FC910658

Overview
NameFC910658
Unique NameFC910658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1008
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC910658 vs. ExPASy Swiss-Prot
Match: LIPA_ANAPZ (Lipoyl synthase OS=Anaplasma phagocytophilum (strain HZ) GN=lipA PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 9.341e-53
Identity = 105/240 (43.75%), Postives = 151/240 (62.92%), Query Frame = 2
Query:  257 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRASKRHI 976
            W++  +PGG+ + +++  ++  +L+TVCEEA CPN+GECW+        ATIM++GD CTR C FCNVKT              V EAI+  GL +VVITSVDRDDL D G+ HFA+ +R++++  PN+ IE L PDF+G  G V  +A +  +V+ HN+ETV  L + VR  RA +  SL +L   KD    G  TK+ +MLG GE  ++V   M+ +R AGVD +  GQY++ +K +I
Sbjct:    7 WLRVKMPGGEVFEEVRDLVKRQRLNTVCEEAACPNIGECWNKRH-----ATIMVMGDVCTRACAFCNVKTG-VPRALDLGEPERVGEAISKLGLKHVVITSVDRDDLPDGGASHFAKCIREIRKRDPNVTIEILTPDFQGKPGAVDVIASARPDVYNHNLETVPRLYARVRP-RAKYFNSLQLLQQVKDKT-QGVFTKSGLMLGLGEQKEEVYQVMDDLRCAGVDFLVLGQYLQPTKDNI 238          
BLAST of FC910658 vs. ExPASy Swiss-Prot
Match: LIPA_RUBXD (Lipoyl synthase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=lipA PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.220e-52
Identity = 107/240 (44.58%), Postives = 149/240 (62.08%), Query Frame = 2
Query:  257 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRASKRHI 976
            W+K  +P G  Y +IK+ +R L LHTVCEEA+CPN+GECW+       TAT MILG+ CTR C FC V T R            VA+A+   GL + VITSV+RD+L D G+  FA T+R ++   P   +E L PDF+G+   ++ V  +  + F HNIETV  L  AVR  +A + +SL+VL  AK+  P G LTK+  M+G GE  +++V TM  +R  GVD++T GQY+R ++ H+
Sbjct:   36 WLKARVPDGPGYREIKETMRGLSLHTVCEEARCPNIGECWNN-----RTATFMILGNVCTRSCGFCAVLTGRPQELDLEEPY-RVADAVKKMGLRHAVITSVNRDELPDGGASVFAATIRAIRREVPGCAVEVLTPDFKGDRDAIKTVIDARPDTFNHNIETVPRLYPAVRP-QAKYGRSLEVLRYAKELDP-GVLTKSGFMVGLGEVEEEIVRTMRDLREHGVDILTIGQYLRPTENHL 267          
BLAST of FC910658 vs. ExPASy Swiss-Prot
Match: LIPA_BACHD (Lipoyl synthase OS=Bacillus halodurans GN=lipA PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 7.908e-52
Identity = 110/248 (44.35%), Postives = 152/248 (61.29%), Query Frame = 2
Query:  257 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRASKRHIARV*IHHP 1000
            W+K  +   + Y  +KK +RE  LHTVCEEAKCPN+ ECW+  +T    AT MILGD CTR CRFC VKT              VAE++   GL + VIT+V RDDL D G+G FA+TVR ++   P   IE L  D  GN+  ++ +  +  N+  HNIETV  L   VR  RA +++SL+ L  AK+  P    TK+S+M+G GET D+++ TM+ +RA  VD+MT GQY++ +K+H+     +HP
Sbjct:   13 WLKIKLNTNETYTGLKKMMREKNLHTVCEEAKCPNIHECWAVRKT----ATFMILGDVCTRACRFCAVKTG-LPNELDLQEPERVAESVEIMGLKHAVITAVARDDLKDGGAGVFAETVRAVRRRNPFCTIEVLPSDMMGNDDNLKTLMDARPNILNHNIETVRRLTPRVR-ARATYERSLEFLRRAKEMQP-DIPTKSSLMIGLGETKDEIIETMDDLRANNVDIMTIGQYLQPTKKHLKVQKYYHP 253          
BLAST of FC910658 vs. ExPASy Swiss-Prot
Match: LIPA_PSEAE (Lipoyl synthase OS=Pseudomonas aeruginosa GN=lipA PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.349e-51
Identity = 114/249 (45.78%), Postives = 156/249 (62.65%), Query Frame = 2
Query:  257 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREV-AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRASKRHIARV*IHHP 1000
            W++  IP   +  +IK+ LR+ KLH+VCEEA CPNLGEC+SGG     TAT MI+GD CTR C FC+V   R          TN+A AIA   L YVVITSVDRDDL D G+ HFA  +R++++L P + +E LVPD+RG      E+ A    +VF HN+ETV  L  + R   ++F+ SLD+L   K  VP    TK+ +MLG GET D+V+  M+++R   +D++T GQY++ S+ H+      HP
Sbjct:   47 WIRVRIPVSPEVDRIKQLLRKHKLHSVCEEASCPNLGECFSGG-----TATFMIMGDICTRRCPFCDVGHGRPKPLDVDEP-TNLAIAIADLRLKYVVITSVDRDDLRDGGAQHFADCLREIRKLSPGIQLETLVPDYRGRMDIALEITANEPPDVFNHNLETVPRLYRSSRP-GSDFEWSLDLLQKFKQMVP-HVPTKSGLMLGLGETDDEVIEVMQRMREHDIDMLTLGQYLQPSRNHLPVQRFVHP 287          
BLAST of FC910658 vs. ExPASy Swiss-Prot
Match: LIPA_PSEAB (Lipoyl synthase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=lipA PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.349e-51
Identity = 114/249 (45.78%), Postives = 156/249 (62.65%), Query Frame = 2
Query:  257 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREV-AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRASKRHIARV*IHHP 1000
            W++  IP   +  +IK+ LR+ KLH+VCEEA CPNLGEC+SGG     TAT MI+GD CTR C FC+V   R          TN+A AIA   L YVVITSVDRDDL D G+ HFA  +R++++L P + +E LVPD+RG      E+ A    +VF HN+ETV  L  + R   ++F+ SLD+L   K  VP    TK+ +MLG GET D+V+  M+++R   +D++T GQY++ S+ H+      HP
Sbjct:   47 WIRVRIPVSPEVDRIKQLLRKHKLHSVCEEASCPNLGECFSGG-----TATFMIMGDICTRRCPFCDVGHGRPKPLDVDEP-TNLAIAIADLRLKYVVITSVDRDDLRDGGAQHFADCLREIRKLSPGIQLETLVPDYRGRMDIALEITANEPPDVFNHNLETVPRLYRSSRP-GSDFEWSLDLLQKFKQMVP-HVPTKSGLMLGLGETDDEVIEVMQRMREHDIDMLTLGQYLQPSRNHLPVQRFVHP 287          
BLAST of FC910658 vs. ExPASy Swiss-Prot
Match: LIPA_PSEA8 (Lipoyl synthase OS=Pseudomonas aeruginosa (strain LESB58) GN=lipA PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.349e-51
Identity = 114/249 (45.78%), Postives = 156/249 (62.65%), Query Frame = 2
Query:  257 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREV-AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRASKRHIARV*IHHP 1000
            W++  IP   +  +IK+ LR+ KLH+VCEEA CPNLGEC+SGG     TAT MI+GD CTR C FC+V   R          TN+A AIA   L YVVITSVDRDDL D G+ HFA  +R++++L P + +E LVPD+RG      E+ A    +VF HN+ETV  L  + R   ++F+ SLD+L   K  VP    TK+ +MLG GET D+V+  M+++R   +D++T GQY++ S+ H+      HP
Sbjct:   47 WIRVRIPVSPEVDRIKQLLRKHKLHSVCEEASCPNLGECFSGG-----TATFMIMGDICTRRCPFCDVGHGRPKPLDVDEP-TNLAIAIADLRLKYVVITSVDRDDLRDGGAQHFADCLREIRKLSPGIQLETLVPDYRGRMDIALEITANEPPDVFNHNLETVPRLYRSSRP-GSDFEWSLDLLQKFKQMVP-HVPTKSGLMLGLGETDDEVIEVMQRMREHDIDMLTLGQYLQPSRNHLPVQRFVHP 287          
BLAST of FC910658 vs. ExPASy Swiss-Prot
Match: LIPA_BACSK (Lipoyl synthase OS=Bacillus clausii (strain KSM-K16) GN=lipA PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.349e-51
Identity = 108/248 (43.55%), Postives = 154/248 (62.10%), Query Frame = 2
Query:  257 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRASKRHIARV*IHHP 1000
            W+K  +   + Y  +KK +RE KLHTVCEEA+CPN+ ECW+  +T    AT MILGD CTRGCRFC VKT              VAE++ + GL +VVIT+V RDDL D G+  FA+TVR ++   P   IE L  D  GN   ++ +  +  N+  HNIETV  L   VR  RA + ++L+ L  AK+  P    TK+S+M+G GET ++++ TM+ +RA  VD++T GQY++ +K+H+  +  +HP
Sbjct:   16 WLKIKLNTNESYTGLKKMMREKKLHTVCEEARCPNIHECWAVRKT----ATFMILGDICTRGCRFCAVKTG-LPTELDLQEPERVAESVETMGLKHVVITAVARDDLKDGGAAVFAETVRAVRRKNPFCTIEVLPSDMLGNESSLQTLMDARPNIMNHNIETVRRLTPKVR-ARAKYDRTLEFLRRAKEMHP-DIPTKSSLMVGLGETKEEILETMDDLRANNVDILTIGQYLQPTKKHLKVIKYYHP 256          
BLAST of FC910658 vs. ExPASy Swiss-Prot
Match: LIPA_PYRAE (Probable lipoyl synthase OS=Pyrobaculum aerophilum GN=lipA PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.762e-51
Identity = 110/240 (45.83%), Postives = 149/240 (62.08%), Query Frame = 2
Query:  269 SIPGGD--KYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMR--ASKRHI 976
            S+  GD  K + +++ L    ++TVCE AKCPN+  CW     G  TAT MILG+ CTR CRFC V+T              + EA+   GL YVV+TSV RDDL D G+  FA  V+KL+E+    ++E LVPDF G+   V+ V  SG +VFAHN+ETV  L   VRD RA +++SL VL  AK++     LTK+ +MLG GET ++VV T+E +R A VD++T GQY++   S RH+
Sbjct:    7 SLRAGDYEKIINVRRALSRHGIYTVCEGAKCPNIFHCW-----GEGTATFMILGEVCTRACRFCAVRTGNPRGYVDWGEVDRLVEAVRELGLKYVVVTSVARDDLPDGGASVFAAVVKKLREV--GCVVEVLVPDFGGSPASVKTVVSSGPDVFAHNVETVRRLTPLVRDRRAGYERSLSVLKYAKEF--GAPLTKSGLMLGLGETFEEVVETLEDLRRADVDIVTIGQYIKPSGSPRHL 237          
BLAST of FC910658 vs. ExPASy Swiss-Prot
Match: LIPA_OCEIH (Lipoyl synthase OS=Oceanobacillus iheyensis GN=lipA PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 2.301e-51
Identity = 109/248 (43.95%), Postives = 153/248 (61.69%), Query Frame = 2
Query:  257 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRASKRHIARV*IHHP 1000
            W+K  I     Y  +KK +R+ +L+TVCEEA+CPNL ECWS  +T    AT MILGDTCTRGCRFC VKT              VA+++   GL +VV+T+V RDDL D G+  FA+TVR ++   P   IE L  D +G+   +  +  SG ++F HNIETV  L   VR  RA + +SL++L   K+  P  T TK+SIM+G GE  D+++  M+ + A  VD++T GQY++ +K+H+  V  +HP
Sbjct:   13 WLKTRINTNKSYRNLKKLMRDNRLNTVCEEARCPNLHECWSERKT----ATFMILGDTCTRGCRFCAVKTG-LPNELDWGEPERVADSVTVMGLKHVVVTAVARDDLNDGGAAVFAETVRAIRRKNPGCTIEILPSDMKGDYESLHTLMDSGPDIFNHNIETVRRLTKRVR-ARAMYDRSLELLRRVKEIAP-NTPTKSSIMVGLGEEKDEIIQAMDDLLAHNVDIVTLGQYLQPTKKHLEVVRYYHP 253          
BLAST of FC910658 vs. ExPASy Swiss-Prot
Match: LIPA_PSEU5 (Lipoyl synthase OS=Pseudomonas stutzeri (strain A1501) GN=lipA PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 3.005e-51
Identity = 112/249 (44.98%), Postives = 157/249 (63.05%), Query Frame = 2
Query:  257 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREV-AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRASKRHIARV*IHHP 1000
            W++  IP   +  QIK+ LR+ KLH+VCEEA CPNLGEC+S G     TAT MI+GD CTR C FC+V   R           N+A+AIA   L YVVITSVDRDDL D G+ HFA  +R++++L P++ +E LVPD+RG      ++ A    +VF HN+ETV  L  + R   ++F+ SLD+L   K  VP G  TK+ +MLG GET ++V+  M+++R   +D++T GQY++ S+ H+      HP
Sbjct:   45 WIRVRIPVSPEVDQIKQTLRKHKLHSVCEEASCPNLGECFSSG-----TATFMIMGDICTRRCPFCDVGHGRPNALDPDEPK-NLAQAIADMRLKYVVITSVDRDDLRDGGAQHFADCLREIRKLSPSIQLETLVPDYRGRMEIALDITATEPPDVFNHNLETVPRLYKSSRP-GSDFEWSLDLLEKFKQRVP-GVPTKSGLMLGLGETDEEVIEVMQRMREHDIDMLTLGQYLQPSRNHLPVQRFVHP 285          
The following BLAST results are available for this feature:
BLAST of FC910658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LIPA_ANAPZ9.341e-5343.75Lipoyl synthase OS=Anaplasma phagocytophilum (stra... [more]
LIPA_RUBXD1.220e-5244.58Lipoyl synthase OS=Rubrobacter xylanophilus (strai... [more]
LIPA_BACHD7.908e-5244.35Lipoyl synthase OS=Bacillus halodurans GN=lipA PE=... [more]
LIPA_PSEAE1.349e-5145.78Lipoyl synthase OS=Pseudomonas aeruginosa GN=lipA ... [more]
LIPA_PSEAB1.349e-5145.78Lipoyl synthase OS=Pseudomonas aeruginosa (strain ... [more]
LIPA_PSEA81.349e-5145.78Lipoyl synthase OS=Pseudomonas aeruginosa (strain ... [more]
LIPA_BACSK1.349e-5143.55Lipoyl synthase OS=Bacillus clausii (strain KSM-K1... [more]
LIPA_PYRAE1.762e-5145.83Probable lipoyl synthase OS=Pyrobaculum aerophilum... [more]
LIPA_OCEIH2.301e-5143.95Lipoyl synthase OS=Oceanobacillus iheyensis GN=lip... [more]
LIPA_PSEU53.005e-5144.98Lipoyl synthase OS=Pseudomonas stutzeri (strain A1... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA68DC09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA68DC09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910658 ID=FC910658; Name=FC910658; organism=Citrus clementina; type=EST; length=1008bp
AGAAAAAAAATCGGCCATGCGATCGCGGTTCACATTAGCCCTAGCTCGCA
CTTTAACAAGCAGAACGAGACCGTTTTCATCGTCAGCACAAACCCCACCA
ACCGAACGGCCCACCAAATTCCCCCAAACTCTCGCGGGCCTCCGTGCCCG
CCTGGCCTCCGAGTCACCCGCCCTCTCCGATTTCATCGACCTCCAAAGCA
ACAGTTCGTACTCCGTCGAAGTTGGAACCAAAAAGAAGCCCCTTCCCAAG
CCCAAATGGATGAAGGAATCGATCCCCGGCGGCGATAAATACGTTCAGAT
TAAGAAAAAATTGCGCGAGTTGAAGCTTCACACTGTTTGTGAAGAGGCCA
AGTGCCCAAATTTGGGGGAGTGTTGGTCTGGCGGCGAGACGGGCACTGCA
ACGGCCACAATTATGATCTTGGGCGATACCTGTACTCGCGGTTGCAGGTT
TTGCAATGTGAAGACGTCGCGTGCACCTCCACCACCTGACCCAGACGAGC
CTACTAATGTTGCTGAGGCAATTGCGTCCTGGGGTTTGGATTATGTGGTG
ATTACTAGTGTTGATAGAGATGATTTAGCTGATCAGGGAAGTGGGCATTT
TGCTCAGACGGTGCGGAAGTTGAAAGAATTGAAGCCGAATATGCTTATTG
AAGCATTGGTTCCTGATTTTCGCGGAAACAACGGCTGTGTGCGGGAAGTT
GCCAAGTCAGGGTTGAATGTCTTTGCTCATAATATTGAGACGGTTGAAGA
GCTTCAAAGTGCTGTGAGGGATCACCGTGCTAATTTTAAGCAATCCTTGG
ACGTTCTAATGATGGCCAAAGACTATGTTCCTGCTGGAACACTCACCAAG
ACCTCAATAATGTTGGGTTGTGGGGAAACACCTGATCAAGTTGTGAGTAC
AATGGAGAAGGTGAGAGCAGCAGGTGTTGATGTAATGACATTTGGTCAAT
ATATGAGGGCATCAAAGCGACATATTGCCCGTGTCTGAATACATCACCCC
TGAGGCCT
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