FC910047

Overview
NameFC910047
Unique NameFC910047
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length882
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_STRPZ (Arginyl-tRNA synthetase OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=argS PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.953e-22
Identity = 68/201 (33.83%), Postives = 105/201 (52.24%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCY---DAKDTNNKNAKTMSVMYADSPEKKVAL 604
            HV+FG+V    G  +STRKG VI L  ++ +  N       + E K   + D EA A  +G+ AI   D      NGY+FD+E M SFEG+TGPY+QYAHAR+ S+ RK++   S  A   +SL  A E  E+++ +  +P +   T    EP  +  +   ++++ +  Y      D N++    + + YA +   K AL
Sbjct:  359 HVAFGLVTKG-GAKLSTRKGNVILLEPTVAEAIN---RAASQIEAKNPNLADKEAVAHAVGVGAIKFYDLKTDRMNGYDFDLEAMVSFEGETGPYVQYAHARIQSILRKADFTPS--ATTTYSLADA-ESWEIIKLIQDFPRIIKRTSDNFEPSIMAKFAINLAQSFNKYYAHTRILDDNSERDNRLVLCYATATVLKEAL 552          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_PSYIN (Arginyl-tRNA synthetase OS=Psychromonas ingrahamii (strain 37) GN=argS PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.953e-22
Identity = 70/226 (30.97%), Postives = 114/226 (50.44%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEAT--ADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H+ FG V    G+   TR G V  LAD L +     ++++K   +K K++ +PE    A ++GIS++   D S    + Y F  + M SFEG+T PYL YA+ R+ S+  K+ ++   +  A  SL   KE I+L   L Q+ D+     K   P  + +YLF+++   SS Y+A            ++ A++  +K + + L       L  G+ LLG+  +ERM
Sbjct:  372 HMPFGTVMGEDGRPFKTRSGAVAKLADLLTEAEVRAYELVK---EKNKEMSEPELRHIASVVGISSVKYADLSKNRTSDYTFSFDSMLSFEGNTAPYLLYAYTRVVSIFNKAGIEMGSV-TAAVSLTQEKE-IDLANKLIQFNDIIDQVAKQGMPHFLCSYLFELAGLFSSFYEA----------CPILIAETETQKQSRLKLAGLTAKTLKQGLSLLGINTLERM 582          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_ENT38 (Arginyl-tRNA synthetase OS=Enterobacter sp. (strain 638) GN=argS PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.081e-22
Identity = 69/225 (30.67%), Postives = 111/225 (49.33%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDD-VHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H  FGM+    G+   TR G  + L+D LD+ +      V +KN D     ++ E  A+ +GI A+   D S      Y FD + M +FEG+T PY+QYA+ R+ S+ RK+ +D+S LANA   +IT     +L   L Q+ +  T   +   P  + +YL+ ++   S  Y+             ++ AD+ E + + + L +     L  G+  LG+  VERM
Sbjct:  366 HHMFGMMLGKDGKPFKTRAGGTVKLSDLLDEALERARRLVAEKNPDM--PAEELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKANIDESALANAAV-VITEDREAQLAARLLQFEETLTVVAREGTPHVMCSYLYDLAGLFSGFYE----------HCPILSADNEEARNSRLKLAQLTAKTLKLGLDTLGIETVERM 577          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_LEUMM (Arginyl-tRNA synthetase OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=argS PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.186e-21
Identity = 67/224 (29.91%), Postives = 115/224 (51.34%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H++FG++    G+ MSTRKG V+ L D LDD H      +K+ ++K   + D +  A+ +G  A++  D      N ++F++E +  FEGDTGPY+QY +AR  S+ RK+ +   +L + D +L T     +++ TL  +P       + +E   +  Y   +S+A +  Y        N+K ++        +  A + L +S  IVL   ++LLG+   E M
Sbjct:  360 HIAFGLITF-NGKKMSTRKGDVVLLKDVLDDAHEL---ALKQIQEKNPDLGDKDTVAEEVGAGAVVFHDLMNDRTNNFDFNLEEVVRFEGDTGPYVQYTNARAKSILRKTSV---QLTSDDLNL-TDPATWDIITTLNNFPKTVQRAWQQREASIIAKYALNLSRAFNKYY-------ANSKILT-----EDVQLNARLVLVKSVSIVLTESLRLLGVKAPEEM 563          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_CLOBH (Arginyl-tRNA synthetase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=argS PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.186e-21
Identity = 70/227 (30.84%), Postives = 117/227 (51.54%), Query Frame = 2
Query:    5 CGHVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSEL-ANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            C HV FG+VK    + +STR G V+ L D L+     + + +K   +K   +++    A  LGI A++             FD + + SF+G+TGPY++Y++AR  S+ RK+     EL   AD+S +++KE  EL + L  + D   N +   EP  V  Y+ +++KA +  Y+A            ++ A+  + K+A + L E+   V+ N + LLG+  VE M
Sbjct:  355 CKHVGFGLVK-LANKKLSTRNGDVVFLEDLLNQS---VEETLKIINEKNPNLKNKGDVAKKLGIGAVVFTYLKNNRERDIVFDWKEILSFDGETGPYVEYSYARGKSILRKA----GELTGEADYSKLSSKEEFELAKLLGGFNDAIMNAIDKLEPAMVTRYVIEVAKAFNKFYNAH----------GILNAEDNDVKLARVKLVEATCQVIKNALNLLGIDVVEEM 563          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_CLOB1 (Arginyl-tRNA synthetase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=argS PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.186e-21
Identity = 70/227 (30.84%), Postives = 117/227 (51.54%), Query Frame = 2
Query:    5 CGHVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSEL-ANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            C HV FG+VK    + +STR G V+ L D L+     + + +K   +K   +++    A  LGI A++             FD + + SF+G+TGPY++Y++AR  S+ RK+     EL   AD+S +++KE  EL + L  + D   N +   EP  V  Y+ +++KA +  Y+A            ++ A+  + K+A + L E+   V+ N + LLG+  VE M
Sbjct:  355 CKHVGFGLVK-LANKKLSTRNGDVVFLEDLLNQS---VEETLKIINEKNPNLKNKGDVAKKLGIGAVVFTYLKNNRERDIVFDWKEILSFDGETGPYVEYSYARGKSILRKA----GELTGEADYSKLSSKEEFELAKLLGGFNDAIMNAIDKLEPAMVTRYVIEVAKAFNKFYNAH----------GILNAEDNDVKLARVKLVEATCQVIKNALNLLGIDVVEEM 563          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_SHEWM (Arginyl-tRNA synthetase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=argS PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.023e-21
Identity = 69/224 (30.80%), Postives = 115/224 (51.34%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H+ FG +    G+   TR G V+ L D L +      ++++       + +  +  A ++GIS++   D S   A+ Y F  E+M SFEG+T PYL YA+ R+  + +++   D +L++A   L   KE  EL   LAQ+ +V T  +   +P  +  YLF+++ A SS Y+A            V+ AD+ E+K + + L +     L  G+ LLG+  +ERM
Sbjct:  372 HMGFGTMNGDDGRPFKTRSGGVVKLVDLLSEADTRALELVRSKNPDMDEAELAKI-AKVVGISSVKYADLSKNRASDYIFSFEQMLSFEGNTAPYLLYAYTRVAGIFKRA--TDVDLSDAKIQLEHEKEK-ELGTKLAQFNEVLTRMVSKGQPHALCGYLFELAGAFSSFYEA----------CPVLAADTEEQKKSRLLLAKLTAKTLKQGLGLLGIETLERM 581          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_SHESH (Arginyl-tRNA synthetase OS=Shewanella sediminis (strain HAW-EB3) GN=argS PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.023e-21
Identity = 69/224 (30.80%), Postives = 115/224 (51.34%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H+ FG +    G+   TR G V+ L D L +      ++++       Q +  E  A ++GIS++   D S   A+ Y F  E+M SFEG+T PYL YA+ R+  + +++   D +L++A   L   KE  +L   LAQ+ +V +  +   +P  +  YLF+++ A SS Y+A            V+ A+S E+K + + L +     L  G+ LLG+  +ERM
Sbjct:  372 HMGFGTMNGDDGRPFKTRSGGVVKLVDLLTEADTRALELVRSKNPDMDQAE-LEKIAKVVGISSVKYADLSKNRASDYIFSFEQMLSFEGNTAPYLLYAYTRVAGIFKRA--TDIDLSDAKMQLDHDKEK-DLGNKLAQFGEVLSRMVTKGQPHALCGYLFELAGAFSSFYEA----------CPVLAAESEEQKKSRLLLSQLTAKTLKQGLDLLGIETLERM 581          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_CLOB8 (Arginyl-tRNA synthetase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=argS PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.023e-21
Identity = 64/226 (28.32%), Postives = 119/226 (52.65%), Query Frame = 2
Query:    5 CGHVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            C HV FG+VK    + +STR G+++ L D L +    +   M+   +K  ++++ E  A  +G+ A++             FD + + SF+G+TGPY+QY++AR  S+  + +         D+S +++KE  ELV+++A +  V T  L   EP  +  Y+ +++K  +  Y+A           SV+  +  + K   + L +++  V+ NG++LLG+  VE+M
Sbjct:  355 CVHVGFGLVKFAD-RKLSTRNGSIVLLDDLLREA---VEKTMEVINEKNPELENKEEVAKKIGVGAVIFTYLKNSREKDIVFDWKEILSFDGETGPYVQYSYARGNSILNRGK---ECTGTVDYSKLSSKEEFELVKSIANFNSVITLALDKLEPSILTRYVIEVAKGFNKFYNAH----------SVLNLEDEDLKATRLNLVKASLQVIKNGLELLGIDVVEKM 563          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_STRMU (Arginyl-tRNA synthetase OS=Streptococcus mutans GN=argS PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.642e-21
Identity = 70/225 (31.11%), Postives = 110/225 (48.89%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDD-VHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            HVSFG+V    GQ +STRKG VI L  ++ + V   +  +  KN D    + + EA A  +G+ AI   D      NGY+FD+E M SFEG+TGPY+QYAHAR+ S+ RK++       N     +   E  E+++ +  +P+         EP  +  +   ++++ +  Y             + +  +SPE+   L   Y +A  VL   + LLG+     M
Sbjct:  359 HVSFGLVTK-NGQKLSTRKGNVILLEPTIAEAVKRSLAQIDTKNPD----LVNKEAVAHAVGVGAIKFYDLKTDRTNGYDFDLEAMVSFEGETGPYVQYAHARIQSILRKADFQPQATENYQ---LNDTESWEIIKLIQDFPNTIVRAADNFEPSLIARFAIHLAQSFNKYY-----------AHTRILDNSPERDSRLALSYATA-TVLKEALALLGVEAPNEM 563          
The following BLAST results are available for this feature:
BLAST of FC910047 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
SYR_STRPZ6.953e-2233.83Arginyl-tRNA synthetase OS=Streptococcus pyogenes ... [more]
SYR_PSYIN6.953e-2230.97Arginyl-tRNA synthetase OS=Psychromonas ingrahamii... [more]
SYR_ENT389.081e-2230.67Arginyl-tRNA synthetase OS=Enterobacter sp. (strai... [more]
SYR_LEUMM1.186e-2129.91Arginyl-tRNA synthetase OS=Leuconostoc mesenteroid... [more]
SYR_CLOBH1.186e-2130.84Arginyl-tRNA synthetase OS=Clostridium botulinum (... [more]
SYR_CLOB11.186e-2130.84Arginyl-tRNA synthetase OS=Clostridium botulinum (... [more]
SYR_SHEWM2.023e-2130.80Arginyl-tRNA synthetase OS=Shewanella woodyi (stra... [more]
SYR_SHESH2.023e-2130.80Arginyl-tRNA synthetase OS=Shewanella sediminis (s... [more]
SYR_CLOB82.023e-2128.32Arginyl-tRNA synthetase OS=Clostridium beijerincki... [more]
SYR_STRMU2.642e-2131.11Arginyl-tRNA synthetase OS=Streptococcus mutans GN... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA56BF02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA56BF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910047 ID=FC910047; Name=FC910047; organism=Citrus clementina; type=EST; length=882bp
CAAGTGCGGTCACGTTTCTTTCGGCATGGTCAAGGACCCCAAGGGCCAGA
CCATGAGCACTCGCAAGGGCACTGTCATCTCGCTCGCCGACAGCCTGGAC
GATGTGCACAACTTCATGCACGATGTCATGAAGAAGAACGAAGACAAGTA
CAAGCAGGTCCAGGACCCCGAGGCAACTGCCGACATTCTCGGCATTTCCG
CCATCATGGTGCAGGACTTCAGCGGCAAGATGGCCAACGGCTACAACTTC
GACATGGAGCGCATGACCTCCTTCGAGGGCGACACTGGTCCCTACCTGCA
GTACGCACACGCCCGCCTGTGCTCCATGAAGCGCAAGTCCGAGCTCGATG
ACTCTGAACTCGCCAACGCCGACTTCAGCCTCATCACGGCCAAGGAGGGC
ATCGAGCTCGTCCGCACCCTCGCACAGTGGCCCGACGTCTTCACCAACAC
ACTCAAGACCCAGGAGCCCGTCACCGTCCTCACCTACCTGTTCAAGATGT
CCAAGGCTCTCAGCTCGTGCTACGACGCTAAGGACACCAACAATAAGAAC
GCGAAGACCATGAGTGTCATGTACGCAGACAGCCCCGAGAAGAAGGTTGC
TCTCATGGGCCTGTACGAGAGCGCTAGGATTGTGTTGGCCAACGGCATGA
AGCTGCTCGGTCTCACTCCTGTGGAGAGGATGTAAAAGGGCAGACCGGCA
GTGAGGGATTCAGAAACAAAAGTACGGGACTGGGGAAGACCGAAAGACGA
CTTCCCGGTCATGGCTAAATGTCAGGGACAGCGACGATAAGCTCTCTCTG
GTCCAGCATAGCACATTTGCCGAGGGACGGCCGGGCAGCAACACGCATGT
AATCTACGGTATGTGGGAAAGCTGTCTGCGTG
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