FC910033

Overview
NameFC910033
Unique NameFC910033
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length782
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC910033_ssr143 microsatellite FC910033_ssr143:143..152. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8349 contig Ccv1_Contig8349:67..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAN (Chaperone protein dnaJ OS=Staphylococcus aureus (strain N315) GN=dnaJ PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.155e-14
Identity = 37/86 (43.02%), Postives = 55/86 (63.95%), Query Frame = 3 
Query:  522 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHTRAARGFNG 779
            +D+YE+LG+ +  + ++++K+YRKLS K HPD NK  GA+E FK +S+A++ LS+D  R  YD  G D P           +GFNG
Sbjct:    4 RDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGP------QGFGGQGFNG 83
[Close]
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAM (Chaperone protein dnaJ OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=dnaJ PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.155e-14
Identity = 37/86 (43.02%), Postives = 55/86 (63.95%), Query Frame = 3 
Query:  522 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHTRAARGFNG 779
            +D+YE+LG+ +  + ++++K+YRKLS K HPD NK  GA+E FK +S+A++ LS+D  R  YD  G D P           +GFNG
Sbjct:    4 RDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGP------QGFGGQGFNG 83
[Close]
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAE (Chaperone protein dnaJ OS=Staphylococcus aureus (strain Newman) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.155e-14
Identity = 37/86 (43.02%), Postives = 55/86 (63.95%), Query Frame = 3 
Query:  522 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHTRAARGFNG 779
            +D+YE+LG+ +  + ++++K+YRKLS K HPD NK  GA+E FK +S+A++ LS+D  R  YD  G D P           +GFNG
Sbjct:    4 RDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGP------QGFGGQGFNG 83
[Close]
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAC (Chaperone protein dnaJ OS=Staphylococcus aureus (strain COL) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.155e-14
Identity = 37/86 (43.02%), Postives = 55/86 (63.95%), Query Frame = 3 
Query:  522 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHTRAARGFNG 779
            +D+YE+LG+ +  + ++++K+YRKLS K HPD NK  GA+E FK +S+A++ LS+D  R  YD  G D P           +GFNG
Sbjct:    4 RDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGP------QGFGGQGFNG 83
[Close]
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAB (Chaperone protein dnaJ OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.155e-14
Identity = 37/86 (43.02%), Postives = 55/86 (63.95%), Query Frame = 3 
Query:  522 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHTRAARGFNG 779
            +D+YE+LG+ +  + ++++K+YRKLS K HPD NK  GA+E FK +S+A++ LS+D  R  YD  G D P           +GFNG
Sbjct:    4 RDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGP------QGFGGQGFNG 83
[Close]
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DNAJ_STAA9 (Chaperone protein dnaJ OS=Staphylococcus aureus (strain JH9) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.155e-14
Identity = 37/86 (43.02%), Postives = 55/86 (63.95%), Query Frame = 3 
Query:  522 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHTRAARGFNG 779
            +D+YE+LG+ +  + ++++K+YRKLS K HPD NK  GA+E FK +S+A++ LS+D  R  YD  G D P           +GFNG
Sbjct:    4 RDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGP------QGFGGQGFNG 83
[Close]
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DNAJ_STAA8 (Chaperone protein dnaJ OS=Staphylococcus aureus (strain NCTC 8325) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.155e-14
Identity = 37/86 (43.02%), Postives = 55/86 (63.95%), Query Frame = 3 
Query:  522 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHTRAARGFNG 779
            +D+YE+LG+ +  + ++++K+YRKLS K HPD NK  GA+E FK +S+A++ LS+D  R  YD  G D P           +GFNG
Sbjct:    4 RDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGP------QGFGGQGFNG 83
[Close]
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DNAJ_STAA3 (Chaperone protein dnaJ OS=Staphylococcus aureus (strain USA300) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.155e-14
Identity = 37/86 (43.02%), Postives = 55/86 (63.95%), Query Frame = 3 
Query:  522 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHTRAARGFNG 779
            +D+YE+LG+ +  + ++++K+YRKLS K HPD NK  GA+E FK +S+A++ LS+D  R  YD  G D P           +GFNG
Sbjct:    4 RDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGP------QGFGGQGFNG 83
[Close]
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DNAJ_STAA2 (Chaperone protein dnaJ OS=Staphylococcus aureus (strain JH1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.155e-14
Identity = 37/86 (43.02%), Postives = 55/86 (63.95%), Query Frame = 3 
Query:  522 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHTRAARGFNG 779
            +D+YE+LG+ +  + ++++K+YRKLS K HPD NK  GA+E FK +S+A++ LS+D  R  YD  G D P           +GFNG
Sbjct:    4 RDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGP------QGFGGQGFNG 83
[Close]
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DNAJ_STAA1 (Chaperone protein dnaJ OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.155e-14
Identity = 37/86 (43.02%), Postives = 55/86 (63.95%), Query Frame = 3 
Query:  522 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHTRAARGFNG 779
            +D+YE+LG+ +  + ++++K+YRKLS K HPD NK  GA+E FK +S+A++ LS+D  R  YD  G D P           +GFNG
Sbjct:    4 RDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGP------QGFGGQGFNG 83
The following BLAST results are available for this feature:
BLAST of FC910033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 287
Match NameE-valueIdentityDescription
DNAJ_STAAN1.155e-1443.02Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]
DNAJ_STAAM1.155e-1443.02Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]
DNAJ_STAAE1.155e-1443.02Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]
DNAJ_STAAC1.155e-1443.02Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]
DNAJ_STAAB1.155e-1443.02Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]
DNAJ_STAA91.155e-1443.02Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]
DNAJ_STAA81.155e-1443.02Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]
DNAJ_STAA31.155e-1443.02Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]
DNAJ_STAA21.155e-1443.02Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]
DNAJ_STAA11.155e-1443.02Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA15AG10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15AG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910033 ID=FC910033; Name=FC910033; organism=Citrus clementina; type=EST; length=782bp
CTTCTCCTCCTTACCCTCAACTTACGACACCACCCCCTGAATCCTTGAAC
CCCTCAAATTCAAATTCTTATGTCAGATCCATTATATTAACACTATTATG
ATTCGCAATCGGCAATAAATTAGGATTAGGGTTTGTGATATTTATATATA
TATTGTGTTATTTGTTCTTGTGTGGTTTTTCAATTTTCATCATGGATGGG
AATAAAGATGACGCCTTGAAATGTTTCAAAATCGGCAAAGAAGCGCTAGA
ATCAGGCGATCGAGCGCGTGCGATCAAATTTCTGTCCAAGGCTCGCCGCC
TCGATCCTTCTCTTCCGGTTGACGACATCATCTCATCCATCGAGTCCGAC
CCCAACACAAACCCTAACGGCCCGTCCGCAGAGCCCAATTCAAAGCCGTC
CGATCAATCGACGATCCGACACCGGGGCCCATCAACTGGCGCGTCTCCGT
CAGCTTCTTCTTCGACCTCTCCGGCGTACACCGAAGAGCAAATCGCGATC
GTGAGACAGATTAAGAAAACGAAAGATTTTTACGAAATCCTAGGGGTTGA
AAGATCTTGTACGGTCGAAGATGTACGGAAATCTTATAGAAAATTATCGC
TGAAGGTTCATCCCGATAAGAACAAAGCTCCAGGCGCCGAAGAAGCCTTT
AAAGCGGTATCAAAGGCGTTTCAGTGTTTGAGCAACGATGAGAGTCGGAA
AAAATATGATATTACTGGGTCAGATGAGCCCGTTTATCAGCCACGGACTC
ATACTCGGGCCGCCCGTGGGTTTAACGGGTTT
back to top