FC910032

Overview
NameFC910032
Unique NameFC910032
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length857
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFG_JANMA (Elongation factor G OS=Janthinobacterium sp. (strain Marseille) GN=fusA PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.415e-56
Identity = 114/190 (60.00%), Postives = 146/190 (76.84%), Query Frame = 3
Query:  270 KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD-------YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTA 818
            K  +ER RNIGISAHID+GKTT TER+LFYTG  H++ EV   DG  A MD M+ E+E+GITI SAAT+C WK        + INIIDTPGHVDFT+EVER++RVLDGA +V C+VGGVQ QS TV RQ  +Y+VPRLAF+NK+DR GA+ +KV DQ R++L+ +   +QVP+G ED F+G++DLV++ A
Sbjct:    4 KTPIERYRNIGISAHIDAGKTTTTERVLFYTGVNHKLGEVH--DGA-ATMDWMEQEQERGITITSAATTCFWKGMAGNFPAHHINIIDTPGHVDFTIEVERSMRVLDGACMVYCAVGGVQPQSETVWRQANKYKVPRLAFVNKMDRTGANFFKVYDQMRARLKANPVPMQVPIGAEDSFEGVIDLVKMKA 190          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFG_PELTS (Elongation factor G OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=fusA PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 3.155e-56
Identity = 114/183 (62.30%), Postives = 142/183 (77.60%), Query Frame = 3
Query:  279 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYF 827
            +E+ RNIGI AHID+GKTT TERILFYTGR+H+I EV   +G  A MD M  E+E+GITI SAATSC W+D QINIIDTPGHVDFTVEVER+LRVLDGA+ V CSVGGV+ QS TV RQ  +Y VPR+A+INK+DR+GAD  + +   R +L  +  A+Q+P+G+ED F G+VDLV+  A  +
Sbjct:    7 LEKTRNIGIMAHIDAGKTTTTERILFYTGRVHKIGEVH--EGT-ATMDWMAQEQERGITITSAATSCRWRDCQINIIDTPGHVDFTVEVERSLRVLDGAVAVFCSVGGVEPQSETVWRQADKYGVPRIAYINKMDRVGADFHRGIQMIRERLGANPVAIQLPIGVEDGFCGVVDLVRNRAIIY 186          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFG_HELPY (Elongation factor G OS=Helicobacter pylori GN=fusA PE=3 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 3.155e-56
Identity = 109/183 (59.56%), Postives = 143/183 (78.14%), Query Frame = 3
Query:  270 KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTA 818
            K  + R+RNIGI+AHID+GKTT +ERILFYTG  H+I EV   DG  A MD M+ E+E+GITI SAAT+C WKD+QIN+IDTPGHVDFT+EVER++RVLDGA+ V CSVGGVQ QS TV RQ  +Y VPR+ F+NK+DR+GA+ + V +Q + +L+ +   + +P+G ED F G++DLVQ+ A
Sbjct:    4 KTPLNRIRNIGIAAHIDAGKTTTSERILFYTGVSHKIGEVH--DGA-ATMDWMEQEKERGITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYNVENQIKLRLKANPVPINIPIGAEDTFIGVIDLVQMKA 183          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFG_HELPH (Elongation factor G OS=Helicobacter pylori (strain HPAG1) GN=fusA PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 3.155e-56
Identity = 109/183 (59.56%), Postives = 143/183 (78.14%), Query Frame = 3
Query:  270 KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTA 818
            K  + R+RNIGI+AHID+GKTT +ERILFYTG  H+I EV   DG  A MD M+ E+E+GITI SAAT+C WKD+QIN+IDTPGHVDFT+EVER++RVLDGA+ V CSVGGVQ QS TV RQ  +Y VPR+ F+NK+DR+GA+ + V +Q + +L+ +   + +P+G ED F G++DLVQ+ A
Sbjct:    4 KTPLNRIRNIGIAAHIDAGKTTTSERILFYTGVSHKIGEVH--DGA-ATMDWMEQEKERGITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYNVENQIKLRLKANPVPINIPIGAEDTFIGVIDLVQMKA 183          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFG_HELPG (Elongation factor G OS=Helicobacter pylori (strain G27) GN=fusA PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 3.155e-56
Identity = 109/183 (59.56%), Postives = 143/183 (78.14%), Query Frame = 3
Query:  270 KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTA 818
            K  + R+RNIGI+AHID+GKTT +ERILFYTG  H+I EV   DG  A MD M+ E+E+GITI SAAT+C WKD+QIN+IDTPGHVDFT+EVER++RVLDGA+ V CSVGGVQ QS TV RQ  +Y VPR+ F+NK+DR+GA+ + V +Q + +L+ +   + +P+G ED F G++DLVQ+ A
Sbjct:    4 KTPLNRIRNIGIAAHIDAGKTTTSERILFYTGVSHKIGEVH--DGA-ATMDWMEQEKERGITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYNVENQIKLRLKANPVPINIPIGTEDTFIGVIDLVQMKA 183          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFG_HELHP (Elongation factor G OS=Helicobacter hepaticus GN=fusA PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 3.155e-56
Identity = 108/183 (59.02%), Postives = 142/183 (77.60%), Query Frame = 3
Query:  270 KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTA 818
            K  + R+RNIGI+AHID+GKTT +ERILFYTG  H+I EV   DG  A MD M+ E+E+GITI SA T+C W+DYQIN+IDTPGHVDFT+EVER++RVLDGAI V CSVGGVQ QS TV RQ  +Y VPR+ F+NK+DR+GA+ + V  Q + +L+ +   + +P+G E+ F+G++DLVQ+ A
Sbjct:    4 KTPLVRIRNIGIAAHIDAGKTTTSERILFYTGVSHKIGEVH--DGA-ATMDWMEQEKERGITITSATTTCFWRDYQINLIDTPGHVDFTIEVERSMRVLDGAIAVFCSVGGVQPQSETVWRQANKYGVPRMVFVNKMDRIGANFYSVESQIKQRLKANPVPINIPIGAEENFKGVIDLVQMKA 183          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFG_MOOTA (Elongation factor G OS=Moorella thermoacetica (strain ATCC 39073) GN=fusA PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 4.120e-56
Identity = 110/183 (60.11%), Postives = 142/183 (77.60%), Query Frame = 3
Query:  279 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYF 827
            +E+ RNIGI AHID+GKTT TERILFYTGR+H + EV   DG  A MD M  E+E+GITI SAAT+C W++++INIIDTPGHVDFTVEVER+LRVLDGA+ V CSVGGV+ QS TV RQ  +Y VPR+A+INK+DR+GAD ++ +     +L  +   +Q+P+G ED FQG+VDL+ + A Y+
Sbjct:    7 LEKTRNIGIMAHIDAGKTTTTERILFYTGRVHRMGEVH--DG-NATMDWMIQEQERGITITSAATTCFWRNHRINIIDTPGHVDFTVEVERSLRVLDGAVAVFCSVGGVEPQSETVWRQADKYGVPRIAYINKMDRVGADFFRGVRMIAERLGANPVPIQLPIGAEDSFQGMVDLINMKAIYY 186          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFG_HELMI (Elongation factor G OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=fusA PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 4.120e-56
Identity = 110/183 (60.11%), Postives = 142/183 (77.60%), Query Frame = 3
Query:  279 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYF 827
            + + RNIGI AHID+GKTT TERILFYTGR+H+I EV   DG  A MD M  E+E+GITI SAAT+C W+ ++INIIDTPGHVDFTVEVER+LRVLDGA+ V CSVGGV+ QS TV RQ  +Y VPR+A+INK+DR+GAD ++ +   R +L  +   +Q+P+G EDQF+G+VDL+ + A  +
Sbjct:    7 LNKTRNIGIMAHIDAGKTTTTERILFYTGRVHKIGEVH--DGA-ATMDWMVQEQERGITITSAATTCQWRGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVFCSVGGVEPQSETVWRQADKYGVPRIAYINKMDRIGADFFRGVSMIRERLGANPVPIQIPIGAEDQFKGIVDLITMKAIIY 186          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFG_CLOTH (Elongation factor G OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=fusA PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 7.028e-56
Identity = 108/190 (56.84%), Postives = 144/190 (75.79%), Query Frame = 3
Query:  276 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSHGE 845
            S+E  RNIGI AHID+GKTT TERILFYTGR+H+I E    +G  A MD M+ E+E+GITI SAAT+  WK  +INIIDTPGHVDFTVEVER+LRVLDGA+ V C+ GGV+ QS TV RQ  +Y+VPR+A++NK+D MGAD +  +   + +L+ +   +Q+P+G ED FQG++DL+++ AYY+    G+
Sbjct:    6 SLENTRNIGIMAHIDAGKTTTTERILFYTGRVHKIGETH--EG-SATMDWMEQEQERGITITSAATTAQWKGTRINIIDTPGHVDFTVEVERSLRVLDGAVAVFCAKGGVEPQSETVWRQADKYKVPRMAYVNKMDIMGADFFNCIKMMKERLQANPVPIQLPIGKEDNFQGIIDLIEMKAYYYMDDLGK 192          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFG_CAMHC (Elongation factor G OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=fusA PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 7.028e-56
Identity = 107/183 (58.47%), Postives = 143/183 (78.14%), Query Frame = 3
Query:  270 KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTA 818
            K  +  +RNIGI+AHID+GKTT +ERILF+TG  H+I E    +G  A MD MD E+E+GITI SAAT+C W+D+QIN+IDTPGHVDFT+EVER++RVLDGA+ V CSVGGVQ QS TV RQ  +Y VPR+AF+NK+DR+GA+ + V  Q + +L+ +   +Q+P+G ED F+G+VDL+Q+ A
Sbjct:    4 KTPLHMVRNIGIAAHIDAGKTTTSERILFFTGISHKIGETH--EGT-ATMDWMDQEKERGITITSAATTCFWRDHQINLIDTPGHVDFTIEVERSMRVLDGAVAVFCSVGGVQPQSETVWRQANKYHVPRIAFVNKMDRVGANFYNVEKQIKDRLKANPVPLQIPIGAEDNFKGVVDLIQMKA 183          
The following BLAST results are available for this feature:
BLAST of FC910032 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFG_JANMA2.415e-5660.00Elongation factor G OS=Janthinobacterium sp. (stra... [more]
EFG_PELTS3.155e-5662.30Elongation factor G OS=Pelotomaculum thermopropion... [more]
EFG_HELPY3.155e-5659.56Elongation factor G OS=Helicobacter pylori GN=fusA... [more]
EFG_HELPH3.155e-5659.56Elongation factor G OS=Helicobacter pylori (strain... [more]
EFG_HELPG3.155e-5659.56Elongation factor G OS=Helicobacter pylori (strain... [more]
EFG_HELHP3.155e-5659.02Elongation factor G OS=Helicobacter hepaticus GN=f... [more]
EFG_MOOTA4.120e-5660.11Elongation factor G OS=Moorella thermoacetica (str... [more]
EFG_HELMI4.120e-5660.11Elongation factor G OS=Heliobacterium modesticaldu... [more]
EFG_CLOTH7.028e-5656.84Elongation factor G OS=Clostridium thermocellum (s... [more]
EFG_CAMHC7.028e-5658.47Elongation factor G OS=Campylobacter hominis (stra... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA27CC11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA27CC11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910032 ID=FC910032; Name=FC910032; organism=Citrus clementina; type=EST; length=857bp
AACAGTACAACAAACCCTCGAACCCCAAACCCTTAAAAAATCTCAGGGTT
TAGGGTTTTAGATAAAAAAAAGCGATGGCTAGATTCCCACGATCTCCAGC
ACCACGTCTCCTCTACACTCTCTTCTCCTCTTCGAGAACGACACCGACCA
AATCCTCACCCCAATCTCCGTCTGCAGCCCTCCTCCAAGGAAACTTCCAC
CTCCAGTCGCGGCAGTTCTCGGCGGGAGGAAACCTCGCACGTGCGAAGGA
TGATAAGGAGCCATGGTGGAAGGAATCAATGGAGCGGCTCCGAAATATCG
GAATCTCGGCGCATATCGATTCCGGAAAAACTACACTAACCGAGCGAATT
CTGTTTTACACTGGACGGATTCACGAGATTCACGAGGTTCGAGGGCGAGA
CGGCGTCGGCGCCAAAATGGATTCTATGGATTTGGAGCGTGAGAAAGGTA
TCACAATTCAGTCAGCCGCCACTAGCTGTGCTTGGAAGGATTACCAGATT
AATATAATTGACACTCCTGGACACGTAGACTTCACAGTTGAAGTAGAAAG
GGCTTTGCGAGTTCTTGATGGCGCAATTCTTGTGCTTTGTAGTGTTGGTG
GCGTGCAAAGTCAATCAATTACCGTTGACCGGCAAATGAGGAGATACGAG
GTGCCAAGGCTGGCTTTCATTAACAAACTTGATAGAATGGGAGCTGATCC
ATGGAAAGTTTTGGATCAGGCAAGGTCTAAGCTGCGGCACCACTGTGCTG
CTGTGCAAGTTCCAATGGGATTGGAAGATCAGTTTCAGGGTCTTGTGGAC
CTTGTGCAGTTAACAGCTTATTATTTTCATGGTTCCCATGGTGAAAAAAA
TTGTCAC
back to top