDDLGK 192          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFG_NITMU (Elongation factor G OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=fusA PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.415e-56
Identity = 112/193 (58.03%), Postives = 148/193 (76.68%), Query Frame = 3
Query:  270 KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-------DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYF 827
            K  +ER RNIG+ AHID+GKTT TERILFYTG  H++ EV   DG  A MD M+ E+E+GITI SAAT+C WK       D++INIIDTPGHVDFT+EVER+LRVLDGA  V C+VGGVQ Q+ TV RQ  +Y+VPRLAF+NK+DR GA+  +V +Q +S+L+ H   +Q+P+G ED+F+G+VDL+++ A ++
Sbjct:    4 KTPIERYRNIGVMAHIDAGKTTTTERILFYTGVSHKLGEVH--DGA-ATMDWMEQEQERGITITSAATTCFWKGMDHNYPDHRINIIDTPGHVDFTIEVERSLRVLDGACTVFCAVGGVQPQTETVWRQANKYKVPRLAFVNKMDRAGANFMRVYEQIQSRLKAHPVPIQLPIGAEDKFEGVVDLIKMKAIHW 193          
The following BLAST results are available for this feature:
BLAST of FC910032 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFG1_TRIEI1.084e-5659.57Elongation factor G 1 OS=Trichodesmium erythraeum ... [more]
EFG_DESAP1.416e-5659.47Elongation factor G OS=Desulforudis audaxviator (s... [more]
EFG_NATTJ1.849e-5658.64Elongation factor G OS=Natranaerobius thermophilus... [more]
EFG_HELPS1.849e-5659.56Elongation factor G OS=Helicobacter pylori (strain... [more]
EFG_HELPJ1.849e-5659.56Elongation factor G OS=Helicobacter pylori J99 GN=... [more]
EFG_HELP21.849e-5659.56Elongation factor G OS=Helicobacter pylori (strain... [more]
EFG_HELAH1.849e-5659.56Elongation factor G OS=Helicobacter acinonychis (s... [more]
EFG_CAMFF1.849e-5657.38Elongation factor G OS=Campylobacter fetus subsp. ... [more]
EFG_SYMTH2.415e-5658.42Elongation factor G OS=Symbiobacterium thermophilu... [more]
EFG_NITMU2.415e-5658.03Elongation factor G OS=Nitrosospira multiformis (s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA27CC11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA27CC11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910032 ID=FC910032; Name=FC910032; organism=Citrus clementina; type=EST; length=857bp
AACAGTACAACAAACCCTCGAACCCCAAACCCTTAAAAAATCTCAGGGTT
TAGGGTTTTAGATAAAAAAAAGCGATGGCTAGATTCCCACGATCTCCAGC
ACCACGTCTCCTCTACACTCTCTTCTCCTCTTCGAGAACGACACCGACCA
AATCCTCACCCCAATCTCCGTCTGCAGCCCTCCTCCAAGGAAACTTCCAC
CTCCAGTCGCGGCAGTTCTCGGCGGGAGGAAACCTCGCACGTGCGAAGGA
TGATAAGGAGCCATGGTGGAAGGAATCAATGGAGCGGCTCCGAAATATCG
GAATCTCGGCGCATATCGATTCCGGAAAAACTACACTAACCGAGCGAATT
CTGTTTTACACTGGACGGATTCACGAGATTCACGAGGTTCGAGGGCGAGA
CGGCGTCGGCGCCAAAATGGATTCTATGGATTTGGAGCGTGAGAAAGGTA
TCACAATTCAGTCAGCCGCCACTAGCTGTGCTTGGAAGGATTACCAGATT
AATATAATTGACACTCCTGGACACGTAGACTTCACAGTTGAAGTAGAAAG
GGCTTTGCGAGTTCTTGATGGCGCAATTCTTGTGCTTTGTAGTGTTGGTG
GCGTGCAAAGTCAATCAATTACCGTTGACCGGCAAATGAGGAGATACGAG
GTGCCAAGGCTGGCTTTCATTAACAAACTTGATAGAATGGGAGCTGATCC
ATGGAAAGTTTTGGATCAGGCAAGGTCTAAGCTGCGGCACCACTGTGCTG
CTGTGCAAGTTCCAATGGGATTGGAAGATCAGTTTCAGGGTCTTGTGGAC
CTTGTGCAGTTAACAGCTTATTATTTTCATGGTTCCCATGGTGAAAAAAA
TTGTCAC
back to top