FC910047

Overview
NameFC910047
Unique NameFC910047
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length882
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5818 contig Ccv1_Contig5818:1..882. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_SHELP (Arginyl-tRNA synthetase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=argS PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.451e-21
Identity = 73/226 (32.30%), Postives = 116/226 (51.33%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMK-KNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSM-KRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H+ FG +    G+   TR G V+ L D L +      ++++ KN D  ++  +    A ++GI+++   D S   A+ Y F  E+M SFEG+T PYL YA+ R+  + KR +E+D   L  A   L   KE  EL   LAQ+ +V    +   +P  +  YLF+++ A SS Y+A            V+ ADS ++K + + L +     L  G+ LLG+  +ERM
Sbjct:  372 HMGFGTMNGEDGRPFKTRSGGVVKLVDLLSEAETRALELVRSKNPDMDEE--ELAKIAKVVGIASVKYADLSKNRASDYIFSFEQMLSFEGNTAPYLLYAYTRVAGIFKRAAEID---LTGASIKLEHDKEK-ELGNKLAQFAEVLGRMVAKGQPHALCGYLFELAGAFSSFYEA----------CPVLAADSEDEKKSRLLLAQLTAKTLKQGLDLLGIETLERM 581          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_SHEHH (Arginyl-tRNA synthetase OS=Shewanella halifaxensis (strain HAW-EB4) GN=argS PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.451e-21
Identity = 69/224 (30.80%), Postives = 115/224 (51.34%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H+ FG +    G+   TR G V+ L D L +      D+++       + +  E  A ++GI+++   D S   A+ Y F  E+M SFEG+T PYL YA+ R+  + ++++  D +L++A   L   KE  +L   LAQ+ +V T  +   +P  +  YLF+++ A SS Y+A            V+ A++ E K + + L +     L  G+ LLGL  +ERM
Sbjct:  372 HMGFGTMNGEDGRPFKTRSGGVVKLIDLLKEADTRALDLVRSKNPDMDEAELAEI-ARVVGIASVKYADLSKNRASDYIFSFEQMLSFEGNTAPYLLYAYTRVAGIFKRAQ--DVDLSDATIILEHEKEK-DLGTKLAQFGEVMTRMVGKGQPHALCGYLFELAGAFSSFYEA----------CPVLAAETEESKKSRLLLSQLTAKTLKQGLNLLGLETLERM 581          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_CLOAB (Arginyl-tRNA synthetase OS=Clostridium acetobutylicum GN=argS PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.507e-21
Identity = 66/226 (29.20%), Postives = 113/226 (50.00%), Query Frame = 2
Query:    5 CGHVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            C HV +G+V+  +G+ +STR G VI L D L +      +++   E+K  ++ + E  +  +GI A++             FD + M SFEG+TGPY+QY++AR  S+ RK         N  +  + + E  +L++ L  +     N +   EP  +  Y+ +++KA +  Y+A + +N              E K A + L E+A IV+ N + L+G+  VE M
Sbjct:  355 CIHVGYGLVRFAEGK-LSTRNGDVIFLEDLLKESVQKTSEII---EEKNPELDNKEEVSRKVGIGAVIFTYLKNGRERDIIFDWKEMLSFEGETGPYVQYSYARAKSILRKL---GEVKGNVSYDKLVSAEEFDLIKQLKGFNGAILNAIDRLEPSVITRYVIEVAKAFNKFYNAYNISN----------TSDEELKNARLALVEAASIVIKNALSLIGIDVVEEM 563          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_ALKMQ (Arginyl-tRNA synthetase OS=Alkaliphilus metalliredigens (strain QYMF) GN=argS PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.507e-21
Identity = 62/224 (27.68%), Postives = 119/224 (53.12%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H+SFG V   +G+ + +RKG+V+ L + L+     + +++   E+K   V++ E  A  +GI AI+  D S       +F  +   SFEG+TGPY+QY HAR  S+ RK+E+  ++  NA  + +T    + +++T+ Q+P V  +  +  EP  +  ++  +++A +  Y               +  +  E K+A + + ++ + VL+ G+ L+G+   E+M
Sbjct:  360 HISFGRVTH-EGRRIQSRKGSVVLLEEVLNGAVERISEII---EEKNPNVENKEQVAKDVGIGAIVFNDLSNNRIKDISFSWDTAFSFEGETGPYVQYTHARASSVLRKAEVAITDHINA--AHLTDDVTMNVIKTIEQFPQVIVDAQRKNEPSIITRHIVNIAQAFNRFYHDHP-----------ILVEDEELKMARLAVVQAVKQVLSVGLSLIGIKAPEKM 566          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_SHESM (Arginyl-tRNA synthetase OS=Shewanella sp. (strain MR-4) GN=argS PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.886e-21
Identity = 67/224 (29.91%), Postives = 114/224 (50.89%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H+ FG +    G+   TR G V+ L D LD+ +    ++++       +    E  A ++GISA+   D S    + Y F  E+M SFEG+T PYL YA+ R+  + +++   D +L+ A   L   KE  +L   LAQ+ ++ +  +   +P  +  YL++++ A SS Y+A            V+ AD+ E+K + + L +     L  G+ LLG+  +ERM
Sbjct:  372 HLGFGTMNGEDGRPFKTRTGGVVKLVDLLDEANTRALELVRSKNPDMDEATLAEI-ARVVGISAVKYADLSKNRTSDYIFSFEQMLSFEGNTAPYLLYAYTRVAGIFKRA--TDIDLSQAKIVLEHEKEK-DLGNKLAQFGEILSRVIDKGQPHVLCGYLYELAGAFSSFYEA----------CPVLAADNDEQKHSRLLLSQLTANTLQKGLNLLGIETLERM 581          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_SHEON (Arginyl-tRNA synthetase OS=Shewanella oneidensis GN=argS PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.886e-21
Identity = 67/224 (29.91%), Postives = 114/224 (50.89%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H+ FG +    G+   TR G V+ L D LD+ +    ++++       +    E  A ++GISA+   D S    + Y F  E+M SFEG+T PYL YA+ R+  + +++   D +L+ A   L   KE  +L   LAQ+ ++ +  +   +P  +  YL++++ A SS Y+A            V+ AD+ E+K + + L +     L  G+ LLG+  +ERM
Sbjct:  372 HLGFGTMNGEDGRPFKTRTGGVVKLVDLLDEANTRALELVRSKNPDMDEATLAEI-ARVVGISAVKYADLSKNRTSDYIFSFEQMLSFEGNTAPYLLYAYTRVAGIFKRA--TDVDLSQAKIVLEHEKEK-DLGNKLAQFGEILSRVVDKGQPHVLCGYLYELAGAFSSFYEA----------CPVLAADNDEQKHSRLLLSQLTASTLQKGLNLLGIETLERM 581          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_SHESR (Arginyl-tRNA synthetase OS=Shewanella sp. (strain MR-7) GN=argS PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.688e-21
Identity = 67/224 (29.91%), Postives = 114/224 (50.89%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H+ FG +    G+   TR G V+ L D LD+ +    ++++       +    E  A ++GISA+   D S    + Y F  E+M SFEG+T PYL YA+ R+  + +++   D +L+ A   L   KE  +L   LAQ+ ++ +  +   +P  +  YL++++ A SS Y+A            V+ AD+ E+K + + L +     L  G+ LLG+  +ERM
Sbjct:  372 HLGFGTMNGEDGRPFKTRTGGVVKLVDLLDEANTRALELVRSKNPDMDEATLAEI-ARVVGISAVKYADLSKNRTSDYIFSFEQMLSFEGNTAPYLLYAYTRVAGIFKRA--TDIDLSQAKIVLEHEKEK-DLGNKLAQFGEILSRVVDKGQPHVLCGYLYELAGAFSSFYEA----------CPVLAADNDEQKHSRLLLSQLTANTLQKGLNLLGIETLERM 581          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_SHESA (Arginyl-tRNA synthetase OS=Shewanella sp. (strain ANA-3) GN=argS PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.688e-21
Identity = 67/224 (29.91%), Postives = 114/224 (50.89%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H+ FG +    G+   TR G V+ L D LD+ +    ++++       +    E  A ++GISA+   D S    + Y F  E+M SFEG+T PYL YA+ R+  + +++   D +L+ A   L   KE  +L   LAQ+ ++ +  +   +P  +  YL++++ A SS Y+A            V+ AD+ E+K + + L +     L  G+ LLG+  +ERM
Sbjct:  372 HLGFGTMNGEDGRPFKTRTGGVVKLVDLLDEANTRALELVRSKNPDMDEATLAEI-ARVVGISAVKYADLSKNRTSDYIFSFEQMLSFEGNTAPYLLYAYTRVAGIFKRA--TDIDLSQAKIVLEHEKEK-DLGNKLAQFGEILSRVVDKGQPHVLCGYLYELAGAFSSFYEA----------CPVLAADNDEQKHSRLLLSQLTANTLQKGLNLLGIETLERM 581          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_ALCBS (Arginyl-tRNA synthetase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=argS PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.688e-21
Identity = 69/226 (30.53%), Postives = 113/226 (50.00%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEAT--ADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H+ FG +  P G+   TR G  + L D LD+       ++   ++K  Q+ D E    A  +GI A+   D S   ++ Y F+ E+M SFEG+T PYL YA+ R+ S+ RK+ELD + + + DF L+       L   L Q+ +V  N     +P  +  YL+ ++   SS Y+             ++ ++    + + + L       L +GM+LLGL+P+ERM
Sbjct:  374 HMGFGTMNGPDGRPFKTRDGGTVKLVDLLDEAEQRAFALV---QEKNPQLDDEELRNIARSVGIGAVKYADLSKNRSSDYIFNFEQMLSFEGNTAPYLLYAYTRVASVFRKAELDMANV-SGDF-LLNEDAEHTLAARLVQFGEVLQNVADKGQPHLLSAYLYDVAGLFSSFYE----------HCPILSSEDERIRQSRLKLAALTARTLKHGMELLGLSPLERM 584          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_STRZT (Arginyl-tRNA synthetase OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=argS PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.004e-20
Identity = 65/224 (29.02%), Postives = 113/224 (50.45%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            HV FG+V   +G+ +STRKG VI L  ++ +    +     + E K  ++++ +  A  +GI AI   D      NGY+FD+E M SFEG+TGPY+QYA+AR+ S+ RK++       N     +   E  E+++ +  +P +        EP  +  +   ++++ +  Y             + +  +SPE+   L   Y +A +VL   ++LLG+   E+M
Sbjct:  359 HVPFGLVTK-EGKKLSTRKGNVILLEPTVAEA---VSRAKVQIEAKNPELENKDQVAHAVGIGAIKFYDLKTDRTNGYDFDLEAMVSFEGETGPYVQYAYARIQSILRKADFKPETAGNYS---LNDTESWEIIKLIQDFPRIINRAADNFEPSIIAKFAISLAQSFNKYY-----------AHTRILDESPERDSRLALSYATA-VVLKEALRLLGVEAPEKM 563          
The following BLAST results are available for this feature:
BLAST of FC910047 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
SYR_SHELP3.451e-2132.30Arginyl-tRNA synthetase OS=Shewanella loihica (str... [more]
SYR_SHEHH3.451e-2130.80Arginyl-tRNA synthetase OS=Shewanella halifaxensis... [more]
SYR_CLOAB4.507e-2129.20Arginyl-tRNA synthetase OS=Clostridium acetobutyli... [more]
SYR_ALKMQ4.507e-2127.68Arginyl-tRNA synthetase OS=Alkaliphilus metallired... [more]
SYR_SHESM5.886e-2129.91Arginyl-tRNA synthetase OS=Shewanella sp. (strain ... [more]
SYR_SHEON5.886e-2129.91Arginyl-tRNA synthetase OS=Shewanella oneidensis G... [more]
SYR_SHESR7.688e-2129.91Arginyl-tRNA synthetase OS=Shewanella sp. (strain ... [more]
SYR_SHESA7.688e-2129.91Arginyl-tRNA synthetase OS=Shewanella sp. (strain ... [more]
SYR_ALCBS7.688e-2130.53Arginyl-tRNA synthetase OS=Alcanivorax borkumensis... [more]
SYR_STRZT1.004e-2029.02Arginyl-tRNA synthetase OS=Streptococcus pneumonia... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA56BF02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA56BF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910047 ID=FC910047; Name=FC910047; organism=Citrus clementina; type=EST; length=882bp
CAAGTGCGGTCACGTTTCTTTCGGCATGGTCAAGGACCCCAAGGGCCAGA
CCATGAGCACTCGCAAGGGCACTGTCATCTCGCTCGCCGACAGCCTGGAC
GATGTGCACAACTTCATGCACGATGTCATGAAGAAGAACGAAGACAAGTA
CAAGCAGGTCCAGGACCCCGAGGCAACTGCCGACATTCTCGGCATTTCCG
CCATCATGGTGCAGGACTTCAGCGGCAAGATGGCCAACGGCTACAACTTC
GACATGGAGCGCATGACCTCCTTCGAGGGCGACACTGGTCCCTACCTGCA
GTACGCACACGCCCGCCTGTGCTCCATGAAGCGCAAGTCCGAGCTCGATG
ACTCTGAACTCGCCAACGCCGACTTCAGCCTCATCACGGCCAAGGAGGGC
ATCGAGCTCGTCCGCACCCTCGCACAGTGGCCCGACGTCTTCACCAACAC
ACTCAAGACCCAGGAGCCCGTCACCGTCCTCACCTACCTGTTCAAGATGT
CCAAGGCTCTCAGCTCGTGCTACGACGCTAAGGACACCAACAATAAGAAC
GCGAAGACCATGAGTGTCATGTACGCAGACAGCCCCGAGAAGAAGGTTGC
TCTCATGGGCCTGTACGAGAGCGCTAGGATTGTGTTGGCCAACGGCATGA
AGCTGCTCGGTCTCACTCCTGTGGAGAGGATGTAAAAGGGCAGACCGGCA
GTGAGGGATTCAGAAACAAAAGTACGGGACTGGGGAAGACCGAAAGACGA
CTTCCCGGTCATGGCTAAATGTCAGGGACAGCGACGATAAGCTCTCTCTG
GTCCAGCATAGCACATTTGCCGAGGGACGGCCGGGCAGCAACACGCATGT
AATCTACGGTATGTGGGAAAGCTGTCTGCGTG
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