FC910047

Overview
NameFC910047
Unique NameFC910047
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length882
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5818 contig Ccv1_Contig5818:1..882. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_ECO5E (Arginyl-tRNA synthetase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=argS PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.237e-20
Identity = 67/225 (29.78%), Postives = 109/225 (48.44%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDD-VHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H  FGM+    G+   TR G  + LAD LD+ +      V +KN D      + E  A+ +GI A+   D S      Y FD + M +FEG+T PY+QYA+ R+ S+ RK+E+D+ +LA A   +   +E  +L   L Q+ +  T   +   P  +  YL+ ++   S  Y+             ++ A++ E + + + L +     L  G+  LG+  VERM
Sbjct:  366 HHMFGMMLGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKNPDM--PADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEEQLAAAPVIIREDREA-QLAARLLQFEETLTVVAREGTPHVMCAYLYDLAGLFSGFYE----------HCPILSAENEEVRNSRLKLAQLTAKTLKLGLDTLGIETVERM 577          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_ECO57 (Arginyl-tRNA synthetase OS=Escherichia coli O157:H7 GN=argS PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.237e-20
Identity = 67/225 (29.78%), Postives = 109/225 (48.44%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDD-VHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H  FGM+    G+   TR G  + LAD LD+ +      V +KN D      + E  A+ +GI A+   D S      Y FD + M +FEG+T PY+QYA+ R+ S+ RK+E+D+ +LA A   +   +E  +L   L Q+ +  T   +   P  +  YL+ ++   S  Y+             ++ A++ E + + + L +     L  G+  LG+  VERM
Sbjct:  366 HHMFGMMLGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKNPDM--PADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEEQLAAAPVIIREDREA-QLAARLLQFEETLTVVAREGTPHVMCAYLYDLAGLFSGFYE----------HCPILSAENEEVRNSRLKLAQLTAKTLKLGLDTLGIETVERM 577          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_ECO45 (Arginyl-tRNA synthetase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=argS PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.237e-20
Identity = 67/225 (29.78%), Postives = 109/225 (48.44%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDD-VHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H  FGM+    G+   TR G  + LAD LD+ +      V +KN D      + E  A+ +GI A+   D S      Y FD + M +FEG+T PY+QYA+ R+ S+ RK+E+D+ +LA A   +   +E  +L   L Q+ +  T   +   P  +  YL+ ++   S  Y+             ++ A++ E + + + L +     L  G+  LG+  VERM
Sbjct:  366 HHMFGMMLGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKNPDM--PADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEEQLAAAPVIIREDREA-QLAARLLQFEETLTVVAREGTPHVMCAYLYDLAGLFSGFYE----------HCPILSAENEEVRNSRLKLAQLTAKTLKLGLDTLGIETVERM 577          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_CITK8 (Arginyl-tRNA synthetase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=argS PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.237e-20
Identity = 67/225 (29.78%), Postives = 110/225 (48.89%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDD-VHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H  FGM+    G+   TR G  + LAD LD+ +      V +KN D      + E  A+ +GI A+   D S      Y FD + M +FEG+T PY+QYA+ R+ S+ RK+E+D+S L++A   +   +E  +L   L Q+ +  T   +   P  +  YL+ ++   S  Y+             ++ A++ E + + + L +     L  G+  LG+  VERM
Sbjct:  366 HHMFGMMLGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKNPDM--PADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDESALSSAPVVIREDREA-QLAARLLQFEETLTVVAREGTPHVMCAYLYDIAGLFSGFYE----------HCPILSAENEEVRNSRLKLAQLTAKTLKLGLDTLGIETVERM 577          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR2_BACAN (Arginyl-tRNA synthetase 2 OS=Bacillus anthracis GN=argS2 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.237e-20
Identity = 68/226 (30.09%), Postives = 111/226 (49.12%), Query Frame = 2
Query:   11 HVSFGMV-KDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKN-EDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            HV FG + KD  G+ MSTRKG VI L + L++      ++ K+N E+K   ++  E  A  +G  A++  D   +  +   F +E M  FEG+TGPY+QY HAR CS+ RK  +   E     F+L        +V+ L ++P V        EP  +  Y+  ++++ +  Y             +V   +  E+K + + L  +  +VL  G++LLG+   E M
Sbjct:  359 HVPFGFILKD--GKKMSTRKGRVILLEEVLEEAI----ELAKQNIEEKNPNLKQKEEVAKQVGAGAVIFHDLKNERMHNIEFSLENMLKFEGETGPYVQYTHARACSILRKESV---EFETCTFAL-KDDHSWSVVKLLNKFPQVIEIAFNKNEPSVISKYVLDVAQSFNKYYG------------NVRILEESEEKDSRLALVYAVTVVLKEGLRLLGVEAPEEM 562          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_SHEPA (Arginyl-tRNA synthetase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=argS PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.921e-20
Identity = 68/224 (30.36%), Postives = 114/224 (50.89%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H+ FG +    G+   TR G V+ L D L +      D+++       + +  E  A ++GI+++   D S   A+ Y F  E+M SFEG+T PYL YA+ R+  + ++++  D +L++A   L   KE  +L   LAQ+ +V    +   +P  +  YLF+++ A SS Y+A            V+ A++ E K + + L +     L  G+ LLGL  +ERM
Sbjct:  372 HMGFGTMNGEDGRPFKTRSGGVVKLIDLLKEADIRALDLVRSKNPDMDEAELAEI-ARVVGIASVKYADLSKNRASDYIFSFEQMLSFEGNTAPYLLYAYTRVAGIFKRAQ--DVDLSDAKIILEHEKEK-DLGTKLAQFGEVMARMVSKGQPHALCGYLFELAGAFSSFYEA----------CPVLAAETEELKKSRLLLSQLTAKTLKQGLNLLGLETLERM 581          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_SHEB9 (Arginyl-tRNA synthetase OS=Shewanella baltica (strain OS195) GN=argS PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.921e-20
Identity = 69/225 (30.67%), Postives = 115/225 (51.11%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSM-KRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H+ FG +    G+   TR G V+ L D L++ +    ++++       +V   E  A ++GISA+   D S    + Y F  E+M SFEG+T PYL YA+ R+  + KR ++LD   L+ A   L   KE  +L   LAQ+ ++ +  +   +P  +  YL++++ A SS Y+A            V+ AD+  +K + + L +     L  G+ LLG+  +ERM
Sbjct:  372 HLGFGTMNGEDGRPFKTRSGGVVKLVDLLEEANVRALELVRSKNPDMDEVTLTEI-ARVVGISAVKYADLSKNRTSDYIFSFEQMLSFEGNTAPYLLYAYTRVAGIFKRVTDLD---LSQAKIVLEHEKEK-DLGNKLAQFGEILSRVVDKGQPHVLCAYLYELAGAFSSFYEA----------CPVLAADNDAQKNSRLLLAQLTARTLQKGLNLLGIETLERM 581          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_SHEB8 (Arginyl-tRNA synthetase OS=Shewanella baltica (strain OS185) GN=argS PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.921e-20
Identity = 69/225 (30.67%), Postives = 115/225 (51.11%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSM-KRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H+ FG +    G+   TR G V+ L D L++ +    ++++       +V   E  A ++GISA+   D S    + Y F  E+M SFEG+T PYL YA+ R+  + KR ++LD   L+ A   L   KE  +L   LAQ+ ++ +  +   +P  +  YL++++ A SS Y+A            V+ AD+  +K + + L +     L  G+ LLG+  +ERM
Sbjct:  372 HLGFGTMNGEDGRPFKTRSGGVVKLVDLLEEANVRALELVRSKNPDMDEVTLTEI-ARVVGISAVKYADLSKNRTSDYIFSFEQMLSFEGNTAPYLLYAYTRVAGIFKRVTDLD---LSQAKIVLEHEKEK-DLGNKLAQFGEILSRVVDKGQPHVLCAYLYELAGAFSSFYEA----------CPVLAADNDAQKNSRLLLAQLTARTLQKGLNLLGIETLERM 581          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_SHEB2 (Arginyl-tRNA synthetase OS=Shewanella baltica (strain OS223) GN=argS PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.921e-20
Identity = 69/225 (30.67%), Postives = 115/225 (51.11%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSM-KRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H+ FG +    G+   TR G V+ L D L++ +    ++++       +V   E  A ++GISA+   D S    + Y F  E+M SFEG+T PYL YA+ R+  + KR ++LD   L+ A   L   KE  +L   LAQ+ ++ +  +   +P  +  YL++++ A SS Y+A            V+ AD+  +K + + L +     L  G+ LLG+  +ERM
Sbjct:  372 HLGFGTMNGEDGRPFKTRSGGVVKLVDLLEEANVRALELVRSKNPDMDEVTLTEI-ARVVGISAVKYADLSKNRTSDYIFSFEQMLSFEGNTAPYLLYAYTRVAGIFKRVTDLD---LSQAKIVLEHEKEK-DLGNKLAQFGEILSRVVDKGQPHVLCAYLYELAGAFSSFYEA----------CPVLAADNDAQKNSRLLLAQLTARTLQKGLNLLGIETLERM 581          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_STRS7 (Arginyl-tRNA synthetase OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=argS PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.815e-20
Identity = 68/224 (30.36%), Postives = 111/224 (49.55%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            HV+FG+V    G  +STRKG VI L  ++ +    +     + E K  ++ + EA A  +G+ AI   D      NGY+FD+E M SFEG+TGPY+QYAHAR+ S+ RK+    +   +  +SL    E  E+++ +  +P +        EP  +  +   ++++ +  Y             + +  D PE+   L   Y +A IVL   ++LLG+     M
Sbjct:  359 HVAFGLVTKG-GAKLSTRKGNVILLEPTVAEA---ISRAANQIEAKNPKLANKEAVAHAVGVGAIKFYDLKTDRMNGYDFDLEAMVSFEGETGPYVQYAHARIQSILRKASF--TPAVDTSYSL-NDPESWEIIKLIQDFPRIIKRAFDNFEPSIMAKFAIHLAQSFNKYY-----------AHTRILEDDPERDNRLALCYATA-IVLKEALRLLGVEAPNEM 563          
The following BLAST results are available for this feature:
BLAST of FC910047 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
SYR_ECO5E2.237e-2029.78Arginyl-tRNA synthetase OS=Escherichia coli O157:H... [more]
SYR_ECO572.237e-2029.78Arginyl-tRNA synthetase OS=Escherichia coli O157:H... [more]
SYR_ECO452.237e-2029.78Arginyl-tRNA synthetase OS=Escherichia coli O45:K1... [more]
SYR_CITK82.237e-2029.78Arginyl-tRNA synthetase OS=Citrobacter koseri (str... [more]
SYR2_BACAN2.237e-2030.09Arginyl-tRNA synthetase 2 OS=Bacillus anthracis GN... [more]
SYR_SHEPA2.921e-2030.36Arginyl-tRNA synthetase OS=Shewanella pealeana (st... [more]
SYR_SHEB92.921e-2030.67Arginyl-tRNA synthetase OS=Shewanella baltica (str... [more]
SYR_SHEB82.921e-2030.67Arginyl-tRNA synthetase OS=Shewanella baltica (str... [more]
SYR_SHEB22.921e-2030.67Arginyl-tRNA synthetase OS=Shewanella baltica (str... [more]
SYR_STRS73.815e-2030.36Arginyl-tRNA synthetase OS=Streptococcus equi subs... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA56BF02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA56BF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910047 ID=FC910047; Name=FC910047; organism=Citrus clementina; type=EST; length=882bp
CAAGTGCGGTCACGTTTCTTTCGGCATGGTCAAGGACCCCAAGGGCCAGA
CCATGAGCACTCGCAAGGGCACTGTCATCTCGCTCGCCGACAGCCTGGAC
GATGTGCACAACTTCATGCACGATGTCATGAAGAAGAACGAAGACAAGTA
CAAGCAGGTCCAGGACCCCGAGGCAACTGCCGACATTCTCGGCATTTCCG
CCATCATGGTGCAGGACTTCAGCGGCAAGATGGCCAACGGCTACAACTTC
GACATGGAGCGCATGACCTCCTTCGAGGGCGACACTGGTCCCTACCTGCA
GTACGCACACGCCCGCCTGTGCTCCATGAAGCGCAAGTCCGAGCTCGATG
ACTCTGAACTCGCCAACGCCGACTTCAGCCTCATCACGGCCAAGGAGGGC
ATCGAGCTCGTCCGCACCCTCGCACAGTGGCCCGACGTCTTCACCAACAC
ACTCAAGACCCAGGAGCCCGTCACCGTCCTCACCTACCTGTTCAAGATGT
CCAAGGCTCTCAGCTCGTGCTACGACGCTAAGGACACCAACAATAAGAAC
GCGAAGACCATGAGTGTCATGTACGCAGACAGCCCCGAGAAGAAGGTTGC
TCTCATGGGCCTGTACGAGAGCGCTAGGATTGTGTTGGCCAACGGCATGA
AGCTGCTCGGTCTCACTCCTGTGGAGAGGATGTAAAAGGGCAGACCGGCA
GTGAGGGATTCAGAAACAAAAGTACGGGACTGGGGAAGACCGAAAGACGA
CTTCCCGGTCATGGCTAAATGTCAGGGACAGCGACGATAAGCTCTCTCTG
GTCCAGCATAGCACATTTGCCGAGGGACGGCCGGGCAGCAACACGCATGT
AATCTACGGTATGTGGGAAAGCTGTCTGCGTG
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