FC910032

Overview
NameFC910032
Unique NameFC910032
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length857
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFGM_PICST (Elongation factor G, mitochondrial OS=Pichia stipitis GN=MEF1 PE=3 SV=2)

HSP 1 Score: 272.707 bits (696), Expect = 1.841e-72
Identity = 130/195 (66.67%), Postives = 160/195 (82.05%), Query Frame = 3
Query:  273 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD----YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSHGE 845
            ++ +R+RNIGISAHIDSGKTT TER+LFYTGRI  IHEVRGRD VGAKMD MDLEREKGITIQSAAT C+W      Y  N+IDTPGH+DFT+EVERALRVLDGA+LV+C+V GVQSQ++TVDRQMRRY VPR+ FINK+DRMGADP++ ++Q   KL+   AA+QVP+G E + +G+V+++   A Y  G+ GE
Sbjct:   77 DASKRMRNIGISAHIDSGKTTFTERVLFYTGRIKAIHEVRGRDAVGAKMDHMDLEREKGITIQSAATYCSWDKEDTAYHFNLIDTPGHIDFTIEVERALRVLDGAVLVVCAVSGVQSQTVTVDRQMRRYNVPRVTFINKMDRMGADPFRAIEQINLKLKTPAAAIQVPIGAESELKGVVNIIDRVALYNEGAQGE 271          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFGM_ASHGO (Elongation factor G, mitochondrial OS=Ashbya gossypii GN=MEF1 PE=3 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 1.193e-71
Identity = 131/190 (68.95%), Postives = 154/190 (81.05%), Query Frame = 3
Query:  288 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW----KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSHGE 845
            LRNIG+SAHIDSGKTT TER+L+YTGRI  IHEVRGRD VGAKMD MDLEREKGITIQSAAT C+W    + Y  N+IDTPGH+DFT+EVERALRVLDGA+LV+C+V GVQSQ++TVDRQMRRY VPR+ FINK+DRMGADP+K + Q  +KLR   AAV VP+G E    G+VD++   A Y  G +GE
Sbjct:   68 LRNIGVSAHIDSGKTTFTERVLYYTGRIKAIHEVRGRDSVGAKMDHMDLEREKGITIQSAATYCSWDKDQESYHFNLIDTPGHIDFTIEVERALRVLDGAVLVVCAVSGVQSQTVTVDRQMRRYNVPRVTFINKMDRMGADPFKAIQQINTKLRIPAAAVHVPIGSESDLCGVVDIINRVAIYNEGENGE 257          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFG1_TREPA (Elongation factor G 1 OS=Treponema pallidum GN=fusA PE=3 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 1.193e-71
Identity = 130/184 (70.65%), Postives = 155/184 (84.24%), Query Frame = 3
Query:  291 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSHG 842
            RNIGISAHIDSGKTTL+ERILFY  RIH IHEVRG+DGVGA MD+M+LERE+GITIQSA+T   WK + IN+IDTPGHVDFT+EVER+LRVLDGA+LVLCSV GVQSQSITVDRQ+RRY VPR++FINK DR GA+P+KV  Q R KL  +   +Q+P+GLED+ +G++DL+ L A YF G  G
Sbjct:    9 RNIGISAHIDSGKTTLSERILFYCDRIHAIHEVRGKDGVGATMDNMELERERGITIQSASTQVQWKGHTINVIDTPGHVDFTIEVERSLRVLDGAVLVLCSVAGVQSQSITVDRQLRRYHVPRISFINKCDRTGANPFKVCAQLREKLSLNAHLMQLPIGLEDRLEGVIDLISLKALYFEGESG 192          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFGM_NEUCR (Elongation factor G, mitochondrial OS=Neurospora crassa GN=mef-1 PE=3 SV=2)

HSP 1 Score: 268.47 bits (685), Expect = 3.472e-71
Identity = 128/196 (65.31%), Postives = 160/196 (81.63%), Query Frame = 3
Query:  279 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--------YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSHG 842
            + R+RNIGI+AHIDSGKTT+TERILFYTGR+  IHEVRGRDGVGAKMDSM+LERE+GITIQSAAT   WK         Y IN+IDTPGH+DFT+EVERA+RVLDGA++VLC+V GVQSQ+ITVDRQM+RY VPR++F+NK+DRMGA+PWK ++Q  +KL+   AA+QVP+G E + +G+VDL+ +      G  G
Sbjct:   98 LARVRNIGIAAHIDSGKTTVTERILFYTGRVKAIHEVRGRDGVGAKMDSMELERERGITIQSAATFADWKKKEKGVEETYHINLIDTPGHIDFTIEVERAMRVLDGAVMVLCAVSGVQSQTITVDRQMKRYNVPRISFVNKMDRMGANPWKAVEQINTKLKIPAAAIQVPIGSEKELEGVVDLIDMKCIRNDGQRG 293          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFGM_CRYNE (Elongation factor G, mitochondrial OS=Cryptococcus neoformans GN=MEF1 PE=3 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 3.472e-71
Identity = 137/213 (64.32%), Postives = 163/213 (76.53%), Query Frame = 3
Query:  270 KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW--------------------KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSHGEK 848
            K  + R RN+GISAHIDSGKTTLTER+L+YTGRI +IHEVRGRD VGAKMDSM+LEREKGITIQSAAT   W                    + + INIIDTPGHVDFT+EVERALRVLDGA+LVLC+V GVQSQ+ITVDRQMRRY VPRLAFINK+DR G++P++V+ Q R KL+ + AAVQVP+G E  F G+VD+V++ A Y  G  G +
Sbjct:   92 KLRLRRQRNVGISAHIDSGKTTLTERVLYYTGRIRDIHEVRGRDAVGAKMDSMELEREKGITIQSAATFADWVAPKPPTELKEGETVGNTDKQKFAINIIDTPGHVDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRYNVPRLAFINKMDRAGSNPFRVIGQLRGKLKMNAAAVQVPIGSESDFAGVVDIVRMKAIYNEGVKGNQ 304          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFGM_DANRE (Elongation factor G, mitochondrial OS=Danio rerio GN=gfm1 PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 4.534e-71
Identity = 128/188 (68.09%), Postives = 159/188 (84.57%), Query Frame = 3
Query:  282 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSHGE 845
            ER+RNIGISAHIDSGKTTLTER+L+YTGRI E+HEVRG+DGVGA MDSM+LER++GITIQSAAT   WK++ INIIDTPGHVDFT+EVER+LRVLDGA+LVLC+VGGVQ Q++TV+RQM+RY VP L FINKLDR+GA+P + L Q R+KL  + A V +P+GLE   +G++DL++  +  F G  GE
Sbjct:   39 ERIRNIGISAHIDSGKTTLTERVLYYTGRIAEMHEVRGKDGVGAIMDSMELERQRGITIQSAATYTMWKNHNINIIDTPGHVDFTIEVERSLRVLDGAVLVLCAVGGVQCQTVTVNRQMKRYSVPFLTFINKLDRLGANPNRALQQLRTKLNQNAAFVNIPIGLEGNLRGIIDLIEERSIVFDGPFGE 226          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFG_RHOBA (Elongation factor G OS=Rhodopirellula baltica GN=fusA PE=3 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 2.939e-70
Identity = 130/191 (68.06%), Postives = 160/191 (83.77%), Query Frame = 3
Query:  276 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSHGEK 848
            ++E++RNIGISAHIDSGKTTL+ERILFY+GRIH+I +VRG  G GA MD M+LE+E+GITI SAATS     Y IN+IDTPGHVDFTVEVER+LRVLDGA+LVLCSVGGVQSQSITVDRQM+RY++PRLAFINK+DR GA+P +V++Q R KL       Q+P+G E+ F+G+VDL+++ AY F G  GEK
Sbjct:    2 NLEKVRNIGISAHIDSGKTTLSERILFYSGRIHKIEDVRG-GGDGATMDHMELEKERGITITSAATSVTHNGYHINLIDTPGHVDFTVEVERSLRVLDGAVLVLCSVGGVQSQSITVDRQMKRYQIPRLAFINKMDRTGANPRRVVEQLREKLGADAFLAQIPIGAEENFRGVVDLIEMVAYTFEGDQGEK 191          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFGM_CHAGB (Elongation factor G, mitochondrial OS=Chaetomium globosum GN=MEF1 PE=3 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 2.106e-68
Identity = 125/196 (63.78%), Postives = 158/196 (80.61%), Query Frame = 3
Query:  279 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--------YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSHG 842
            +  +RNIGI+AHIDSGKTT++ERILFYTGR   IHEVRGRDGVGAKMDSM+LERE+GITIQSAAT   WK         Y  N+IDTPGH+DFT+EVERA+RVLDGA++VLC+V GVQSQ+ITVDRQM+RY VPR++F+NK+DRMG++P+K ++   SKL+   AAVQ+P+G E +F+G+VDL+ + A    G  G
Sbjct:   96 LSMVRNIGIAAHIDSGKTTVSERILFYTGRTKAIHEVRGRDGVGAKMDSMELERERGITIQSAATFADWKKVENGVEETYHFNLIDTPGHIDFTIEVERAMRVLDGAVMVLCAVSGVQSQTITVDRQMKRYNVPRISFVNKMDRMGSNPFKAVEMINSKLKIPAAAVQIPIGSEKEFEGVVDLIHMRAIRNDGLRG 291          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFGM_CAEEL (Elongation factor G, mitochondrial OS=Caenorhabditis elegans GN=F29C12.4 PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.783e-67
Identity = 125/188 (66.49%), Postives = 149/188 (79.26%), Query Frame = 3
Query:  279 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSHG 842
            +ER+RNIGISAHIDSGKTT+TERIL+Y GRI  +HEVRG+D VGA MD MDLER++GITIQSAAT   W    INIIDTPGHVDFTVEVERALRVLDGA+LVLC VGGVQSQ+ TV+RQ+ RY VP + F+NK+DR GA P K LD  R+KL H+ A + +P+G +  F G+VDLV+  A Y+ G  G
Sbjct:   41 IERIRNIGISAHIDSGKTTVTERILYYAGRIDSMHEVRGKDDVGATMDFMDLERQRGITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCGVGGVQSQTFTVNRQLARYNVPFICFVNKMDRNGATPLKALDGLRNKLNHNAALIHLPIGKDSNFNGIVDLVEGHALYYEGEGG 228          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFGM_CAEBR (Elongation factor G, mitochondrial OS=Caenorhabditis briggsae GN=CBG02783 PE=3 SV=2)

HSP 1 Score: 255.373 bits (651), Expect = 3.041e-67
Identity = 125/188 (66.49%), Postives = 149/188 (79.26%), Query Frame = 3
Query:  279 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSHG 842
            +ER+RNIGISAHIDSGKTT+TERIL+Y GRI  +HEVRG+D VGA MD M+LER++GITIQSAAT   W    INIIDTPGHVDFTVEVERALRVLDGA+LVLC VGGVQSQ+ TV+RQ+ RY VP + F+NK+DR GA P K LD  R+KL H+ A V +P+G +  F G+VDLV+  A Y+ G  G
Sbjct:   40 IERIRNIGISAHIDSGKTTVTERILYYAGRIDSMHEVRGKDDVGATMDFMELERQRGITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCGVGGVQSQTFTVNRQLARYNVPFICFVNKMDRNGASPLKALDGLRNKLNHNAALVHLPIGKDSNFNGIVDLVEGHALYYEGEGG 227          
The following BLAST results are available for this feature:
BLAST of FC910032 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFGM_PICST1.841e-7266.67Elongation factor G, mitochondrial OS=Pichia stipi... [more]
EFGM_ASHGO1.193e-7168.95Elongation factor G, mitochondrial OS=Ashbya gossy... [more]
EFG1_TREPA1.193e-7170.65Elongation factor G 1 OS=Treponema pallidum GN=fus... [more]
EFGM_NEUCR3.472e-7165.31Elongation factor G, mitochondrial OS=Neurospora c... [more]
EFGM_CRYNE3.472e-7164.32Elongation factor G, mitochondrial OS=Cryptococcus... [more]
EFGM_DANRE4.534e-7168.09Elongation factor G, mitochondrial OS=Danio rerio ... [more]
EFG_RHOBA2.939e-7068.06Elongation factor G OS=Rhodopirellula baltica GN=f... [more]
EFGM_CHAGB2.106e-6863.78Elongation factor G, mitochondrial OS=Chaetomium g... [more]
EFGM_CAEEL1.783e-6766.49Elongation factor G, mitochondrial OS=Caenorhabdit... [more]
EFGM_CAEBR3.041e-6766.49Elongation factor G, mitochondrial OS=Caenorhabdit... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA27CC11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA27CC11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910032 ID=FC910032; Name=FC910032; organism=Citrus clementina; type=EST; length=857bp
AACAGTACAACAAACCCTCGAACCCCAAACCCTTAAAAAATCTCAGGGTT
TAGGGTTTTAGATAAAAAAAAGCGATGGCTAGATTCCCACGATCTCCAGC
ACCACGTCTCCTCTACACTCTCTTCTCCTCTTCGAGAACGACACCGACCA
AATCCTCACCCCAATCTCCGTCTGCAGCCCTCCTCCAAGGAAACTTCCAC
CTCCAGTCGCGGCAGTTCTCGGCGGGAGGAAACCTCGCACGTGCGAAGGA
TGATAAGGAGCCATGGTGGAAGGAATCAATGGAGCGGCTCCGAAATATCG
GAATCTCGGCGCATATCGATTCCGGAAAAACTACACTAACCGAGCGAATT
CTGTTTTACACTGGACGGATTCACGAGATTCACGAGGTTCGAGGGCGAGA
CGGCGTCGGCGCCAAAATGGATTCTATGGATTTGGAGCGTGAGAAAGGTA
TCACAATTCAGTCAGCCGCCACTAGCTGTGCTTGGAAGGATTACCAGATT
AATATAATTGACACTCCTGGACACGTAGACTTCACAGTTGAAGTAGAAAG
GGCTTTGCGAGTTCTTGATGGCGCAATTCTTGTGCTTTGTAGTGTTGGTG
GCGTGCAAAGTCAATCAATTACCGTTGACCGGCAAATGAGGAGATACGAG
GTGCCAAGGCTGGCTTTCATTAACAAACTTGATAGAATGGGAGCTGATCC
ATGGAAAGTTTTGGATCAGGCAAGGTCTAAGCTGCGGCACCACTGTGCTG
CTGTGCAAGTTCCAATGGGATTGGAAGATCAGTTTCAGGGTCTTGTGGAC
CTTGTGCAGTTAACAGCTTATTATTTTCATGGTTCCCATGGTGAAAAAAA
TTGTCAC
back to top