FC910047

Overview
NameFC910047
Unique NameFC910047
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length882
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_STRPJ (Arginyl-tRNA synthetase OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=argS PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.311e-20
Identity = 64/224 (28.57%), Postives = 113/224 (50.45%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            HV FG+V   +G+ +STRKG VI L  ++ +    +     + E K  ++++ +  A  +G+ AI   D      NGY+FD+E M SFEG+TGPY+QYA+AR+ S+ RK++       N     +   E  E+++ +  +P +        EP  +  +   ++++ +  Y             + +  +SPE+   L   Y +A +VL   ++LLG+   E+M
Sbjct:  359 HVPFGLVTK-EGKKLSTRKGNVILLEPTVAEA---VSRAKVQIEAKNPELENKDQVAHAVGVGAIKFYDLKTDRTNGYDFDLEAMVSFEGETGPYVQYAYARIQSILRKADFKPETAGNYS---LNDTESWEIIKLIQDFPRIINRAADNFEPSIIAKFAISLAQSFNKYY-----------AHTRILDESPERDSRLALSYATA-VVLKEALRLLGVEAPEKM 563          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_STRPI (Arginyl-tRNA synthetase OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=argS PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.311e-20
Identity = 64/224 (28.57%), Postives = 113/224 (50.45%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            HV FG+V   +G+ +STRKG VI L  ++ +    +     + E K  ++++ +  A  +G+ AI   D      NGY+FD+E M SFEG+TGPY+QYA+AR+ S+ RK++       N     +   E  E+++ +  +P +        EP  +  +   ++++ +  Y             + +  +SPE+   L   Y +A +VL   ++LLG+   E+M
Sbjct:  359 HVPFGLVTK-EGKKLSTRKGNVILLEPTVAEA---VSRAKVQIEAKNPELENKDQVAHAVGVGAIKFYDLKTDRTNGYDFDLEAMVSFEGETGPYVQYAYARIQSILRKADFKPETAGNYS---LNDTESWEIIKLIQDFPRIINRAADNFEPSIIAKFAISLAQSFNKYY-----------AHTRILDESPERDSRLALSYATA-VVLKEALRLLGVEAPEKM 563          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_STRP7 (Arginyl-tRNA synthetase OS=Streptococcus pneumoniae (strain 70585) GN=argS PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.311e-20
Identity = 64/224 (28.57%), Postives = 113/224 (50.45%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            HV FG+V   +G+ +STRKG VI L  ++ +    +     + E K  ++++ +  A  +G+ AI   D      NGY+FD+E M SFEG+TGPY+QYA+AR+ S+ RK++       N     +   E  E+++ +  +P +        EP  +  +   ++++ +  Y             + +  +SPE+   L   Y +A +VL   ++LLG+   E+M
Sbjct:  359 HVPFGLVTK-EGKKLSTRKGNVILLEPTVAEA---VSRAKVQIEAKNPELENKDQVAHAVGVGAIKFYDLKTDRTNGYDFDLEAMVSFEGETGPYVQYAYARIQSILRKADFKPETAGNYS---LNDTESWEIIKLIQDFPRIINRAADNFEPSIIAKFAISLAQSFNKYY-----------AHTRILDESPERDSRLALSYATA-VVLKEALRLLGVEAPEKM 563          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_STRP2 (Arginyl-tRNA synthetase OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=argS PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.311e-20
Identity = 64/224 (28.57%), Postives = 113/224 (50.45%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            HV FG+V   +G+ +STRKG VI L  ++ +    +     + E K  ++++ +  A  +G+ AI   D      NGY+FD+E M SFEG+TGPY+QYA+AR+ S+ RK++       N     +   E  E+++ +  +P +        EP  +  +   ++++ +  Y             + +  +SPE+   L   Y +A +VL   ++LLG+   E+M
Sbjct:  359 HVPFGLVTK-EGKKLSTRKGNVILLEPTVAEA---VSRAKVQIEAKNPELENKDQVAHAVGVGAIKFYDLKTDRTNGYDFDLEAMVSFEGETGPYVQYAYARIQSILRKADFKPETAGNYS---LNDTESWEIIKLIQDFPRIINRAADNFEPSIIAKFAISLAQSFNKYY-----------AHTRILDESPERDSRLALSYATA-VVLKEALRLLGVEAPEKM 563          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_SHEAM (Arginyl-tRNA synthetase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=argS PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.311e-20
Identity = 67/224 (29.91%), Postives = 112/224 (50.00%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H+ FG +    G+   TR G V+ L D LD+       +++       + +  E  A ++GI+++   D S   ++ Y F  E+M SFEG+T PYL YA+ R+  + +K+E  + +L NA+  L   KE  EL   LAQ+ ++    +   +P  +  YL++++ A SS Y+A            V+ ADS   + + + L       L  G+ LLG+  +ERM
Sbjct:  372 HMGFGTMNGEDGRPFKTRSGGVVKLVDLLDEAVERAEQLVRSKNPDMDETEVKEI-ARVVGIASVKYADLSKNRSSDYIFSFEQMLSFEGNTAPYLLYAYTRVAGIFKKAE--NIDLTNAELVLDHDKEK-ELGNKLAQFGEILARMVDKGQPHILCGYLYELAGAFSSFYEA----------CPVLSADSETARDSRLLLSRLTADTLKQGLSLLGIETLERM 581          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_STRU0 (Arginyl-tRNA synthetase OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=argS PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.713e-20
Identity = 66/225 (29.33%), Postives = 115/225 (51.11%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDD-VHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            HVSFG+V   K + +STRKG +I L  +LD+ V   +  +  KN D    +++ E  A  +G+ A+   D      NGY+FD+E M SFEG+TGPY+QY +AR+ S+ RK++   +E     +SL  A E  E+++ L  +        +  +P  +  +  +++++ +  Y                  D  E++ + + L  +  +VL   ++LLG+   E+M
Sbjct:  358 HVSFGLVTKNK-KKLSTRKGNIIRLEPTLDEAVSRALTQIEAKNPD----LENKEDVAHAVGVGAVKFYDLKTDRDNGYDFDLEAMVSFEGETGPYVQYTYARIQSILRKADFTPNE--ETPYSLNDA-ESWEIIKLLQGFAANIERAAEKYDPSIIAKFAIQLAQSFNRYY------------AHTRILDESEERDSRLALCYATAVVLKESLRLLGVQAPEKM 562          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_STRP4 (Arginyl-tRNA synthetase OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=argS PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.713e-20
Identity = 64/224 (28.57%), Postives = 113/224 (50.45%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            HV FG+V   +G+ +STRKG VI L  ++ +    +     + E K  ++++ +  A  +G+ AI   D      NGY+FD+E M SFEG+TGPY+QYA+AR+ S+ RK++       N     +   E  E+++ +  +P +        EP  +  +   ++++ +  Y             + +  +SPE+   L   Y +A +VL   ++LLG+   E+M
Sbjct:  359 HVPFGLVTK-EGKKLSTRKGNVILLEPTVAEA---VSRAKVQIEAKNPELENKDQIAHAVGVGAIKFYDLKTDRTNGYDFDLEAMVSFEGETGPYVQYAYARIQSILRKADFKPETAGNYS---LNDTESWEIIKLIQDFPRIINRAADNFEPSIIAKFAISLAQSFNKYY-----------AHTRILDESPERDSRLALSYATA-VVLKEALRLLGVEAPEKM 563          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_SHIDS (Arginyl-tRNA synthetase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=argS PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.713e-20
Identity = 67/225 (29.78%), Postives = 109/225 (48.44%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDD-VHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H  FGM+    G+   TR G  + LAD LD+ +      V +KN D      + E  A+ +GI A+   D S      Y FD + M +FEG+T PY+QYA+ R+ S+ RK+E+D+ +LA A   +   +E  +L   L Q+ +  T   +   P  +  YL+ ++   S  Y+             ++ A++ E + + + L +     L  G+  LG+  VERM
Sbjct:  366 HHMFGMMLGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKNPDM--SADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEEQLAAAPVIIREDREA-QLAARLLQFEETLTVVAREGTPHVMCAYLYDLAGLFSGFYE----------HCPILSAENEEVRNSRLKLAQLTAKTLKLGLDTLGIETVERM 577          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_CYAP8 (Arginyl-tRNA synthetase OS=Cyanothece sp. (strain PCC 8801) GN=argS PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.713e-20
Identity = 68/227 (29.96%), Postives = 115/227 (50.66%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKN--EDKYKQVQDPEAT-ADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            HV FG+VK   G+ + TR GT I L D LD+   +    ++K   E+  ++ +D  A  + ++GISA+   D S    + Y F  ++M + +G+T PY+ YA+AR+ S+ R+  +D   L      ++  +  IEL + L Q  +V     KT  P  +  YL+++SK  +  Y+             V+ ++ P +   L+    +AR  L  G+ LLG+  +ERM
Sbjct:  370 HVPFGLVKGEDGKKLKTRSGTTIKLRDLLDEAVIYARQDLEKRLAEEGRQESEDFIANVSQVVGISAVKYADLSQNRTSDYIFSYDKMLALQGNTAPYMLYAYARIQSISREGNIDFESLQQEAKIILQEETEIELGKYLLQLSEVIEEVEKTLLPNRLCDYLYELSKKFNRFYE----------NCPVLKSEEPLRTSRLLLCDLTAR-TLKLGLSLLGIPVLERM 585          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_CYAA5 (Arginyl-tRNA synthetase OS=Cyanothece sp. (strain ATCC 51142) GN=argS PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.713e-20
Identity = 67/227 (29.52%), Postives = 110/227 (48.46%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKN---EDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            HV FG+VK   G+ + TR G  + L D LD+  N+    ++     ED+ +        A+ +GISA+   D S    + Y F  ++M + +G+T PY+ YA+AR+ S+ R+  +D   L      L+     IEL + L Q  +      K+  P  +  YL+++SK  +  Y+             V+ +D P K   L+    +AR  L  G+ LLG++ +ERM
Sbjct:  370 HVPFGLVKGEDGKKLKTRSGETVKLKDLLDEAVNYARKDLENRLQAEDRKESEDFINHVAETVGISAVKYADLSQNRISDYIFSYDKMLALQGNTAPYMLYAYARIQSISREGNIDYENLGENIQILLKEDTEIELGKYLLQLNETIKEVEKSLLPNRLCDYLYELSKKFNRFYE----------NCPVLKSDEPVKTSRLLLCDLTAR-TLKLGLSLLGISVLERM 585          
The following BLAST results are available for this feature:
BLAST of FC910047 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
SYR_STRPJ1.311e-2028.57Arginyl-tRNA synthetase OS=Streptococcus pneumonia... [more]
SYR_STRPI1.311e-2028.57Arginyl-tRNA synthetase OS=Streptococcus pneumonia... [more]
SYR_STRP71.311e-2028.57Arginyl-tRNA synthetase OS=Streptococcus pneumonia... [more]
SYR_STRP21.311e-2028.57Arginyl-tRNA synthetase OS=Streptococcus pneumonia... [more]
SYR_SHEAM1.311e-2029.91Arginyl-tRNA synthetase OS=Shewanella amazonensis ... [more]
SYR_STRU01.713e-2029.33Arginyl-tRNA synthetase OS=Streptococcus uberis (s... [more]
SYR_STRP41.713e-2028.57Arginyl-tRNA synthetase OS=Streptococcus pneumonia... [more]
SYR_SHIDS1.713e-2029.78Arginyl-tRNA synthetase OS=Shigella dysenteriae se... [more]
SYR_CYAP81.713e-2029.96Arginyl-tRNA synthetase OS=Cyanothece sp. (strain ... [more]
SYR_CYAA51.713e-2029.52Arginyl-tRNA synthetase OS=Cyanothece sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA56BF02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA56BF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910047 ID=FC910047; Name=FC910047; organism=Citrus clementina; type=EST; length=882bp
CAAGTGCGGTCACGTTTCTTTCGGCATGGTCAAGGACCCCAAGGGCCAGA
CCATGAGCACTCGCAAGGGCACTGTCATCTCGCTCGCCGACAGCCTGGAC
GATGTGCACAACTTCATGCACGATGTCATGAAGAAGAACGAAGACAAGTA
CAAGCAGGTCCAGGACCCCGAGGCAACTGCCGACATTCTCGGCATTTCCG
CCATCATGGTGCAGGACTTCAGCGGCAAGATGGCCAACGGCTACAACTTC
GACATGGAGCGCATGACCTCCTTCGAGGGCGACACTGGTCCCTACCTGCA
GTACGCACACGCCCGCCTGTGCTCCATGAAGCGCAAGTCCGAGCTCGATG
ACTCTGAACTCGCCAACGCCGACTTCAGCCTCATCACGGCCAAGGAGGGC
ATCGAGCTCGTCCGCACCCTCGCACAGTGGCCCGACGTCTTCACCAACAC
ACTCAAGACCCAGGAGCCCGTCACCGTCCTCACCTACCTGTTCAAGATGT
CCAAGGCTCTCAGCTCGTGCTACGACGCTAAGGACACCAACAATAAGAAC
GCGAAGACCATGAGTGTCATGTACGCAGACAGCCCCGAGAAGAAGGTTGC
TCTCATGGGCCTGTACGAGAGCGCTAGGATTGTGTTGGCCAACGGCATGA
AGCTGCTCGGTCTCACTCCTGTGGAGAGGATGTAAAAGGGCAGACCGGCA
GTGAGGGATTCAGAAACAAAAGTACGGGACTGGGGAAGACCGAAAGACGA
CTTCCCGGTCATGGCTAAATGTCAGGGACAGCGACGATAAGCTCTCTCTG
GTCCAGCATAGCACATTTGCCGAGGGACGGCCGGGCAGCAACACGCATGT
AATCTACGGTATGTGGGAAAGCTGTCTGCGTG
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