FC910038

Overview
NameFC910038
Unique NameFC910038
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC910038 vs. ExPASy Swiss-Prot
Match: NGA1_ARATH (B3 domain-containing transcription factor NGA1 OS=Arabidopsis thaliana GN=NGA1 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.754e-19
Identity = 45/62 (72.58%), Postives = 51/62 (82.26%), Query Frame = 3
Query:  657 RVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFR 842
            R +  R+ +F+K VTPSDVGKLNRLVIPKQHAE+ FPL S S  KGLLLNFED+TGK WRFR
Sbjct:   26 REVADREHMFDKVVTPSDVGKLNRLVIPKQHAERFFPLDSSSNEKGLLLNFEDLTGKSWRFR 87          
BLAST of FC910038 vs. ExPASy Swiss-Prot
Match: Y4814_ORYSJ (B3 domain-containing protein Os04g0581400 OS=Oryza sativa subsp. japonica GN=Os04g0581400 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.909e-19
Identity = 44/65 (67.69%), Postives = 53/65 (81.54%), Query Frame = 3
Query:  648 GSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFR 842
            G D  +  ++ +F+K VTPSDVGKLNRLVIPKQHAEK+FPL S +  KGLLL+FED TGK+WRFR
Sbjct:   98 GEDVEVIEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSAANEKGLLLSFEDRTGKLWRFR 162          
BLAST of FC910038 vs. ExPASy Swiss-Prot
Match: Y2641_ORYSJ (B3 domain-containing protein Os02g0764100 OS=Oryza sativa subsp. japonica GN=Os02g0764100 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.137e-18
Identity = 45/59 (76.27%), Postives = 52/59 (88.14%), Query Frame = 3
Query:  669 ARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPL-QSGSTSKGLLLNFEDVTGKVWRFR 842
            AR+ LFEKAVTPSDVGKLNRL++PKQHAEKHFPL ++ S + G+LLNFED  GKVWRFR
Sbjct:   12 AREPLFEKAVTPSDVGKLNRLLVPKQHAEKHFPLRRTSSDASGVLLNFEDGEGKVWRFR 70          
BLAST of FC910038 vs. ExPASy Swiss-Prot
Match: Y3209_ORYSJ (B3 domain-containing protein Os03g0120900 OS=Oryza sativa subsp. japonica GN=Os03g0120900 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.485e-18
Identity = 45/73 (61.64%), Postives = 53/73 (72.60%), Query Frame = 3
Query:  624 GDGVATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFR 842
            G  V  + G       ++ +F+K VTPSDVGKLNRLVIPKQHAEK+FPL + S  KGLLL+FED TGK WRFR
Sbjct:   17 GGEVQESGGRSLAAVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDAASNEKGLLLSFEDRTGKPWRFR 89          
BLAST of FC910038 vs. ExPASy Swiss-Prot
Match: Y2835_ORYSJ (B3 domain-containing protein Os02g0683500 OS=Oryza sativa subsp. japonica GN=Os02g0683500 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.321e-18
Identity = 43/73 (58.90%), Postives = 53/73 (72.60%), Query Frame = 3
Query:  624 GDGVATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFR 842
            G G     G +  +  ++ +F+K VTPSDVGKLNRLVIPKQ+AEK+FPL + +  KGLLLNFED  GK WRFR
Sbjct:   76 GSGGGGGGGGEAEVVEKEHMFDKVVTPSDVGKLNRLVIPKQYAEKYFPLDAAANEKGLLLNFEDRAGKPWRFR 148          
BLAST of FC910038 vs. ExPASy Swiss-Prot
Match: NGA3_ARATH (B3 domain-containing transcription factor NGA3 OS=Arabidopsis thaliana GN=NGA3 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.150e-17
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = 3
Query:  672 RDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFR 842
            ++ +F+K VTPSDVGKLNRLVIPKQHAE++FPL S +   G LLNF+D  GK+WRFR
Sbjct:   52 KEHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLDSSNNQNGTLLNFQDRNGKMWRFR 108          
BLAST of FC910038 vs. ExPASy Swiss-Prot
Match: NGA2_ARATH (B3 domain-containing transcription factor NGA2 OS=Arabidopsis thaliana GN=NGA2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.390e-16
Identity = 41/60 (68.33%), Postives = 50/60 (83.33%), Query Frame = 3
Query:  672 RDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGST---SKGLLLNFEDVTGKVWRFR 842
            R+ +F+K VTPSDVGKLNRLVIPKQHAE++FPL + +T   +KGLLLNFED +G  WRFR
Sbjct:   19 REHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLDNSTTNDSNKGLLLNFEDRSGNSWRFR 78          
BLAST of FC910038 vs. ExPASy Swiss-Prot
Match: Y3158_ARATH (B3 domain-containing protein At3g11580 OS=Arabidopsis thaliana GN=ARF32 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.371e-16
Identity = 42/75 (56.00%), Postives = 54/75 (72.00%), Query Frame = 3
Query:  651 SDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQS-----------GSTSKGLLLNFEDVTGKVWRFR 842
            +D  +  R+ LFEK++TPSDVGKLNRLVIPKQHAEK+FPL +            +T KG+LL+FED +GK W+FR
Sbjct:   18 NDVAIAQRESLFEKSLTPSDVGKLNRLVIPKQHAEKYFPLNNNNNNGGSGDDVATTEKGMLLSFEDESGKCWKFR 92          
BLAST of FC910038 vs. ExPASy Swiss-Prot
Match: Y5625_ARATH (B3 domain-containing protein At5g06250 OS=Arabidopsis thaliana GN=At5g06250 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.011e-16
Identity = 41/67 (61.19%), Postives = 51/67 (76.12%), Query Frame = 3
Query:  672 RDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPL----------QSGSTSKGLLLNFEDVTGKVWRFR 842
            ++ LFEK++TPSDVGKLNRLVIPKQHAEK+FPL           + S+ KG+LL+FED +GK WRFR
Sbjct:   42 KESLFEKSLTPSDVGKLNRLVIPKQHAEKYFPLNAVLVSSAAADTSSSEKGMLLSFEDESGKSWRFR 108          
BLAST of FC910038 vs. ExPASy Swiss-Prot
Match: Y2608_ARATH (B3 domain-containing protein At2g36080 OS=Arabidopsis thaliana GN=ARF31 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.007e-15
Identity = 41/64 (64.06%), Postives = 50/64 (78.12%), Query Frame = 3
Query:  660 VLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSG---STSKGLLLNFEDVTGKVWRFR 842
            V++ ++ LFEK +TPSDVGKLNRLVIPKQHAE++FPL +    +  KGLLL FED  GK WRFR
Sbjct:   30 VVEEKEALFEKPLTPSDVGKLNRLVIPKQHAERYFPLAAAAADAVEKGLLLCFEDEEGKPWRFR 93          
The following BLAST results are available for this feature:
BLAST of FC910038 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
NGA1_ARATH1.754e-1972.58B3 domain-containing transcription factor NGA1 OS=... [more]
Y4814_ORYSJ3.909e-1967.69B3 domain-containing protein Os04g0581400 OS=Oryza... [more]
Y2641_ORYSJ1.137e-1876.27B3 domain-containing protein Os02g0764100 OS=Oryza... [more]
Y3209_ORYSJ1.485e-1861.64B3 domain-containing protein Os03g0120900 OS=Oryza... [more]
Y2835_ORYSJ4.321e-1858.90B3 domain-containing protein Os02g0683500 OS=Oryza... [more]
NGA3_ARATH8.150e-1766.67B3 domain-containing transcription factor NGA3 OS=... [more]
NGA2_ARATH1.390e-1668.33B3 domain-containing transcription factor NGA2 OS=... [more]
Y3158_ARATH2.371e-1656.00B3 domain-containing protein At3g11580 OS=Arabidop... [more]
Y5625_ARATH9.011e-1661.19B3 domain-containing protein At5g06250 OS=Arabidop... [more]
Y2608_ARATH2.007e-1564.06B3 domain-containing protein At2g36080 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA22CB02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22CB02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910038 ID=FC910038; Name=FC910038; organism=Citrus clementina; type=EST; length=844bp
ACACAATTCAGCATCTCTCTCTTTCTTTCTTGTACCAGAACCTCTTGTAG
ACACACATAACACACATGAAAAGAGAAGAAATGGACGGAAGTTGCATGGA
CGAAAGCACGACAACTGATTCAGCATCAACATCCCCGCCAATAACTTTCC
CTGCGAGCATCCCGCCGACCAAGTCGCCGGAGAGTCTTTGCCGAGTCGGC
AGCGGAGCCTCCAGCGTGATTCTCGACTCGGAAGCCGGCGTGGAGGCCGA
GTCGAGGAAGCTCCCGTCTTCCAAATACAAAGGGGTGGTCCCACAGCCGA
ATGGGAGGTGGGGCGCCCAGATATACGAGAAGCACCAAAGGGTCTGGCTC
GGCACCTTCAACGAGGAAGAGGAAGCTGCCAGGGCCTACGATATCGCTGC
GCAGCGTTTCCGCGGACGCGATGCCGTCACAAACTTCAAGCAAATGTCTT
GTGCTGGAACGTCCTCCGACGAGGGTGATATCGAAATGGCGTTCTTGAGC
TCCCACTCCAAGTCCGAGATCGTCGATATGCTGAGGAAGCACACTTACAA
CGACGAGCTCGAGCAGAGCAAAAGAAACTACGGCCTCGATGCCAACGGCA
AGCGTGTAATCAAACACGGGGAAGGTGATGGTGTTGCCACTGCCTTCGGT
TCGGACCGGGTCCTTAAAGCGCGTGACCAGCTTTTTGAAAAGGCCGTTAC
CCCGAGTGACGTGGGGAAGCTGAACCGGCTCGTGATACCCAAGCAGCACG
CGGAGAAGCACTTCCCTTTACAGAGCGGAAGCACTTCCAAGGGACTGCTC
TTGAACTTTGAGGATGTCACCGGCAAAGTTTGGAGGTTTAGGTA
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