FC910047

Overview
NameFC910047
Unique NameFC910047
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length882
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_STRE4 (Arginyl-tRNA synthetase OS=Streptococcus equi subsp. equi (strain 4047) GN=argS PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.815e-20
Identity = 68/224 (30.36%), Postives = 111/224 (49.55%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            HV+FG+V    G  +STRKG VI L  ++ +    +     + E K  ++ + EA A  +G+ AI   D      NGY+FD+E M SFEG+TGPY+QYAHAR+ S+ RK+    +   +  +SL    E  E+++ +  +P +        EP  +  +   ++++ +  Y             + +  D PE+   L   Y +A IVL   ++LLG+     M
Sbjct:  359 HVAFGLVTKG-GAKLSTRKGNVILLEPTVAEA---ISRAANQIEAKNPKLANKEAVAHAVGVGAIKFYDLKTDRMNGYDFDLEAMVSFEGETGPYVQYAHARIQSILRKASF--TPATDTSYSL-NDPESWEIIKLIQDFPRIIKRAFDNFEPSIMAKFAIHLAQSFNKYY-----------AHTRILEDDPERDNRLALCYATA-IVLKEALRLLGVEAPNEM 563          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_SHEPW (Arginyl-tRNA synthetase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=argS PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.815e-20
Identity = 66/224 (29.46%), Postives = 113/224 (50.45%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H+ FG +    G+   TR G V+ L D L +      ++++       + +  E  A ++GI+++   D S    + Y F  E+M SFEG+T PYL YA+ R+  + ++++  D +L++A   L   KE  +L   LAQ+ +V    +   +P  +  YLF+++ A SS Y+A            V+ AD+  +K + + L +     L  G+ LLGL  +ERM
Sbjct:  372 HMGFGTMNGEDGRPFKTRSGGVVKLIDLLKEADTRALELVRSKNPDMDEAELAEI-ARVVGIASVKYADLSKNRTSDYIFSFEQMLSFEGNTAPYLLYAYTRVAGIFKRAQ--DVDLSDAKIVLEHEKEK-DLGTKLAQFGEVMNRVVNKGQPHALCAYLFELAGAFSSFYEA----------CPVLAADTEAQKKSRLLLAQLTAKTLKQGLNLLGLETLERM 581          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_SHEB5 (Arginyl-tRNA synthetase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=argS PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.815e-20
Identity = 74/230 (32.17%), Postives = 116/230 (50.43%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVH-NFMHDVMKKNEDKYKQVQDPEAT----ADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSM-KRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H+ FG +    G+   TR G V+ L D L++ +   +  V  KN D        EAT    A ++GISA+   D S    + Y F  E+M SFEG+T PYL YA+ R+  + KR ++LD   L+ A   L   KE  +L   LAQ+ ++ +  +   +P  +  YL++++ A SS Y+A            V+ AD+  +K + + L +     L  G+ LLG+  +ERM
Sbjct:  372 HLGFGTMNGEDGRPFKTRSGGVVKLVDLLEEANVRALELVRSKNPDM------DEATLTEIARVVGISAVKYADLSKNRTSDYIFSFEQMLSFEGNTAPYLLYAYTRVAGIFKRVTDLD---LSQAKIVLEHEKEK-DLGNKLAQFGEILSRVVDKGQPHVLCAYLYELAGAFSSFYEA----------CPVLAADNDAQKNSRLLLAQLTARTLQKGLNLLGIETLERM 581          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_PSESM (Arginyl-tRNA synthetase OS=Pseudomonas syringae pv. tomato GN=argS PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.815e-20
Identity = 67/226 (29.65%), Postives = 112/226 (49.56%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPE--ATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H+ FG +    G+   TR G  + L D LD+     + ++K   +K  QV + E  + A  +GISA+   D S   A+ Y+F+ ++M SFEG+T PYL YA+ R+  + RK  L     A+    ++ A +  EL   LAQ+ +   N  +   P  +  YL+ ++   SS Y+             ++ A++P+++ + + L       L  G+ LLGL  +ERM
Sbjct:  368 HMGFGTMNGADGRPFKTRDGGTVKLIDLLDEAQERAYTLVK---EKNPQVAEAELRSIAKAVGISAVKYADLSKHRASDYSFNFDQMLSFEGNTAPYLLYAYTRVAGVFRK--LGTPFDASKGHIVLEAPQEQELAARLAQFNETLNNVAEKGTPHVLCAYLYDLAGLFSSFYE----------NCPILGAENPDQQQSRLRLAALTGRTLKQGLDLLGLETLERM 578          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_ECO27 (Arginyl-tRNA synthetase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=argS PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.815e-20
Identity = 67/225 (29.78%), Postives = 109/225 (48.44%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDD-VHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H  FGM+    G+   TR G  + LAD LD+ +      V +KN D      + E  A+ +GI A+   D S      Y FD + M +FEG+T PY+QYA+ R+ S+ RK+E+++ +LA A   +   +E  +L   L Q+ +  T   +   P  +  YL+ ++   S  Y+             ++ A+S E + + + L +     L  G+  LG+  VERM
Sbjct:  366 HHMFGMMLGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKNPDM--PADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEINEEQLAAAPVIIREDREA-QLAARLLQFEETLTVVAREGTPHVMCAYLYDLAGLFSGFYE----------HCPILSAESEEVRNSRLKLAQLTAKTLKLGLDTLGIETVERM 577          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR1_BACCZ (Arginyl-tRNA synthetase 1 OS=Bacillus cereus (strain ZK / E33L) GN=argS1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.815e-20
Identity = 68/226 (30.09%), Postives = 111/226 (49.12%), Query Frame = 2
Query:   11 HVSFGMV-KDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKN-EDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            HV FG + KD  G+ MSTRKG VI L + L++      ++ K+N E+K   ++  E  A  +G  A++  D   +  +   F +E M  FEG+TGPY+QY HAR CS+ RK  +   E     F+L        +V+ L ++P+V        EP  +  Y+  ++++ +  Y             +V   D   +K + + L  +  +VL  G++LLG+   E M
Sbjct:  359 HVPFGFILKD--GKKMSTRKGRVILLEEVLEEAI----ELAKQNIEEKNPNLKQKEEVAKQVGAGAVIFHDLKNERMHNIEFSLENMLKFEGETGPYVQYTHARACSILRKESV---EFETCTFTL-KDDYSWNIVKLLNKFPEVIEAACNKNEPSVISKYVLDVAQSFNKYYG------------NVRILDENAEKDSRLALVYAVTVVLKEGLRLLGVEAPEEM 562          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_STRSY (Arginyl-tRNA synthetase OS=Streptococcus suis (strain 05ZYH33) GN=argS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.983e-20
Identity = 67/225 (29.78%), Postives = 115/225 (51.11%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDD-VHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H++FG+V   K + +STRKG +I L  +LD+ +   +  +  KN D    +++ E  A  +G+ A+   D      NGY+FD+E M SFEG+TGPY+QYA+AR+ S+ RK+    +  A  D+ L    E  E+++ +  +  V        +P  +  Y   +++A +  Y             + +  +SPE+   L   Y +  +VL   ++LLG+   E+M
Sbjct:  358 HITFGLVTKDK-KKLSTRKGNIILLEPTLDEAISRALTQIEAKNPD----LENKEEVAHAVGVGAVKFYDLKTDRDNGYDFDLEAMVSFEGETGPYVQYAYARIQSILRKANFVPN--AENDYKLADT-ESWEIIKHIQNFSAVVERAGDKFDPSLIAKYAINLAQAFNKYY-----------AHTRILDESPERDSRLALAYATG-LVLKEALRLLGVKAPEKM 562          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_STRS2 (Arginyl-tRNA synthetase OS=Streptococcus suis (strain 98HAH33) GN=argS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.983e-20
Identity = 67/225 (29.78%), Postives = 115/225 (51.11%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDD-VHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H++FG+V   K + +STRKG +I L  +LD+ +   +  +  KN D    +++ E  A  +G+ A+   D      NGY+FD+E M SFEG+TGPY+QYA+AR+ S+ RK+    +  A  D+ L    E  E+++ +  +  V        +P  +  Y   +++A +  Y             + +  +SPE+   L   Y +  +VL   ++LLG+   E+M
Sbjct:  358 HITFGLVTKDK-KKLSTRKGNIILLEPTLDEAISRALTQIEAKNPD----LENKEEVAHAVGVGAVKFYDLKTDRDNGYDFDLEAMVSFEGETGPYVQYAYARIQSILRKANFVPN--AENDYKLADT-ESWEIIKHIQNFSAVVERAGDKFDPSLIAKYAINLAQAFNKYY-----------AHTRILDESPERDSRLALAYATG-LVLKEALRLLGVKAPEKM 562          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_ECOHS (Arginyl-tRNA synthetase OS=Escherichia coli O9:H4 (strain HS) GN=argS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.983e-20
Identity = 67/225 (29.78%), Postives = 108/225 (48.00%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDD-VHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H  FGM+    G+   TR G  + LAD LD+ +      V +KN D        E  A+ +GI A+   D S      Y FD + M +FEG+T PY+QYA+ R+ S+ RK+E+D+ +LA A   +   +E  +L   L Q+ +  T   +   P  +  YL+ ++   S  Y+             ++ A++ E + + + L +     L  G+  LG+  VERM
Sbjct:  366 HHMFGMMLGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKNPDM--PADGLEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEEQLAAAPVIIREDREA-QLAARLLQFEETLTVVAREGTPHVMCAYLYDLAGLFSGFYE----------HCPILSAENEEVRNSRLKLAQLTAKTLKLGLDTLGIETVERM 577          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_CYAP4 (Arginyl-tRNA synthetase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=argS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.983e-20
Identity = 66/228 (28.95%), Postives = 112/228 (49.12%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDD-VHNFMHDVMKKNEDKYKQVQDPEA---TADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            HV FG+V+   G+ + TR G  + L D LD+ +    +D++ + E + +Q + PE     A ++GI A+   D S    + Y F  ++M S +G+T PYL YA+ R+  + RK ++D  +L       +  +E   L R L Q  DV     +   P  +  YLF++S+  +  YD             ++ A+ P +  + +GL +     L  G+ LLG+  +ERM
Sbjct:  370 HVPFGLVQGEDGKKLKTRSGDTVRLQDLLDEAIDRARNDLVSRLEAEGRQ-ETPEFIDHVAQVVGIGAVKYADLSQNRTSNYVFSYDKMLSLQGNTAPYLIYAYVRVQGISRKGQIDLEQLTEQPTLSLQEEEEKLLARHLLQLEDVLAQVTEDLLPNRLCQYLFELSQKFNQFYD----------RCPILQAEEPLRN-SRLGLAQLTARTLKLGLSLLGIQVLERM 585          
The following BLAST results are available for this feature:
BLAST of FC910047 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
SYR_STRE43.815e-2030.36Arginyl-tRNA synthetase OS=Streptococcus equi subs... [more]
SYR_SHEPW3.815e-2029.46Arginyl-tRNA synthetase OS=Shewanella piezotoleran... [more]
SYR_SHEB53.815e-2032.17Arginyl-tRNA synthetase OS=Shewanella baltica (str... [more]
SYR_PSESM3.815e-2029.65Arginyl-tRNA synthetase OS=Pseudomonas syringae pv... [more]
SYR_ECO273.815e-2029.78Arginyl-tRNA synthetase OS=Escherichia coli O127:H... [more]
SYR1_BACCZ3.815e-2030.09Arginyl-tRNA synthetase 1 OS=Bacillus cereus (stra... [more]
SYR_STRSY4.983e-2029.78Arginyl-tRNA synthetase OS=Streptococcus suis (str... [more]
SYR_STRS24.983e-2029.78Arginyl-tRNA synthetase OS=Streptococcus suis (str... [more]
SYR_ECOHS4.983e-2029.78Arginyl-tRNA synthetase OS=Escherichia coli O9:H4 ... [more]
SYR_CYAP44.983e-2028.95Arginyl-tRNA synthetase OS=Cyanothece sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA56BF02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA56BF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910047 ID=FC910047; Name=FC910047; organism=Citrus clementina; type=EST; length=882bp
CAAGTGCGGTCACGTTTCTTTCGGCATGGTCAAGGACCCCAAGGGCCAGA
CCATGAGCACTCGCAAGGGCACTGTCATCTCGCTCGCCGACAGCCTGGAC
GATGTGCACAACTTCATGCACGATGTCATGAAGAAGAACGAAGACAAGTA
CAAGCAGGTCCAGGACCCCGAGGCAACTGCCGACATTCTCGGCATTTCCG
CCATCATGGTGCAGGACTTCAGCGGCAAGATGGCCAACGGCTACAACTTC
GACATGGAGCGCATGACCTCCTTCGAGGGCGACACTGGTCCCTACCTGCA
GTACGCACACGCCCGCCTGTGCTCCATGAAGCGCAAGTCCGAGCTCGATG
ACTCTGAACTCGCCAACGCCGACTTCAGCCTCATCACGGCCAAGGAGGGC
ATCGAGCTCGTCCGCACCCTCGCACAGTGGCCCGACGTCTTCACCAACAC
ACTCAAGACCCAGGAGCCCGTCACCGTCCTCACCTACCTGTTCAAGATGT
CCAAGGCTCTCAGCTCGTGCTACGACGCTAAGGACACCAACAATAAGAAC
GCGAAGACCATGAGTGTCATGTACGCAGACAGCCCCGAGAAGAAGGTTGC
TCTCATGGGCCTGTACGAGAGCGCTAGGATTGTGTTGGCCAACGGCATGA
AGCTGCTCGGTCTCACTCCTGTGGAGAGGATGTAAAAGGGCAGACCGGCA
GTGAGGGATTCAGAAACAAAAGTACGGGACTGGGGAAGACCGAAAGACGA
CTTCCCGGTCATGGCTAAATGTCAGGGACAGCGACGATAAGCTCTCTCTG
GTCCAGCATAGCACATTTGCCGAGGGACGGCCGGGCAGCAACACGCATGT
AATCTACGGTATGTGGGAAAGCTGTCTGCGTG
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