FC910033

Overview
NameFC910033
Unique NameFC910033
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length782
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DNAJ_CAMLR (Chaperone protein dnaJ OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.749e-11
Identity = 37/87 (42.53%), Postives = 54/87 (62.07%), Query Frame = 3
Query:  525 DFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKA-PGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHTRAARGFNGF 782
            ++YEIL + ++   E ++K+YRK++LK HPD+N+    AEE FK V++A++ LSNDE R  YD  G +    Q       A GF GF
Sbjct:    4 NYYEILEISQTSDKETIKKAYRKMALKYHPDRNQGDKEAEEKFKLVNEAYEVLSNDEKRSIYDRYGKEGLKGQ-------AGGFGGF 83          
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DNAJ_BURXL (Chaperone protein dnaJ OS=Burkholderia xenovorans (strain LB400) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.749e-11
Identity = 36/90 (40.00%), Postives = 56/90 (62.22%), Query Frame = 3
Query:  522 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPG---AEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHTRAARGFNGF 782
            +D+YE+LGV ++ + ++++K+YRKL++K HPD+N  PG   AE  FK V +A++ LS+ + R  YD  G       P      A+GF GF
Sbjct:    4 RDYYEVLGVAKNASDDEIKKAYRKLAMKHHPDRN--PGNKDAEGHFKEVKEAYEMLSDSQKRAAYDQYG--HAGVDPNMGGAGAQGFGGF 89          
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DNAJ_BURPP (Chaperone protein dnaJ OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.749e-11
Identity = 36/90 (40.00%), Postives = 56/90 (62.22%), Query Frame = 3
Query:  522 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPG---AEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHTRAARGFNGF 782
            +D+YE+LGV ++ + ++++K+YRKL++K HPD+N  PG   AE  FK V +A++ LS+ + R  YD  G       P      A+GF GF
Sbjct:    4 RDYYEVLGVAKNASDDEIKKAYRKLAMKHHPDRN--PGNKDAEGHFKEVKEAYEMLSDSQKRAAYDQYG--HAGVDPNMGGAGAQGFGGF 89          
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DNAJ_BURP8 (Chaperone protein dnaJ OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.749e-11
Identity = 35/90 (38.89%), Postives = 56/90 (62.22%), Query Frame = 3
Query:  522 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPG---AEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHTRAARGFNGF 782
            +D+Y++LGV ++ + ++++K+YRKL++K HPD+N  PG   AEE FK   +A++ LS+ + R  YD  G       P      A+GF GF
Sbjct:    4 RDYYQVLGVAKNASDDEIKKAYRKLAMKHHPDRN--PGNKDAEEHFKEAKEAYEMLSDSQKRAAYDQYG--HAGVDPNMAGAGAQGFGGF 89          
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DNAJ_BURCM (Chaperone protein dnaJ OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.749e-11
Identity = 33/88 (37.50%), Postives = 54/88 (61.36%), Query Frame = 3
Query:  522 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKN-KAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHTRAARGFNGF 782
            +D+YE+LGV ++ + ++++K+YRKL++K HPD+N  +  AEE FK   +A++ LS+ + R  YD  G       P       +GF GF
Sbjct:    4 RDYYEVLGVAKNASDDEIKKAYRKLAMKYHPDRNPDSKDAEEHFKEAKEAYEMLSDGQKRAAYDQYG--HAGVDPNMGGAGGQGFGGF 89          
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DNAJ_BURA4 (Chaperone protein dnaJ OS=Burkholderia ambifaria (strain MC40-6) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.749e-11
Identity = 33/88 (37.50%), Postives = 54/88 (61.36%), Query Frame = 3
Query:  522 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKN-KAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHTRAARGFNGF 782
            +D+YE+LGV ++ + ++++K+YRKL++K HPD+N  +  AEE FK   +A++ LS+ + R  YD  G       P       +GF GF
Sbjct:    4 RDYYEVLGVAKNASDDEIKKAYRKLAMKYHPDRNPDSKDAEEHFKEAKEAYEMLSDGQKRAAYDQYG--HAGVDPNMGGAGGQGFGGF 89          
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DNAJ_BACTN (Chaperone protein dnaJ OS=Bacteroides thetaiotaomicron GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.749e-11
Identity = 32/69 (46.38%), Postives = 49/69 (71.01%), Query Frame = 3
Query:  522 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPG---AEEAFKAVSKAFQCLSNDESRKKYDITG 719
            +D+YE+L V ++ TVE+++K+YRK +++ HPDKN  PG   AEE FK  ++A+  LSN + R +YD  G
Sbjct:    5 RDYYEVLEVTKTATVEEIKKAYRKKAIQYHPDKN--PGDKEAEEKFKEAAEAYDVLSNPDKRSRYDQFG 71          
The following BLAST results are available for this feature:
BLAST of FC910033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 287
Match NameE-valueIdentityDescription
DNAJ_CAMLR7.749e-1142.53Chaperone protein dnaJ OS=Campylobacter lari (stra... [more]
DNAJ_BURXL7.749e-1140.00Chaperone protein dnaJ OS=Burkholderia xenovorans ... [more]
DNAJ_BURPP7.749e-1140.00Chaperone protein dnaJ OS=Burkholderia phytofirman... [more]
DNAJ_BURP87.749e-1138.89Chaperone protein dnaJ OS=Burkholderia phymatum (s... [more]
DNAJ_BURCM7.749e-1137.50Chaperone protein dnaJ OS=Burkholderia ambifaria (... [more]
DNAJ_BURA47.749e-1137.50Chaperone protein dnaJ OS=Burkholderia ambifaria (... [more]
DNAJ_BACTN7.749e-1146.38Chaperone protein dnaJ OS=Bacteroides thetaiotaomi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA15AG10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15AG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910033 ID=FC910033; Name=FC910033; organism=Citrus clementina; type=EST; length=782bp
CTTCTCCTCCTTACCCTCAACTTACGACACCACCCCCTGAATCCTTGAAC
CCCTCAAATTCAAATTCTTATGTCAGATCCATTATATTAACACTATTATG
ATTCGCAATCGGCAATAAATTAGGATTAGGGTTTGTGATATTTATATATA
TATTGTGTTATTTGTTCTTGTGTGGTTTTTCAATTTTCATCATGGATGGG
AATAAAGATGACGCCTTGAAATGTTTCAAAATCGGCAAAGAAGCGCTAGA
ATCAGGCGATCGAGCGCGTGCGATCAAATTTCTGTCCAAGGCTCGCCGCC
TCGATCCTTCTCTTCCGGTTGACGACATCATCTCATCCATCGAGTCCGAC
CCCAACACAAACCCTAACGGCCCGTCCGCAGAGCCCAATTCAAAGCCGTC
CGATCAATCGACGATCCGACACCGGGGCCCATCAACTGGCGCGTCTCCGT
CAGCTTCTTCTTCGACCTCTCCGGCGTACACCGAAGAGCAAATCGCGATC
GTGAGACAGATTAAGAAAACGAAAGATTTTTACGAAATCCTAGGGGTTGA
AAGATCTTGTACGGTCGAAGATGTACGGAAATCTTATAGAAAATTATCGC
TGAAGGTTCATCCCGATAAGAACAAAGCTCCAGGCGCCGAAGAAGCCTTT
AAAGCGGTATCAAAGGCGTTTCAGTGTTTGAGCAACGATGAGAGTCGGAA
AAAATATGATATTACTGGGTCAGATGAGCCCGTTTATCAGCCACGGACTC
ATACTCGGGCCGCCCGTGGGTTTAACGGGTTT
back to top