FC910047

Overview
NameFC910047
Unique NameFC910047
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length882
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_TERTT (Arginyl-tRNA synthetase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=argS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.508e-20
Identity = 73/228 (32.02%), Postives = 112/228 (49.12%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADI---LGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPE-KKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H  FG +    G+   TR G  + LA+ L++       V+  N +      D +  ADI   +GI AI   D S    N Y F+ + M SFEG+TGPYLQYA+ R+ S+ RK++LD    A AD ++  A+E    ++TL Q+ +V         P  +  YL+ +S    + Y+A            ++ +D PE  + + + L  S    LA G+ LLG+  +ERM
Sbjct:  368 HHPFGTMMGADGKPFKTRSGGTVKLAELLEEAVERASQVVAANSEL-----DAQEAADIARKVGIGAIKYADLSKTRTNDYVFNWDAMLSFEGNTGPYLQYAYTRIKSIFRKADLDLESFA-ADLNIYEAQEKALALKTL-QFAEVVEQVASEALPHVLCNYLYDLSSLFMTFYEA----------CPILKSDVPEDTRNSRLVLSASVAKTLALGLDLLGIEVMERM 578          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_STRA3 (Arginyl-tRNA synthetase OS=Streptococcus agalactiae serotype III GN=argS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.508e-20
Identity = 65/224 (29.02%), Postives = 106/224 (47.32%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            HV FG+V    G  +STRKG VI L  ++ +  N       + E K   + D +  A  +G+ AI   D      NGY+FD+E M SFEG+TGPY+QYAHAR+ S+ RK+  + S   N+D   +   E  E+++ +  +P +        EP  +  +   +++  +  Y      +++A+  S             + L  +   VL   ++LLG+     M
Sbjct:  359 HVPFGLVTKG-GAKLSTRKGNVILLEPTVAEAIN---RAASQIEAKNPNLADKDKVAQAVGVGAIKFYDLKTDRTNGYDFDLEAMVSFEGETGPYVQYAHARIQSILRKANFNPS---NSDNYSLNDVESWEIIKLIQDFPRIIVRAADNFEPSIIAKFAINLAQCFNKYYAHTRILDEDAEISS------------RLALCYATATVLKESLRLLGVDAPNEM 563          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_STRA1 (Arginyl-tRNA synthetase OS=Streptococcus agalactiae serotype Ia GN=argS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.508e-20
Identity = 65/224 (29.02%), Postives = 106/224 (47.32%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            HV FG+V    G  +STRKG VI L  ++ +  N       + E K   + D +  A  +G+ AI   D      NGY+FD+E M SFEG+TGPY+QYAHAR+ S+ RK+  + S   N+D   +   E  E+++ +  +P +        EP  +  +   +++  +  Y      +++A+  S             + L  +   VL   ++LLG+     M
Sbjct:  359 HVPFGLVTKG-GAKLSTRKGNVILLEPTVAEAIN---RAASQIEAKNPNLADKDKVAQAVGVGAIKFYDLKTDRTNGYDFDLEAMVSFEGETGPYVQYAHARIQSILRKANFNPS---NSDNYSLNDVESWEIIKLIQDFPRIIVRAADNFEPSIIAKFAINLAQCFNKYYAHTRILDEDAEISS------------RLALCYATATVLKESLRLLGVDAPNEM 563          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_SHIF8 (Arginyl-tRNA synthetase OS=Shigella flexneri serotype 5b (strain 8401) GN=argS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.508e-20
Identity = 66/225 (29.33%), Postives = 109/225 (48.44%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDD-VHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H  FGM+    G+   TR G  + LAD LD+ +      V +KN   Y    + E  A+ +GI A+   D S      Y FD + M +FEG+T PY+QYA+ R+ S+ RK+E+++ +LA A   +   +E  +L   L Q+ +  T   +   P  +  YL+ ++   S  Y+             ++ A++ E + + + L +     L  G+  LG+  VERM
Sbjct:  366 HHMFGMMLGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKNP--YMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEINEEQLAAAPVIIREDREA-QLAARLLQFEETLTVVAREGTPHVMCAYLYDLAGLFSGFYE----------HCPILSAENEEVRNSRLKLAQLTAKTLKLGLDTLGIETVERM 577          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_NOSP7 (Arginyl-tRNA synthetase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=argS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.508e-20
Identity = 65/227 (28.63%), Postives = 113/227 (49.78%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPE---ATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            HV FG+V    G+   TR G  + L D LD+  +  H  +K    K ++ +  E     A ++GISA+   D S    + Y F  ++M   +G+T PY+ Y +AR+  + RK +++  EL N +  L+  +  + L + L Q  +V ++  +   P  +  YLF++S+  +  YD            S++ A+ P++   L+    +AR  L  G+ LLG+  +ERM
Sbjct:  370 HVPFGLVLGEDGKKFKTRSGDTVRLRDLLDEAVSHAHADLKTRLQKEERQETEEFINEVARVVGISAVKYADLSQNRTSNYIFSYDKMLDLKGNTAPYMLYVYARIHGISRKGDINFKELGN-NAVLLQHETELALAKYLLQLDEVISSVEQDLLPNRLCEYLFELSQKFNQFYD----------RCSILQAEEPQRTSRLVLCDLTAR-TLKLGLSLLGIQVLERM 584          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_LACDB (Arginyl-tRNA synthetase OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=argS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.508e-20
Identity = 67/205 (32.68%), Postives = 113/205 (55.12%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCY-------DAKDTNNKNAKTMSVMYADSPEKKVAL 604
            H+SFG++    GQ MSTRKG V++L D L++  +      K+  +K   +++ +  A  +GI A++  D      N  +F++E +  FEG+TGPY+QYA AR  S+ RKS + D   ++AD + I A+E  +LV  +A++ D     ++T +P  +  Y  +++K  +  Y       D  D + K A+ ++V+ A S   K AL
Sbjct:  358 HISFGLMSI-NGQKMSTRKGNVVNLEDVLNESVDLAR---KQISEKNAGLKNADEVAKQVGIGAVVFHDLKNYRRNPIDFNLEEVVKFEGETGPYVQYARARGESLLRKSGITD--FSDADLTKIGAEEW-DLVSFMARYADTIQKAMETYDPSAIAKYALELAKRFNKYYAHTRILVDDVDEDVKKAR-LAVVQAVSHVIKSAL 554          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_EXISA (Arginyl-tRNA synthetase OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=argS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.508e-20
Identity = 63/225 (28.00%), Postives = 109/225 (48.44%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDD-VHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            HV FG++   +G+ MSTRKG ++ L + L + +     ++ +KN D    + + +  A ++G+ A++  D   +  N   FD++ M  FEG+TGPY+QY +AR  S+ RK   D S    AD           +V  L  +P V T   + +EP  +  Y+  +++A +  Y              V   +    K + + L ++  +VL  G++LLG+   E M
Sbjct:  358 HVPFGLILQ-EGKKMSTRKGRIVLLEEVLKEAIEKAQANIEQKNPD----LANAQDVARMVGVGAVVFHDLKNERINNIEFDLDSMLKFEGETGPYVQYTNARANSLLRKGNYDGSPFTGADDDYSWG-----VVTMLNAFPHVITRAHERREPSIISRYVLDLAQAFNKYYG------------HVRVLEEDAGKQSRLALVKAVTLVLTEGLRLLGVEAPEEM 560          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_CHLAD (Arginyl-tRNA synthetase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=argS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.508e-20
Identity = 66/225 (29.33%), Postives = 108/225 (48.00%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDD-VHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            HV FG++  P GQ +ST+KG ++ L   LDD V      V  K+ D    +++  A A+ +GI A++  D           D +RM S EG++  YLQY+HAR  S+ R++  +   LA AD +L+T      L+R LA+ P+          P  +  + +  ++     ++             V+ A++P  + A + L  +    L NG+ LLG+   ERM
Sbjct:  362 HVPFGVITTPDGQPLSTKKGNMVYLEALLDDAVARARALVDAKSADL--PLEERAAIAEAVGIGAVIYNDLYQDPRRNITLDWDRMLSIEGNSAAYLQYSHARCRSILRRAADEGVALAEADLTLLTHPSEQRLIRHLARLPEAVREAGARYAPFVIADWCYTTAREFGIFFE----------QCPVLRAETPALRAARLQLVAATANALRNGLALLGIQAPERM 574          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_STRA5 (Arginyl-tRNA synthetase OS=Streptococcus agalactiae serotype V GN=argS PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.500e-20
Identity = 65/224 (29.02%), Postives = 105/224 (46.88%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            HV FG+V    G  +STRKG VI L  ++ +  N       + E K   + D +  A  +G+ AI   D      NGY+FD+E M SFEG+TGPY+QYAHAR+ S+ RK+    S   N+D   +   E  E+++ +  +P +        EP  +  +   +++  +  Y      +++A+  S             + L  +   VL   ++LLG+     M
Sbjct:  359 HVPFGLVTKG-GAKLSTRKGNVILLEPTVAEAIN---RAASQIEAKNPNLADKDKVAQAVGVGAIKFYDLKTDRTNGYDFDLEAMVSFEGETGPYVQYAHARIQSILRKANFSPS---NSDNYSLNDVESWEIIKLIQDFPRIIVRAADNFEPSIIAKFAINLAQCFNKYYAHTRILDEDAEISS------------RLALCYATATVLKESLRLLGVDAPNEM 563          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_SHISS (Arginyl-tRNA synthetase OS=Shigella sonnei (strain Ss046) GN=argS PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.500e-20
Identity = 66/225 (29.33%), Postives = 109/225 (48.44%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDD-VHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H  FGM+    G+   TR G  + LAD LD+ +      V +KN D      + E  A+ +GI A+   D S      Y FD + M +FEG+T PY+QYA+ R+ S+ RK+E+++ +LA A   +   +E  +L   L Q+ +  T   +   P  +  YL+ ++   S  Y+             ++ A++ E + + + L +     L  G+  LG+  VERM
Sbjct:  367 HHMFGMMLGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKNPDM--PADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEINEEQLAAAPVIIREDREA-QLAARLLQFEETLTVVAREGTPHVMCAYLYDLAGLFSGFYE----------HCPILSAENEEVRNSRLKLAQLTAKTLKLGLDTLGIETVERM 578          
The following BLAST results are available for this feature:
BLAST of FC910047 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
SYR_TERTT6.508e-2032.02Arginyl-tRNA synthetase OS=Teredinibacter turnerae... [more]
SYR_STRA36.508e-2029.02Arginyl-tRNA synthetase OS=Streptococcus agalactia... [more]
SYR_STRA16.508e-2029.02Arginyl-tRNA synthetase OS=Streptococcus agalactia... [more]
SYR_SHIF86.508e-2029.33Arginyl-tRNA synthetase OS=Shigella flexneri serot... [more]
SYR_NOSP76.508e-2028.63Arginyl-tRNA synthetase OS=Nostoc punctiforme (str... [more]
SYR_LACDB6.508e-2032.68Arginyl-tRNA synthetase OS=Lactobacillus delbrueck... [more]
SYR_EXISA6.508e-2028.00Arginyl-tRNA synthetase OS=Exiguobacterium sp. (st... [more]
SYR_CHLAD6.508e-2029.33Arginyl-tRNA synthetase OS=Chloroflexus aggregans ... [more]
SYR_STRA58.500e-2029.02Arginyl-tRNA synthetase OS=Streptococcus agalactia... [more]
SYR_SHISS8.500e-2029.33Arginyl-tRNA synthetase OS=Shigella sonnei (strain... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA56BF02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA56BF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910047 ID=FC910047; Name=FC910047; organism=Citrus clementina; type=EST; length=882bp
CAAGTGCGGTCACGTTTCTTTCGGCATGGTCAAGGACCCCAAGGGCCAGA
CCATGAGCACTCGCAAGGGCACTGTCATCTCGCTCGCCGACAGCCTGGAC
GATGTGCACAACTTCATGCACGATGTCATGAAGAAGAACGAAGACAAGTA
CAAGCAGGTCCAGGACCCCGAGGCAACTGCCGACATTCTCGGCATTTCCG
CCATCATGGTGCAGGACTTCAGCGGCAAGATGGCCAACGGCTACAACTTC
GACATGGAGCGCATGACCTCCTTCGAGGGCGACACTGGTCCCTACCTGCA
GTACGCACACGCCCGCCTGTGCTCCATGAAGCGCAAGTCCGAGCTCGATG
ACTCTGAACTCGCCAACGCCGACTTCAGCCTCATCACGGCCAAGGAGGGC
ATCGAGCTCGTCCGCACCCTCGCACAGTGGCCCGACGTCTTCACCAACAC
ACTCAAGACCCAGGAGCCCGTCACCGTCCTCACCTACCTGTTCAAGATGT
CCAAGGCTCTCAGCTCGTGCTACGACGCTAAGGACACCAACAATAAGAAC
GCGAAGACCATGAGTGTCATGTACGCAGACAGCCCCGAGAAGAAGGTTGC
TCTCATGGGCCTGTACGAGAGCGCTAGGATTGTGTTGGCCAACGGCATGA
AGCTGCTCGGTCTCACTCCTGTGGAGAGGATGTAAAAGGGCAGACCGGCA
GTGAGGGATTCAGAAACAAAAGTACGGGACTGGGGAAGACCGAAAGACGA
CTTCCCGGTCATGGCTAAATGTCAGGGACAGCGACGATAAGCTCTCTCTG
GTCCAGCATAGCACATTTGCCGAGGGACGGCCGGGCAGCAACACGCATGT
AATCTACGGTATGTGGGAAAGCTGTCTGCGTG
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