FC910047

Overview
NameFC910047
Unique NameFC910047
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length882
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_PSEF5 (Arginyl-tRNA synthetase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=argS PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.237e-20
Identity = 64/224 (28.57%), Postives = 111/224 (49.55%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H+ FG +    G+   TR G  + L D L +     + ++K+   +  +  D  + A ++GI ++   D S    + Y+F+ + M +FEG+T PYL YA+ R   + RK   D SE+      L  A+E +EL   LAQ+ ++  N  +   P  + TYL+ ++   SS Y+             ++ A++P +  + + L E  R  L  G++LLGL  +E+M
Sbjct:  368 HMGFGTMNGADGRPFKTRDGGTVKLIDLLTEAEERAYALVKEKNPQLPEA-DLRSIAKVVGIDSVKYADLSKHRTSDYSFNFDLMLNFEGNTAPYLLYAYTRAAGVFRKLGKDFSEV-GGQIELHAAQE-LELAAKLAQFGEILNNVAEKGTPHILCTYLYDVAGLFSSFYE----------NCPILAAETPTQMHSRLRLTELTRRTLKQGLELLGLKVLEQM 578          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_EXIS2 (Arginyl-tRNA synthetase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=argS PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.237e-20
Identity = 71/228 (31.14%), Postives = 112/228 (49.12%), Query Frame = 2
Query:   11 HVSFGMV-KDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKN-EDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANA--DFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            HV FG++ KD  G+ MSTRKG ++ L + L D  N    V K+N  +K   + + E TA  +G+ A++  D   +  N   FD+E+M  FEG+TGPY+QY +AR  S+ RK   D S    +  D+S         +V  L Q+  V       +EP  +  Y+  ++++ +  Y              V   +   +K + + L +S  IVL  G++LLG+   E M
Sbjct:  358 HVPFGLIMKD--GKKMSTRKGRIVLLEEVLQDAIN----VAKQNIAEKNPNLANAEQTAREVGVGAVIFHDLKNERMNNIEFDLEQMLKFEGETGPYVQYTNARANSLLRKGAYDGSAFNGSADDYSW-------GVVSMLNQFSAVIDRAFTRREPSIISRYVLDLAQSFNKYYG------------QVRVLEDDAEKQSRLALVKSVTIVLTEGLRLLGVGAPEEM 560          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_ECOUT (Arginyl-tRNA synthetase OS=Escherichia coli (strain UTI89 / UPEC) GN=argS PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.237e-20
Identity = 67/225 (29.78%), Postives = 109/225 (48.44%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDD-VHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H  FGM+    G+   TR G  + LAD LD+ +      V +KN D      + E  A+ +GI A+   D S      Y FD + M +FEG+T PY+QYA+ R+ S+ RK+E+D+ +LA A   +   +E  +L   L Q+ +  T   +   P  +  YL+ ++   S  Y+             ++ A++ E + + + L +     L  G+  LG+  VERM
Sbjct:  366 HHMFGMMLGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKNPDM--PADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEEQLAAAPVIIREDREA-QLAARLLQFEETLTVVAREGTPHVMCAYLYDLAGLFSGFYE----------HCPILSAENEEVRNSRLKLAQLTAKTLKLGLDTLGIETVERM 577          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_ECOSM (Arginyl-tRNA synthetase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=argS PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.237e-20
Identity = 67/225 (29.78%), Postives = 109/225 (48.44%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDD-VHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H  FGM+    G+   TR G  + LAD LD+ +      V +KN D      + E  A+ +GI A+   D S      Y FD + M +FEG+T PY+QYA+ R+ S+ RK+E+D+ +LA A   +   +E  +L   L Q+ +  T   +   P  +  YL+ ++   S  Y+             ++ A++ E + + + L +     L  G+  LG+  VERM
Sbjct:  366 HHMFGMMLGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKNPDM--PADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEEQLAAAPVIIREDREA-QLAARLLQFEETLTVVAREGTPHVMCAYLYDLAGLFSGFYE----------HCPILSAENEEVRNSRLKLAQLTAKTLKLGLDTLGIETVERM 577          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_ECOLU (Arginyl-tRNA synthetase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=argS PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.237e-20
Identity = 67/225 (29.78%), Postives = 109/225 (48.44%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDD-VHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H  FGM+    G+   TR G  + LAD LD+ +      V +KN D      + E  A+ +GI A+   D S      Y FD + M +FEG+T PY+QYA+ R+ S+ RK+E+D+ +LA A   +   +E  +L   L Q+ +  T   +   P  +  YL+ ++   S  Y+             ++ A++ E + + + L +     L  G+  LG+  VERM
Sbjct:  366 HHMFGMMLGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKNPDM--PADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEEQLAAAPVIIREDREA-QLAARLLQFEETLTVVAREGTPHVMCAYLYDLAGLFSGFYE----------HCPILSAENEEVRNSRLKLAQLTAKTLKLGLDTLGIETVERM 577          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_ECOLI (Arginyl-tRNA synthetase OS=Escherichia coli (strain K12) GN=argS PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.237e-20
Identity = 67/225 (29.78%), Postives = 109/225 (48.44%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDD-VHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H  FGM+    G+   TR G  + LAD LD+ +      V +KN D      + E  A+ +GI A+   D S      Y FD + M +FEG+T PY+QYA+ R+ S+ RK+E+D+ +LA A   +   +E  +L   L Q+ +  T   +   P  +  YL+ ++   S  Y+             ++ A++ E + + + L +     L  G+  LG+  VERM
Sbjct:  366 HHMFGMMLGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKNPDM--PADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEEQLAAAPVIIREDREA-QLAARLLQFEETLTVVAREGTPHVMCAYLYDLAGLFSGFYE----------HCPILSAENEEVRNSRLKLAQLTAKTLKLGLDTLGIETVERM 577          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_ECOK1 (Arginyl-tRNA synthetase OS=Escherichia coli O1:K1 / APEC GN=argS PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.237e-20
Identity = 67/225 (29.78%), Postives = 109/225 (48.44%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDD-VHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H  FGM+    G+   TR G  + LAD LD+ +      V +KN D      + E  A+ +GI A+   D S      Y FD + M +FEG+T PY+QYA+ R+ S+ RK+E+D+ +LA A   +   +E  +L   L Q+ +  T   +   P  +  YL+ ++   S  Y+             ++ A++ E + + + L +     L  G+  LG+  VERM
Sbjct:  366 HHMFGMMLGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKNPDM--PADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEEQLAAAPVIIREDREA-QLAARLLQFEETLTVVAREGTPHVMCAYLYDLAGLFSGFYE----------HCPILSAENEEVRNSRLKLAQLTAKTLKLGLDTLGIETVERM 577          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_ECODH (Arginyl-tRNA synthetase OS=Escherichia coli (strain K12 / DH10B) GN=argS PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.237e-20
Identity = 67/225 (29.78%), Postives = 109/225 (48.44%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDD-VHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H  FGM+    G+   TR G  + LAD LD+ +      V +KN D      + E  A+ +GI A+   D S      Y FD + M +FEG+T PY+QYA+ R+ S+ RK+E+D+ +LA A   +   +E  +L   L Q+ +  T   +   P  +  YL+ ++   S  Y+             ++ A++ E + + + L +     L  G+  LG+  VERM
Sbjct:  366 HHMFGMMLGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKNPDM--PADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEEQLAAAPVIIREDREA-QLAARLLQFEETLTVVAREGTPHVMCAYLYDLAGLFSGFYE----------HCPILSAENEEVRNSRLKLAQLTAKTLKLGLDTLGIETVERM 577          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_ECOBW (Arginyl-tRNA synthetase OS=Escherichia coli (strain K12 / BW2952) GN=argS PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.237e-20
Identity = 67/225 (29.78%), Postives = 109/225 (48.44%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDD-VHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H  FGM+    G+   TR G  + LAD LD+ +      V +KN D      + E  A+ +GI A+   D S      Y FD + M +FEG+T PY+QYA+ R+ S+ RK+E+D+ +LA A   +   +E  +L   L Q+ +  T   +   P  +  YL+ ++   S  Y+             ++ A++ E + + + L +     L  G+  LG+  VERM
Sbjct:  366 HHMFGMMLGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKNPDM--PADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEEQLAAAPVIIREDREA-QLAARLLQFEETLTVVAREGTPHVMCAYLYDLAGLFSGFYE----------HCPILSAENEEVRNSRLKLAQLTAKTLKLGLDTLGIETVERM 577          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_ECO7I (Arginyl-tRNA synthetase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=argS PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.237e-20
Identity = 67/225 (29.78%), Postives = 109/225 (48.44%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDD-VHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H  FGM+    G+   TR G  + LAD LD+ +      V +KN D      + E  A+ +GI A+   D S      Y FD + M +FEG+T PY+QYA+ R+ S+ RK+E+D+ +LA A   +   +E  +L   L Q+ +  T   +   P  +  YL+ ++   S  Y+             ++ A++ E + + + L +     L  G+  LG+  VERM
Sbjct:  366 HHMFGMMLGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKNPDM--PADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEEQLAAAPVIIREDREA-QLAARLLQFEETLTVVAREGTPHVMCAYLYDLAGLFSGFYE----------HCPILSAENEEVRNSRLKLAQLTAKTLKLGLDTLGIETVERM 577          
The following BLAST results are available for this feature:
BLAST of FC910047 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
SYR_PSEF52.237e-2028.57Arginyl-tRNA synthetase OS=Pseudomonas fluorescens... [more]
SYR_EXIS22.237e-2031.14Arginyl-tRNA synthetase OS=Exiguobacterium sibiric... [more]
SYR_ECOUT2.237e-2029.78Arginyl-tRNA synthetase OS=Escherichia coli (strai... [more]
SYR_ECOSM2.237e-2029.78Arginyl-tRNA synthetase OS=Escherichia coli (strai... [more]
SYR_ECOLU2.237e-2029.78Arginyl-tRNA synthetase OS=Escherichia coli O17:K5... [more]
SYR_ECOLI2.237e-2029.78Arginyl-tRNA synthetase OS=Escherichia coli (strai... [more]
SYR_ECOK12.237e-2029.78Arginyl-tRNA synthetase OS=Escherichia coli O1:K1 ... [more]
SYR_ECODH2.237e-2029.78Arginyl-tRNA synthetase OS=Escherichia coli (strai... [more]
SYR_ECOBW2.237e-2029.78Arginyl-tRNA synthetase OS=Escherichia coli (strai... [more]
SYR_ECO7I2.237e-2029.78Arginyl-tRNA synthetase OS=Escherichia coli O7:K1 ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA56BF02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA56BF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910047 ID=FC910047; Name=FC910047; organism=Citrus clementina; type=EST; length=882bp
CAAGTGCGGTCACGTTTCTTTCGGCATGGTCAAGGACCCCAAGGGCCAGA
CCATGAGCACTCGCAAGGGCACTGTCATCTCGCTCGCCGACAGCCTGGAC
GATGTGCACAACTTCATGCACGATGTCATGAAGAAGAACGAAGACAAGTA
CAAGCAGGTCCAGGACCCCGAGGCAACTGCCGACATTCTCGGCATTTCCG
CCATCATGGTGCAGGACTTCAGCGGCAAGATGGCCAACGGCTACAACTTC
GACATGGAGCGCATGACCTCCTTCGAGGGCGACACTGGTCCCTACCTGCA
GTACGCACACGCCCGCCTGTGCTCCATGAAGCGCAAGTCCGAGCTCGATG
ACTCTGAACTCGCCAACGCCGACTTCAGCCTCATCACGGCCAAGGAGGGC
ATCGAGCTCGTCCGCACCCTCGCACAGTGGCCCGACGTCTTCACCAACAC
ACTCAAGACCCAGGAGCCCGTCACCGTCCTCACCTACCTGTTCAAGATGT
CCAAGGCTCTCAGCTCGTGCTACGACGCTAAGGACACCAACAATAAGAAC
GCGAAGACCATGAGTGTCATGTACGCAGACAGCCCCGAGAAGAAGGTTGC
TCTCATGGGCCTGTACGAGAGCGCTAGGATTGTGTTGGCCAACGGCATGA
AGCTGCTCGGTCTCACTCCTGTGGAGAGGATGTAAAAGGGCAGACCGGCA
GTGAGGGATTCAGAAACAAAAGTACGGGACTGGGGAAGACCGAAAGACGA
CTTCCCGGTCATGGCTAAATGTCAGGGACAGCGACGATAAGCTCTCTCTG
GTCCAGCATAGCACATTTGCCGAGGGACGGCCGGGCAGCAACACGCATGT
AATCTACGGTATGTGGGAAAGCTGTCTGCGTG
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