FC910645

Overview
NameFC910645
Unique NameFC910645
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length924
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC910645 vs. ExPASy Swiss-Prot
Match: AP2L4_ARATH (AP2-like ethylene-responsive transcription factor At2g41710 OS=Arabidopsis thaliana GN=At2g41710 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 7.182e-25
Identity = 51/66 (77.27%), Postives = 57/66 (86.36%), Query Frame = 2 
Query:  707 TFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWG 904
            T G+R+SIYRGVTRHRWTGRYEAHLWD S   + Q++KG+QVYLG YD EE AARAYDLAALKYWG
Sbjct:   63 TAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLAALKYWG 128
[Close]
BLAST of FC910645 vs. ExPASy Swiss-Prot
Match: AP2L1_ARATH (AP2-like ethylene-responsive transcription factor At1g16060 OS=Arabidopsis thaliana GN=At1g16060 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.564e-24
Identity = 49/65 (75.38%), Postives = 57/65 (87.69%), Query Frame = 2 
Query:  716 QRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGSD 910
            QR+S++RGVTRHRWTGRYEAHLWD +   E Q++KGRQVYLG YD+E+ AARAYDLAALKYWG D
Sbjct:   54 QRSSVHRGVTRHRWTGRYEAHLWDKNSWNETQTKKGRQVYLGAYDEEDAAARAYDLAALKYWGRD 118
[Close]
BLAST of FC910645 vs. ExPASy Swiss-Prot
Match: AP2L3_ARATH (AP2-like ethylene-responsive transcription factor At1g79700 OS=Arabidopsis thaliana GN=At1g79700 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.655e-24
Identity = 50/65 (76.92%), Postives = 56/65 (86.15%), Query Frame = 2 
Query:  716 QRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGSD 910
            QR+S YRGVTRHRWTGRYEAHLWD +   + Q++KGRQVYLG YD+EE AARAYDLAALKYWG D
Sbjct:   48 QRSSPYRGVTRHRWTGRYEAHLWDKNSWNDTQTKKGRQVYLGAYDEEEAAARAYDLAALKYWGRD 112
[Close]
BLAST of FC910645 vs. ExPASy Swiss-Prot
Match: WRI1_ARATH (Ethylene-responsive transcription factor WRI1 OS=Arabidopsis thaliana GN=WRI1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.554e-22
Identity = 47/65 (72.31%), Postives = 53/65 (81.54%), Query Frame = 2 
Query:  716 QRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGSD 910
            +R+SIYRGVTRHRWTGR+EAHLWD S     Q++KG+QVYLG YD EE AA  YDLAALKYWG D
Sbjct:   61 RRSSIYRGVTRHRWTGRFEAHLWDKSSWNSIQNKKGKQVYLGAYDSEEAAAHTYDLAALKYWGPD 125
The following BLAST results are available for this feature:
BLAST of FC910645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
AP2L4_ARATH7.182e-2577.27AP2-like ethylene-responsive transcription factor ... [more]
AP2L1_ARATH3.564e-2475.38AP2-like ethylene-responsive transcription factor ... [more]
AP2L3_ARATH4.655e-2476.92AP2-like ethylene-responsive transcription factor ... [more]
WRI1_ARATH2.554e-2272.31Ethylene-responsive transcription factor WRI1 OS=A... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA22CC06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22CC06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910645 ID=FC910645; Name=FC910645; organism=Citrus clementina; type=EST; length=924bp
CTTTCAAAGACAGCACAAAATTTTCTCTCTTTCTTTCCTTCCACTATTTC
CAAAGAAACAAACACCCCTCCTCTTTTTCTCTCTCGTCTCGCTTTCTTAT
TTCACACTCACCGATACAGCACAAAGCAAAATGAATAATAATAATAATAA
TAATATGAACGTCAACCTAAGCAGCAGCAGCAGCAGCAGCAACAGTATCA
ATATGGATCATTCCGCTTGGCTTGGCTTCTCTCTTTCCAATAACAACTTG
CAAACTTCCTCCACTTCTGATCCTGAATCCTCTCACATCTGCCTCTTTGA
AGCCTTCACCACCGCCGCCACTGCCACCACCGCCTCAGGTAGTACTATTA
ATTTAGCAAGAGGAGGAGGAGGAGAAGCAACTGGGATAGCAAGTGCAACA
GACTTATCTATATTCACGGGCAGCCCTAAACTTGAAGATTTTCTTGGGGG
TTCATGCACCGCTACGCCACCGCAGCCGCCACAAGTGCAACTAGGTCATC
ATCATCTTTCCAGTGCAACGACTGCTCATGAGATTTATGACTCCGAGCTC
AAAACAATAGCCGCTAGCTTCCTTCGCGGCTTTGCCACCGAACAAACAGA
CATCCACCATCAGCAGCAGCAGCAGCAGCAGCACCTAAAACACCACCACC
AACAACAACAACTAGTGCCGCTTGTTGCACAGCCCGCGCCTAAGAAAACA
GTTGATACTTTCGGCCAACGCACCTCTATTTACCGAGGGGTCACTAGACA
TAGATGGACGGGGAGGTATGAAGCTCACTTGTGGGATAACAGCTGCAGAA
GAGAAGGCCAAAGTAGAAAAGGAAGACAAGTTTATTTGGGTGGCTATGAT
AAAGAAGAGAAAGCAGCTAGAGCTTACGATCTTGCAGCTCTCAAATACTG
GGGGTCCGACCACTACTACAAAAT
back to top