FC910033

Overview
NameFC910033
Unique NameFC910033
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length782
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC910033_ssr143 microsatellite FC910033_ssr143:143..152. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8349 contig Ccv1_Contig8349:67..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DNAJ_GEOSW (Chaperone protein dnaJ OS=Geobacillus sp. (strain WCH70) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.155e-14
Identity = 39/87 (44.83%), Postives = 55/87 (63.22%), Query Frame = 3
Query:  522 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHTRAARGFNGF 782
            +D+YEILGV ++ T E+++K+YRKLS K HPD NK P A E FK + +A++ LS+D+ R  YD  G  +P           +GF GF
Sbjct:    4 RDYYEILGVSKNATKEEIKKAYRKLSKKYHPDINKEPDAAEKFKEIKEAYEVLSDDQKRAHYDQFGHADP----------NQGFGGF 80          
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DNAJ_BACTR (Chaperone protein dnaJ OS=Bacillus thermoglucosidasius GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.155e-14
Identity = 39/87 (44.83%), Postives = 55/87 (63.22%), Query Frame = 3
Query:  522 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHTRAARGFNGF 782
            +D+YEILGV ++ T E+++K+YRKLS K HPD NK P A E FK + +A++ LS+D+ R  YD  G  +P           +GF GF
Sbjct:    4 RDYYEILGVSKNATKEEIKKAYRKLSKKYHPDINKEPDAAEKFKEIKEAYEVLSDDQKRAHYDQFGHADP----------NQGFGGF 80          
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DNAJ_BACA2 (Chaperone protein dnaJ OS=Bacillus amyloliquefaciens (strain FZB42) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.155e-14
Identity = 34/70 (48.57%), Postives = 52/70 (74.29%), Query Frame = 3
Query:  522 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEP 731
            +D+YE+LGV +S + ++++K+YRKLS K HPD NK  GA+E FK V +A++ LS+D+ R +YD  G  +P
Sbjct:    4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKESGADEKFKEVKEAYEALSDDQKRAQYDQFGHTDP 73          
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DNAJ_MYCGA (Chaperone protein dnaJ OS=Mycoplasma gallisepticum GN=dnaJ PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.509e-14
Identity = 35/68 (51.47%), Postives = 52/68 (76.47%), Query Frame = 3
Query:  522 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSD 725
            +D+YEIL V RS T +D++K++RKL++K HPD+NK   AEE FK V++A++ LS++E RK YD  G +
Sbjct:    5 RDYYEILEVSRSATQQDIKKAFRKLAMKYHPDRNKDSDAEEKFKEVNEAYEVLSDEEKRKLYDTYGHE 72          
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DNAJ_STAES (Chaperone protein dnaJ OS=Staphylococcus epidermidis (strain ATCC 12228) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.971e-14
Identity = 34/70 (48.57%), Postives = 51/70 (72.86%), Query Frame = 3
Query:  522 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEP 731
            +D+YE+LGV +S + ++++K+YRKLS K HPD NK  GA+E FK +S+A++ LS++  R  YD  G D P
Sbjct:    4 RDYYEVLGVNKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDENKRANYDQFGHDGP 73          
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DNAJ_THEEB (Chaperone protein dnaJ OS=Thermosynechococcus elongatus (strain BP-1) GN=dnaJ PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.574e-14
Identity = 34/66 (51.52%), Postives = 50/66 (75.76%), Query Frame = 3
Query:  522 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITG 719
            +DFYEILGV RS   E+++++YR+L+ K HPD NK PGAEE FK +++A++ LS+ ++R  YD  G
Sbjct:    3 RDFYEILGVSRSADAEELKRAYRRLARKYHPDVNKEPGAEEKFKEINRAYEVLSDPQARANYDRFG 68          
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DNAJ_SYNJA (Chaperone protein dnaJ OS=Synechococcus sp. (strain JA-3-3Ab) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.574e-14
Identity = 33/66 (50.00%), Postives = 51/66 (77.27%), Query Frame = 3
Query:  522 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITG 719
            +D+YEILGV R  + E+++++YR+L+ K HPD NK PGAE+ FK +++A++ LS+DE R +YD  G
Sbjct:    3 RDYYEILGVSRDSSKEEIKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDDELRARYDRFG 68          
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DNAJ_STAEQ (Chaperone protein dnaJ OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.574e-14
Identity = 34/70 (48.57%), Postives = 51/70 (72.86%), Query Frame = 3
Query:  522 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEP 731
            +D+YE+LGV +S + ++++K+YRKLS K HPD NK  GA+E FK +S+A++ LS++  R  YD  G D P
Sbjct:    4 RDYYEVLGVNKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDENKRVNYDQFGHDGP 73          
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DNAJ_BACP2 (Chaperone protein dnaJ OS=Bacillus pumilus (strain SAFR-032) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.574e-14
Identity = 33/70 (47.14%), Postives = 52/70 (74.29%), Query Frame = 3
Query:  522 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEP 731
            +D+YE+LGV +S + ++++K+YRKLS K HPD NK  G++E FK V +A++ LS+D+ R +YD  G  +P
Sbjct:    4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEAGSDEKFKEVKEAYETLSDDQKRSQYDQFGHTDP 73          
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DNAJ_BACHD (Chaperone protein dnaJ OS=Bacillus halodurans GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.574e-14
Identity = 34/70 (48.57%), Postives = 51/70 (72.86%), Query Frame = 3
Query:  522 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEP 731
            +D+YE+LGV+R+ + ++V+K+YRKL+ K HPD NKAP AE+ FK V +AF  LS+ + +  YD  G  +P
Sbjct:    4 RDYYEVLGVDRNASADEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAFDTLSDPQKKAHYDQFGHTDP 73          
The following BLAST results are available for this feature:
BLAST of FC910033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 287
Match NameE-valueIdentityDescription
DNAJ_GEOSW1.155e-1444.83Chaperone protein dnaJ OS=Geobacillus sp. (strain ... [more]
DNAJ_BACTR1.155e-1444.83Chaperone protein dnaJ OS=Bacillus thermoglucosida... [more]
DNAJ_BACA21.155e-1448.57Chaperone protein dnaJ OS=Bacillus amyloliquefacie... [more]
DNAJ_MYCGA1.509e-1451.47Chaperone protein dnaJ OS=Mycoplasma gallisepticum... [more]
DNAJ_STAES1.971e-1448.57Chaperone protein dnaJ OS=Staphylococcus epidermid... [more]
DNAJ_THEEB2.574e-1451.52Chaperone protein dnaJ OS=Thermosynechococcus elon... [more]
DNAJ_SYNJA2.574e-1450.00Chaperone protein dnaJ OS=Synechococcus sp. (strai... [more]
DNAJ_STAEQ2.574e-1448.57Chaperone protein dnaJ OS=Staphylococcus epidermid... [more]
DNAJ_BACP22.574e-1447.14Chaperone protein dnaJ OS=Bacillus pumilus (strain... [more]
DNAJ_BACHD2.574e-1448.57Chaperone protein dnaJ OS=Bacillus halodurans GN=d... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA15AG10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15AG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910033 ID=FC910033; Name=FC910033; organism=Citrus clementina; type=EST; length=782bp
CTTCTCCTCCTTACCCTCAACTTACGACACCACCCCCTGAATCCTTGAAC
CCCTCAAATTCAAATTCTTATGTCAGATCCATTATATTAACACTATTATG
ATTCGCAATCGGCAATAAATTAGGATTAGGGTTTGTGATATTTATATATA
TATTGTGTTATTTGTTCTTGTGTGGTTTTTCAATTTTCATCATGGATGGG
AATAAAGATGACGCCTTGAAATGTTTCAAAATCGGCAAAGAAGCGCTAGA
ATCAGGCGATCGAGCGCGTGCGATCAAATTTCTGTCCAAGGCTCGCCGCC
TCGATCCTTCTCTTCCGGTTGACGACATCATCTCATCCATCGAGTCCGAC
CCCAACACAAACCCTAACGGCCCGTCCGCAGAGCCCAATTCAAAGCCGTC
CGATCAATCGACGATCCGACACCGGGGCCCATCAACTGGCGCGTCTCCGT
CAGCTTCTTCTTCGACCTCTCCGGCGTACACCGAAGAGCAAATCGCGATC
GTGAGACAGATTAAGAAAACGAAAGATTTTTACGAAATCCTAGGGGTTGA
AAGATCTTGTACGGTCGAAGATGTACGGAAATCTTATAGAAAATTATCGC
TGAAGGTTCATCCCGATAAGAACAAAGCTCCAGGCGCCGAAGAAGCCTTT
AAAGCGGTATCAAAGGCGTTTCAGTGTTTGAGCAACGATGAGAGTCGGAA
AAAATATGATATTACTGGGTCAGATGAGCCCGTTTATCAGCCACGGACTC
ATACTCGGGCCGCCCGTGGGTTTAACGGGTTT
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