FC910032

Overview
NameFC910032
Unique NameFC910032
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length857
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFG_CAMC1 (Elongation factor G OS=Campylobacter concisus (strain 13826) GN=fusA PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 4.867e-57
Identity = 108/187 (57.75%), Postives = 147/187 (78.61%), Query Frame = 3
Query:  270 KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFH 830
            K  + ++RNIGI+AHID+GKTT +ERILF+TG  H+I EV   DG  A MD M+ E+E+GITI SAAT+  WK YQ+N+IDTPGHVDFT+EVER++RVLDGA+ V CSVGGVQ QS TV RQ  +Y VPR+ F+NK+DR+GA+ ++V +Q R +L+ +   +Q+P+G ED F+G+VDLV++ AY ++
Sbjct:    5 KTPLHKVRNIGIAAHIDAGKTTTSERILFFTGMSHKIGEVH--DGA-ATMDWMEQEKERGITITSAATTAFWKGYQVNLIDTPGHVDFTIEVERSMRVLDGAVAVFCSVGGVQPQSETVWRQANKYHVPRIVFVNKMDRIGANFFRVEEQIRERLKANPVPIQIPIGAEDNFKGVVDLVRMKAYVWN 188          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFG_CAMJR (Elongation factor G OS=Campylobacter jejuni (strain RM1221) GN=fusA PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 6.356e-57
Identity = 108/180 (60.00%), Postives = 145/180 (80.56%), Query Frame = 3
Query:  279 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTA 818
            ++++RNIGI+AHID+GKTT +ERILF+TG  H+I EV   DG  A MD M+ E+E+GITI SAAT+C WKD+QIN+IDTPGHVDFT+EVER++RVLDGA+ V CSVGGVQ QS TV RQ  +Y VPR+ F+NK+DR+GA+ + V DQ R++L+ +   +Q+P+G ED F+G++DLV + A
Sbjct:    7 LKKVRNIGIAAHIDAGKTTTSERILFFTGMSHKIGEVH--DGA-ATMDWMEQEKERGITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVAVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYNVEDQIRNRLKANPVPLQIPIGAEDNFKGVIDLVTMKA 183          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFG_CAMJJ (Elongation factor G OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=fusA PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 6.356e-57
Identity = 108/180 (60.00%), Postives = 145/180 (80.56%), Query Frame = 3
Query:  279 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTA 818
            ++++RNIGI+AHID+GKTT +ERILF+TG  H+I EV   DG  A MD M+ E+E+GITI SAAT+C WKD+QIN+IDTPGHVDFT+EVER++RVLDGA+ V CSVGGVQ QS TV RQ  +Y VPR+ F+NK+DR+GA+ + V DQ R++L+ +   +Q+P+G ED F+G++DLV + A
Sbjct:    7 LKKVRNIGIAAHIDAGKTTTSERILFFTGMSHKIGEVH--DGA-ATMDWMEQEKERGITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVAVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYNVEDQIRNRLKANPVPLQIPIGAEDNFKGVIDLVTMKA 183          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFG_CAMJE (Elongation factor G OS=Campylobacter jejuni GN=fusA PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 6.356e-57
Identity = 108/180 (60.00%), Postives = 145/180 (80.56%), Query Frame = 3
Query:  279 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTA 818
            ++++RNIGI+AHID+GKTT +ERILF+TG  H+I EV   DG  A MD M+ E+E+GITI SAAT+C WKD+QIN+IDTPGHVDFT+EVER++RVLDGA+ V CSVGGVQ QS TV RQ  +Y VPR+ F+NK+DR+GA+ + V DQ R++L+ +   +Q+P+G ED F+G++DLV + A
Sbjct:    7 LKKVRNIGIAAHIDAGKTTTSERILFFTGMSHKIGEVH--DGA-ATMDWMEQEKERGITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVAVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYNVEDQIRNRLKANPVPLQIPIGAEDNFKGVIDLVTMKA 183          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFG_CAMJD (Elongation factor G OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=fusA PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 6.356e-57
Identity = 108/180 (60.00%), Postives = 145/180 (80.56%), Query Frame = 3
Query:  279 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTA 818
            ++++RNIGI+AHID+GKTT +ERILF+TG  H+I EV   DG  A MD M+ E+E+GITI SAAT+C WKD+QIN+IDTPGHVDFT+EVER++RVLDGA+ V CSVGGVQ QS TV RQ  +Y VPR+ F+NK+DR+GA+ + V DQ R++L+ +   +Q+P+G ED F+G++DLV + A
Sbjct:    7 LKKVRNIGIAAHIDAGKTTTSERILFFTGMSHKIGEVH--DGA-ATMDWMEQEKERGITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVAVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYNVEDQIRNRLKANPVPLQIPIGAEDNFKGVIDLVTMKA 183          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFG_CAMJ8 (Elongation factor G OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=fusA PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 6.356e-57
Identity = 108/180 (60.00%), Postives = 145/180 (80.56%), Query Frame = 3
Query:  279 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTA 818
            ++++RNIGI+AHID+GKTT +ERILF+TG  H+I EV   DG  A MD M+ E+E+GITI SAAT+C WKD+QIN+IDTPGHVDFT+EVER++RVLDGA+ V CSVGGVQ QS TV RQ  +Y VPR+ F+NK+DR+GA+ + V DQ R++L+ +   +Q+P+G ED F+G++DLV + A
Sbjct:    7 LKKVRNIGIAAHIDAGKTTTSERILFFTGMSHKIGEVH--DGA-ATMDWMEQEKERGITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVAVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYNVEDQIRNRLKANPVPLQIPIGAEDNFKGVIDLVTMKA 183          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFG_CAMC5 (Elongation factor G OS=Campylobacter curvus (strain 525.92) GN=fusA PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 6.356e-57
Identity = 108/184 (58.70%), Postives = 144/184 (78.26%), Query Frame = 3
Query:  270 KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAY 821
            K  +  +RNIGI+AHID+GKTT +ERILF+TG  H+I EV   DG  A MD M+ E+E+GITI SAAT+C WK +QIN+IDTPGHVDFT+EVER++RVLDGA+ V CSVGGVQ QS TV RQ  +Y VPR+ F+NK+DR+GA+ + V  Q R++L+ +   +Q+P+G ED F+G++DLV++ AY
Sbjct:    5 KTPLHMVRNIGIAAHIDAGKTTTSERILFFTGMSHKIGEVH--DGA-ATMDWMEQEKERGITITSAATTCFWKQHQINLIDTPGHVDFTIEVERSMRVLDGAVAVFCSVGGVQPQSETVWRQANKYHVPRIVFVNKMDRIGANFYNVESQIRNRLKANPVPIQIPIGAEDDFKGVIDLVRMKAY 185          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFG_WOLSU (Elongation factor G OS=Wolinella succinogenes GN=fusA PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 8.301e-57
Identity = 110/183 (60.11%), Postives = 141/183 (77.05%), Query Frame = 3
Query:  270 KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTA 818
            K  + R+RNIGI+AHID+GKTT TERILFYTG  H++ EV   DG  A MD M+ E+E+GITI SAAT+C WKDYQ+NIIDTPGHVDFT+EVER++RVLDGA+ V CSVGGVQ QS TV RQ  +Y VPR+ F+NK+DR+GA+ + V  Q   +L+     V +P+G ED F+G++DL+Q+ A
Sbjct:    4 KIPLNRIRNIGIAAHIDAGKTTTTERILFYTGVSHKVGEVH--DGA-ATMDWMEQEKERGITITSAATTCFWKDYQVNIIDTPGHVDFTIEVERSMRVLDGAVAVFCSVGGVQPQSETVWRQANKYGVPRMVFVNKMDRIGANFYNVESQISDRLKARPVPVVIPVGAEDTFKGVIDLLQMKA 183          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFG_HALOH (Elongation factor G OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=fusA PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 8.301e-57
Identity = 110/190 (57.89%), Postives = 146/190 (76.84%), Query Frame = 3
Query:  279 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSHGEK 848
            +++ RNIGI AHID+GKTT TERIL+YTGR+H++ EV   DG  A MD M+ E+E+GITI SAAT+C W+ ++INIIDTPGHVDFTVEVER+LRVLDGAI + C+VGGV+ QS TV RQ  +Y+VPR+AF+NK+DRMGAD + V++    +L  +   +Q+P+G ED F+G+VDLV + A  +    G K
Sbjct:    7 LKKTRNIGIMAHIDAGKTTTTERILYYTGRVHKMGEVH--DGA-AVMDWMEQEQERGITITSAATTCEWQKHRINIIDTPGHVDFTVEVERSLRVLDGAIALFCAVGGVEPQSETVWRQADKYQVPRIAFVNKMDRMGADFFHVIEMMEDRLGANAVPLQIPIGSEDDFEGIVDLVTMDAVVYKDDLGVK 193          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFG_SPIPL (Elongation factor G OS=Spirulina platensis GN=fusA PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.084e-56
Identity = 113/188 (60.11%), Postives = 139/188 (73.94%), Query Frame = 3
Query:  279 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSHG 842
            +ER+RNIGI+AHID+GKTT TERILFY+G +H++ EV     V    D M  ERE+GITI +AA S +W D++INIIDTPGHVDFT+EVER++RVLDG I V CSVGGVQ QS TV RQ  RY+VPR+AFINK+DR GAD +KV  Q R +LR +   +QVP+G E  F GLVDLV +  Y +    G
Sbjct:    7 LERVRNIGIAAHIDAGKTTTTERILFYSGVVHKMGEVHEGTAV---TDWMAQERERGITITAAAISTSWLDHRINIIDTPGHVDFTIEVERSMRVLDGVIAVFCSVGGVQPQSETVWRQAERYQVPRIAFINKMDRTGADFFKVYGQIRDRLRANAVPIQVPVGRESDFHGLVDLVAMKTYLYTNDLG 191          
The following BLAST results are available for this feature:
BLAST of FC910032 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFG_CAMC14.867e-5757.75Elongation factor G OS=Campylobacter concisus (str... [more]
EFG_CAMJR6.356e-5760.00Elongation factor G OS=Campylobacter jejuni (strai... [more]
EFG_CAMJJ6.356e-5760.00Elongation factor G OS=Campylobacter jejuni subsp.... [more]
EFG_CAMJE6.356e-5760.00Elongation factor G OS=Campylobacter jejuni GN=fus... [more]
EFG_CAMJD6.356e-5760.00Elongation factor G OS=Campylobacter jejuni subsp.... [more]
EFG_CAMJ86.356e-5760.00Elongation factor G OS=Campylobacter jejuni subsp.... [more]
EFG_CAMC56.356e-5758.70Elongation factor G OS=Campylobacter curvus (strai... [more]
EFG_WOLSU8.301e-5760.11Elongation factor G OS=Wolinella succinogenes GN=f... [more]
EFG_HALOH8.301e-5757.89Elongation factor G OS=Halothermothrix orenii (str... [more]
EFG_SPIPL1.084e-5660.11Elongation factor G OS=Spirulina platensis GN=fusA... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA27CC11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA27CC11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910032 ID=FC910032; Name=FC910032; organism=Citrus clementina; type=EST; length=857bp
AACAGTACAACAAACCCTCGAACCCCAAACCCTTAAAAAATCTCAGGGTT
TAGGGTTTTAGATAAAAAAAAGCGATGGCTAGATTCCCACGATCTCCAGC
ACCACGTCTCCTCTACACTCTCTTCTCCTCTTCGAGAACGACACCGACCA
AATCCTCACCCCAATCTCCGTCTGCAGCCCTCCTCCAAGGAAACTTCCAC
CTCCAGTCGCGGCAGTTCTCGGCGGGAGGAAACCTCGCACGTGCGAAGGA
TGATAAGGAGCCATGGTGGAAGGAATCAATGGAGCGGCTCCGAAATATCG
GAATCTCGGCGCATATCGATTCCGGAAAAACTACACTAACCGAGCGAATT
CTGTTTTACACTGGACGGATTCACGAGATTCACGAGGTTCGAGGGCGAGA
CGGCGTCGGCGCCAAAATGGATTCTATGGATTTGGAGCGTGAGAAAGGTA
TCACAATTCAGTCAGCCGCCACTAGCTGTGCTTGGAAGGATTACCAGATT
AATATAATTGACACTCCTGGACACGTAGACTTCACAGTTGAAGTAGAAAG
GGCTTTGCGAGTTCTTGATGGCGCAATTCTTGTGCTTTGTAGTGTTGGTG
GCGTGCAAAGTCAATCAATTACCGTTGACCGGCAAATGAGGAGATACGAG
GTGCCAAGGCTGGCTTTCATTAACAAACTTGATAGAATGGGAGCTGATCC
ATGGAAAGTTTTGGATCAGGCAAGGTCTAAGCTGCGGCACCACTGTGCTG
CTGTGCAAGTTCCAATGGGATTGGAAGATCAGTTTCAGGGTCTTGTGGAC
CTTGTGCAGTTAACAGCTTATTATTTTCATGGTTCCCATGGTGAAAAAAA
TTGTCAC
back to top