FC910033

Overview
NameFC910033
Unique NameFC910033
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length782
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC910033_ssr143 microsatellite FC910033_ssr143:143..152. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8349 contig Ccv1_Contig8349:67..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DNAJ_NOSP7 (Chaperone protein dnaJ OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.846e-13
Identity = 32/68 (47.06%), Postives = 50/68 (73.53%), Query Frame = 3
Query:  522 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSD 725
            +D+YEILGV R    E+++++YR+L+ K HPD NK PGAE+ FK +++A++ LS  E+R +YD  G +
Sbjct:    3 RDYYEILGVSRDTDKEELKQAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSEPETRARYDRFGPE 70          
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DNAJ_CHLCH (Chaperone protein dnaJ OS=Chlorobium chlorochromatii (strain CaD3) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.846e-13
Identity = 37/69 (53.62%), Postives = 52/69 (75.36%), Query Frame = 3
Query:  522 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPG---AEEAFKAVSKAFQCLSNDESRKKYDITG 719
            KD+YE LGV RS   +D++K+YRKL+++ HPDKN  PG   AEE FK V++A++ LSND+ R++YD  G
Sbjct:    3 KDYYETLGVTRSSNKDDIKKAYRKLAVQYHPDKN--PGNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFG 69          
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DNAJ_ACAM1 (Chaperone protein dnaJ OS=Acaryochloris marina (strain MBIC 11017) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.846e-13
Identity = 32/66 (48.48%), Postives = 50/66 (75.76%), Query Frame = 3
Query:  522 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITG 719
            +D+Y+ILGV RS   +++++SYR+L+ K HPD NK PGAE+ FK ++KA++ LS+ + R +YD  G
Sbjct:    3 RDYYDILGVSRSADPDELKRSYRRLARKYHPDVNKEPGAEDKFKEINKAYETLSDPQMRGRYDQFG 68          
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DNJB9_MOUSE (DnaJ homolog subfamily B member 9 OS=Mus musculus GN=Dnajb9 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.716e-13
Identity = 32/76 (42.11%), Postives = 53/76 (69.74%), Query Frame = 3
Query:  492 IAIVRQIKKTKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITG 719
            + I   I  +K +Y+ILGV +S +   ++K++ KL++K HPDKNK+P AE  F+ +++A++ LS+  SRK+YD  G
Sbjct:   15 LMITELILASKSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANSRKEYDTIG 90          
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DNAJ_PELLD (Chaperone protein dnaJ OS=Pelodictyon luteolum (strain DSM 273) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.716e-13
Identity = 34/67 (50.75%), Postives = 51/67 (76.12%), Query Frame = 3
Query:  522 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKN-KAPGAEEAFKAVSKAFQCLSNDESRKKYDITG 719
            +D+YE+LGV RS   ++++K+YRKL+LK HPDKN     AE+ FK V++A++ LSND+ R++YD  G
Sbjct:    3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKDAEDHFKEVNEAYEVLSNDDKRRRYDQFG 69          
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DNAJ_DEIRA (Chaperone protein dnaJ OS=Deinococcus radiodurans GN=dnaJ PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.716e-13
Identity = 33/66 (50.00%), Postives = 48/66 (72.73%), Query Frame = 3
Query:  525 DFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGS 722
            D+YE+LGV R+ + ++++ +YRKL+LK+HPD+NK  GA E F  VS+A+  LS+ E R  YD  GS
Sbjct:    2 DYYELLGVSRTASADEIKSAYRKLALKLHPDRNKEEGAAEKFAQVSEAYSVLSDTEKRAHYDRFGS 67          
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DNAJ_CHLP8 (Chaperone protein dnaJ OS=Chlorobaculum parvum (strain NCIB 8327) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.716e-13
Identity = 35/67 (52.24%), Postives = 50/67 (74.63%), Query Frame = 3
Query:  522 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKN-KAPGAEEAFKAVSKAFQCLSNDESRKKYDITG 719
            +D+YEILGV RS   ++++K+YRKL+LK HPDKN     AEE FK  ++A++ LSND+ R++YD  G
Sbjct:    3 RDYYEILGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEKFKEANEAYEVLSNDDKRRRYDQFG 69          
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DNAJ_BACSK (Chaperone protein dnaJ OS=Bacillus clausii (strain KSM-K16) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.716e-13
Identity = 33/70 (47.14%), Postives = 50/70 (71.43%), Query Frame = 3
Query:  522 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEP 731
            +D+YE+LGV+R+ +VE+V+K+YRKL+ K HPD NK   AE  FK V +A+  LS+ + + +YD  G  +P
Sbjct:    4 RDYYEVLGVDRNASVEEVKKAYRKLARKYHPDVNKEEDAEAKFKEVKEAYDTLSDPQKKARYDQFGHADP 73          
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DJC16_MOUSE (DnaJ homolog subfamily C member 16 OS=Mus musculus GN=Dnajc16 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.716e-13
Identity = 39/99 (39.39%), Postives = 59/99 (59.60%), Query Frame = 3
Query:  492 IAIVRQIKKTKDF--YEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITG--SDEPVYQPRTHTRAARGFN 776
            + ++ Q     DF  Y +LGV R+ +  D++K+Y+KL+ + HPDKNK PGAE+ F  +SKA++ LSN+E R  YD  G   +   YQ +      R F+
Sbjct:   16 LVLILQSLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGDAGENQGYQKQQREHRFRHFH 114          
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DNJB5_MOUSE (DnaJ homolog subfamily B member 5 OS=Mus musculus GN=Dnajb5 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.854e-13
Identity = 31/68 (45.59%), Postives = 48/68 (70.59%), Query Frame = 3
Query:  522 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSD 725
            KD+Y+ILG+      ++++K+YRK++LK HPDKNK P AEE FK +++A+  LS+ + R  YD  G +
Sbjct:    3 KDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKKRSLYDQYGEE 70          
The following BLAST results are available for this feature:
BLAST of FC910033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 287
Match NameE-valueIdentityDescription
DNAJ_NOSP72.846e-1347.06Chaperone protein dnaJ OS=Nostoc punctiforme (stra... [more]
DNAJ_CHLCH2.846e-1353.62Chaperone protein dnaJ OS=Chlorobium chlorochromat... [more]
DNAJ_ACAM12.846e-1348.48Chaperone protein dnaJ OS=Acaryochloris marina (st... [more]
DNJB9_MOUSE3.716e-1342.11DnaJ homolog subfamily B member 9 OS=Mus musculus ... [more]
DNAJ_PELLD3.716e-1350.75Chaperone protein dnaJ OS=Pelodictyon luteolum (st... [more]
DNAJ_DEIRA3.716e-1350.00Chaperone protein dnaJ OS=Deinococcus radiodurans ... [more]
DNAJ_CHLP83.716e-1352.24Chaperone protein dnaJ OS=Chlorobaculum parvum (st... [more]
DNAJ_BACSK3.716e-1347.14Chaperone protein dnaJ OS=Bacillus clausii (strain... [more]
DJC16_MOUSE3.716e-1339.39DnaJ homolog subfamily C member 16 OS=Mus musculus... [more]
DNJB5_MOUSE4.854e-1345.59DnaJ homolog subfamily B member 5 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA15AG10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15AG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910033 ID=FC910033; Name=FC910033; organism=Citrus clementina; type=EST; length=782bp
CTTCTCCTCCTTACCCTCAACTTACGACACCACCCCCTGAATCCTTGAAC
CCCTCAAATTCAAATTCTTATGTCAGATCCATTATATTAACACTATTATG
ATTCGCAATCGGCAATAAATTAGGATTAGGGTTTGTGATATTTATATATA
TATTGTGTTATTTGTTCTTGTGTGGTTTTTCAATTTTCATCATGGATGGG
AATAAAGATGACGCCTTGAAATGTTTCAAAATCGGCAAAGAAGCGCTAGA
ATCAGGCGATCGAGCGCGTGCGATCAAATTTCTGTCCAAGGCTCGCCGCC
TCGATCCTTCTCTTCCGGTTGACGACATCATCTCATCCATCGAGTCCGAC
CCCAACACAAACCCTAACGGCCCGTCCGCAGAGCCCAATTCAAAGCCGTC
CGATCAATCGACGATCCGACACCGGGGCCCATCAACTGGCGCGTCTCCGT
CAGCTTCTTCTTCGACCTCTCCGGCGTACACCGAAGAGCAAATCGCGATC
GTGAGACAGATTAAGAAAACGAAAGATTTTTACGAAATCCTAGGGGTTGA
AAGATCTTGTACGGTCGAAGATGTACGGAAATCTTATAGAAAATTATCGC
TGAAGGTTCATCCCGATAAGAACAAAGCTCCAGGCGCCGAAGAAGCCTTT
AAAGCGGTATCAAAGGCGTTTCAGTGTTTGAGCAACGATGAGAGTCGGAA
AAAATATGATATTACTGGGTCAGATGAGCCCGTTTATCAGCCACGGACTC
ATACTCGGGCCGCCCGTGGGTTTAACGGGTTT
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