FC910658

Overview
NameFC910658
Unique NameFC910658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1008
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC910658 vs. ExPASy Swiss-Prot
Match: LIPA_BEII9 (Lipoyl synthase OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=lipA PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 7.401e-50
Identity = 105/241 (43.57%), Postives = 148/241 (61.41%), Query Frame = 2
Query:  257 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRASKRHIA 979
            W++   PG  ++V+ +K ++E KL TVCEEA CPN+GECW+        AT MI+GDTCTR C FCNVKT             ++A+A+   GL +VVITSVDRDDLAD G+ HFAQ +R ++E  P   IE L PDF   +G +  V  +  +VF HN+ETV     +VR   A +  S+ +L   K+  P    TK+ IM+G GET ++V+  M+ +R A VD +T GQY++ +++H A
Sbjct:   39 WIRVKAPGSPEWVETQKIVKEHKLVTVCEEAGCPNIGECWAKKH-----ATFMIMGDTCTRACAFCNVKTG-LPNGLDPHEPAHIADAVQKLGLSHVVITSVDRDDLADGGAEHFAQVIRAIREASPKTTIEVLTPDFLRKDGALEIVVAARPDVFNHNLETVPAKYLSVRP-GARYFHSIRLLQRVKELDPT-IFTKSGIMVGLGETRNEVLQLMDDLRTADVDFLTIGQYLQPTRKHHA 271          
BLAST of FC910658 vs. ExPASy Swiss-Prot
Match: LIPA_ALCBS (Lipoyl synthase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=lipA PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 7.401e-50
Identity = 111/240 (46.25%), Postives = 153/240 (63.75%), Query Frame = 2
Query:  257 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG-NNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRASKRH 973
            W++  +P   +  +IK  LR+ KLHTVCEEA CPNL EC+ GG     TAT MI+GD CTR C FC+V   R           ++AE++ + GL+YVVITSVDRDDLAD G+ HFA+ +R+++ L P   IE L PDFR   +  V  +A++  +VF HNIETV EL   +R   A ++ SLD+L   K   P    TK+ IM+G GET +QV++T++ +R   VD++T GQY++ SK H
Sbjct:   41 WIRVRVPANGEIQRIKSLLRKQKLHTVCEEAACPNLPECFGGG-----TATFMIMGDICTRRCAFCDVGFGRPNALDAQEPL-HLAESVENLGLNYVVITSVDRDDLADGGAEHFAECIRQVRALTPETRIEILTPDFRPCLDTAVEILAETAPDVFNHNIETVPELYKHIRP-GARYQHSLDLLKRYKALRP-DVSTKSGIMVGLGETFEQVINTIKDLRTHDVDMITIGQYLQPSKHH 272          
BLAST of FC910658 vs. ExPASy Swiss-Prot
Match: LIPA_RICBR (Lipoyl synthase OS=Rickettsia bellii (strain RML369-C) GN=lipA PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 9.667e-50
Identity = 105/239 (43.93%), Postives = 141/239 (59.00%), Query Frame = 2
Query:  257 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRASKRH 973
            W+K   P   +Y   K  ++ LKL+TVCEEA CPN+GECWS        AT+MILG  CTR CRFCNVKT R            +AEA+   GL +VVITSVDRDDL D G+ HFA+ + ++++  PN  IE L PDF   +G    +A +  +VF HN+ETV  L + +R   A +  SL +L   K   P    TK+ +M+G GE   +VV  M+ +R A VD +T GQY++ +K H
Sbjct:   59 WIKVKAPNSSEYYNTKDLIKNLKLNTVCEEAACPNIGECWSKKH-----ATVMILGSVCTRACRFCNVKTGRPDLLDPHEPQ-RLAEAVQKLGLKHVVITSVDRDDLEDGGATHFAECISEIRKSSPNTTIEILTPDFLRKDGAAEIIANAKPDVFNHNVETVPSLYNTIRP-GARYYNSLSLLHNIKKLSPE-VFTKSGMMVGLGEEISEVVQVMDDLREAKVDFLTIGQYLQPTKNH 289          
BLAST of FC910658 vs. ExPASy Swiss-Prot
Match: LIPA_RICB8 (Lipoyl synthase OS=Rickettsia bellii (strain OSU 85-389) GN=lipA PE=3 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 9.667e-50
Identity = 105/239 (43.93%), Postives = 141/239 (59.00%), Query Frame = 2
Query:  257 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRASKRH 973
            W+K   P   +Y   K  ++ LKL+TVCEEA CPN+GECWS        AT+MILG  CTR CRFCNVKT R            +AEA+   GL +VVITSVDRDDL D G+ HFA+ + ++++  PN  IE L PDF   +G    +A +  +VF HN+ETV  L + +R   A +  SL +L   K   P    TK+ +M+G GE   +VV  M+ +R A VD +T GQY++ +K H
Sbjct:    7 WIKVKAPNSSEYYNTKDLIKNLKLNTVCEEAACPNIGECWSKKH-----ATVMILGSVCTRACRFCNVKTGRPDLLDPHEPQ-RLAEAVQKLGLKHVVITSVDRDDLEDGGATHFAECISEIRKSSPNTTIEILTPDFLRKDGAAEIIANAKPDVFNHNVETVPSLYNTIRP-GARYYNSLSLLHNIKKLSPE-VFTKSGMMVGLGEEISEVVQVMDDLREAKVDFLTIGQYLQPTKNH 237          
BLAST of FC910658 vs. ExPASy Swiss-Prot
Match: LIPA_PYRCJ (Probable lipoyl synthase OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=lipA PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 9.667e-50
Identity = 102/234 (43.59%), Postives = 140/234 (59.83%), Query Frame = 2
Query:  257 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMR 958
            W++       + V +++ +    +HT+CEEA CPN+  CW     G  TAT +ILGD CTR C+FC VKT              VAEA+A  GL YVVITSVDRDDL D G+  FA  V+ +K   P   +E L PDF G+   V  V ++G +V+AHN+ETV  L   VRD RA++  SL VL MAK+    G +TK+ +M+G GET D+V+  +  +R   VD++T GQY++
Sbjct:    6 WIRVKAGDYGRIVAVREAVFAAGVHTICEEAHCPNIFSCW-----GEGTATFLILGDVCTRACKFCAVKTGDPRGFVDPTEPARVAEAVAKLGLRYVVITSVDRDDLPDGGASQFASVVKAVKARAPWAKVEVLTPDFGGSAEAVASVVEAGPDVYAHNLETVRRLTPLVRDRRASYDVSLRVLKMAKE---LGAVTKSGLMVGLGETFDEVLEALSDLRRVDVDIVTIGQYLK 231          
BLAST of FC910658 vs. ExPASy Swiss-Prot
Match: LIPA_PSEFS (Lipoyl synthase OS=Pseudomonas fluorescens (strain SBW25) GN=lipA PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 9.667e-50
Identity = 110/249 (44.18%), Postives = 155/249 (62.25%), Query Frame = 2
Query:  257 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREV-AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRASKRHIARV*IHHP 1000
            W++  IP   +  +IK  LR+ KLH+VCEEA CPNLGEC+SGG     TAT MI+GD CTR C FC+V   R          + +A AIA   L YVVITSVDRDDL D G+ HFA  +R++++L PN+++E LVPD+RG      E+ A    +VF HN+ETV  L  A R   ++++ SL +L   K  +P    TK+ +MLG GET ++V+  M+++R   +D++T GQY++ S+ H+      HP
Sbjct:   58 WIRVRIPVSPEVDRIKALLRKHKLHSVCEEASCPNLGECFSGG-----TATFMIMGDICTRRCPFCDVGHGRPKPLDVNEPES-LAIAIADLKLKYVVITSVDRDDLRDGGAQHFADCIREIRKLSPNVMLETLVPDYRGRMDVALEITAAEPPDVFNHNLETVPRLYKAARP-GSDYQWSLTLLQKFKQMMP-HIPTKSGLMLGLGETDEEVIEVMKRMREHDIDMLTLGQYLQPSRSHLPVQRFVHP 298          
BLAST of FC910658 vs. ExPASy Swiss-Prot
Match: LIPA_EHRCR (Lipoyl synthase OS=Ehrlichia chaffeensis (strain Arkansas) GN=lipA PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 9.667e-50
Identity = 102/241 (42.32%), Postives = 148/241 (61.41%), Query Frame = 2
Query:  257 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRASKRHIA 979
            W+K  +P GD + Q++  ++  KL+TVCEEA CPN+GECW+        AT+MILG TCTR C FCNV  S            N+A+A+    L++VVITSVDRDDL D GSGHF + + ++++   N+ IE L PDF   +G + +VA +  +V+ HNIETV  L + +R  +A +  SL +L   K Y      TK+ IM+G GET +++   M  +R+A VD +T GQY++ + +H A
Sbjct:    7 WLKVKMPTGDTFYQVRNLMKLYKLNTVCEEAACPNIGECWNKRH-----ATVMILGSTCTRACAFCNV-VSGIPDKLDPHEPQNLAKAVGLLKLEHVVITSVDRDDLEDGGSGHFVECIEEIRKNDQNVTIEVLTPDFLNKHGAIEKVADAAPDVYNHNIETVPRLYAKIRP-KARYFHSLYLLKTVK-YKNPKVFTKSGIMVGLGETKEEIYQVMNDLRSADVDFITIGQYLQPTPKHAA 239          
BLAST of FC910658 vs. ExPASy Swiss-Prot
Match: LIPA_ANATD (Lipoyl synthase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=lipA PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 9.667e-50
Identity = 109/248 (43.95%), Postives = 148/248 (59.68%), Query Frame = 2
Query:  257 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRASKRHIARV*IHHP 1000
            W+K  +    K   + + L+   LHTVCEEA+CPN+ EC+S       TAT +I+GD CTR C FC+VK  +            VA A+ + GL YVVITSV RDDL D G+ HFA+ +R +K  +P   IE L+PDF+G+   V +V ++  +V AHNIET+E L   VR   A++K+SLDVL M K+ +     TK+ IM+G GET D+V   +E +R A  D +T GQY+  SK H   V   HP
Sbjct:    9 WLKIRVKADQKIDDVIEILKMFSLHTVCEEAQCPNIYECFS-----KKTATFLIMGDVCTRNCTFCDVKKGKPVKLNSDEPKM-VANAVGALGLKYVVITSVTRDDLPDGGASHFAECIRSIKGKRPYTKIEVLIPDFKGSFESVSKVVEASPDVVAHNIETIERLYPCVRP-LASYKRSLDVLRMVKE-IDKNIFTKSGIMVGLGETKDEVKKALEDLRNAECDFVTIGQYLSPSKNHHPVVEFVHP 248          
BLAST of FC910658 vs. ExPASy Swiss-Prot
Match: LIPA_SYMTH (Lipoyl synthase OS=Symbiobacterium thermophilum GN=lipA PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.649e-49
Identity = 107/241 (44.40%), Postives = 150/241 (62.24%), Query Frame = 2
Query:  257 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRASKRHIA 979
            W+K ++    ++V++K+ +R   LHTVCEEA+CPN+ ECW+       TAT MILGD CTR C FC V+ S             VA+A    GL +VV+TSV RDDL+D G+  FA+T+R ++   P   +E L+PDF GN   +  V  +  +V  HNIETV  L   VR  RA + +SL++L  AK+  P    TK+SIM+G GET  ++   M+ +RAAGVD++TFGQY+R + RH+A
Sbjct:   29 WLKINLRTDAEFVELKRLMRGQGLHTVCEEARCPNIFECWN-----RRTATFMILGDICTRNCGFCAVR-SGVPTGLDLAEPERVADACVQLGLRHVVVTSVARDDLSDGGASIFAETIRAIRRKNPFTGVEVLIPDFGGNWDALAVVMDAEPDVLNHNIETVRRLSDRVRS-RAKYDRSLELLRRAKEMKP-HVSTKSSIMVGLGETMQELYEAMDDLRAAGVDIVTFGQYLRPTARHLA 261          
BLAST of FC910658 vs. ExPASy Swiss-Prot
Match: LIPA_RICTY (Lipoyl synthase OS=Rickettsia typhi GN=lipA PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.649e-49
Identity = 105/239 (43.93%), Postives = 140/239 (58.58%), Query Frame = 2
Query:  257 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRASKRH 973
            W+K   P   +Y   K  ++ L+L+TVCEEA CPN+GECWS        AT+MILG  CTR CRFCNVKT R            +AEA+    L++VVITSVDRDDL D G+ HFA+ + +++   PN  IE L PDF    G V  +A S  +VF HN+ETV  L   +R   A +  SL +L   K   P    TK+ +M+G GE  ++VV  M+ +R A VD +T GQY++ +K H
Sbjct:   10 WIKVKAPNSAEYYNTKDLIKNLRLNTVCEEAACPNIGECWSRKH-----ATVMILGSVCTRACRFCNVKTGRPDLLDPHEPR-RLAEAVQKLNLNHVVITSVDRDDLEDGGASHFAECINEIRRSSPNTTIEILTPDFLRKAGAVEVIANSKPDVFNHNVETVPSLYKTIRP-GARYYNSLSLLHNIKKLSPE-IFTKSGMMVGLGEEINEVVQVMDDLREANVDFLTIGQYLQPTKSH 240          
The following BLAST results are available for this feature:
BLAST of FC910658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LIPA_BEII97.401e-5043.57Lipoyl synthase OS=Beijerinckia indica subsp. indi... [more]
LIPA_ALCBS7.401e-5046.25Lipoyl synthase OS=Alcanivorax borkumensis (strain... [more]
LIPA_RICBR9.667e-5043.93Lipoyl synthase OS=Rickettsia bellii (strain RML36... [more]
LIPA_RICB89.667e-5043.93Lipoyl synthase OS=Rickettsia bellii (strain OSU 8... [more]
LIPA_PYRCJ9.667e-5043.59Probable lipoyl synthase OS=Pyrobaculum calidifont... [more]
LIPA_PSEFS9.667e-5044.18Lipoyl synthase OS=Pseudomonas fluorescens (strain... [more]
LIPA_EHRCR9.667e-5042.32Lipoyl synthase OS=Ehrlichia chaffeensis (strain A... [more]
LIPA_ANATD9.667e-5043.95Lipoyl synthase OS=Anaerocellum thermophilum (stra... [more]
LIPA_SYMTH1.649e-4944.40Lipoyl synthase OS=Symbiobacterium thermophilum GN... [more]
LIPA_RICTY1.649e-4943.93Lipoyl synthase OS=Rickettsia typhi GN=lipA PE=3 S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA68DC09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA68DC09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910658 ID=FC910658; Name=FC910658; organism=Citrus clementina; type=EST; length=1008bp
AGAAAAAAAATCGGCCATGCGATCGCGGTTCACATTAGCCCTAGCTCGCA
CTTTAACAAGCAGAACGAGACCGTTTTCATCGTCAGCACAAACCCCACCA
ACCGAACGGCCCACCAAATTCCCCCAAACTCTCGCGGGCCTCCGTGCCCG
CCTGGCCTCCGAGTCACCCGCCCTCTCCGATTTCATCGACCTCCAAAGCA
ACAGTTCGTACTCCGTCGAAGTTGGAACCAAAAAGAAGCCCCTTCCCAAG
CCCAAATGGATGAAGGAATCGATCCCCGGCGGCGATAAATACGTTCAGAT
TAAGAAAAAATTGCGCGAGTTGAAGCTTCACACTGTTTGTGAAGAGGCCA
AGTGCCCAAATTTGGGGGAGTGTTGGTCTGGCGGCGAGACGGGCACTGCA
ACGGCCACAATTATGATCTTGGGCGATACCTGTACTCGCGGTTGCAGGTT
TTGCAATGTGAAGACGTCGCGTGCACCTCCACCACCTGACCCAGACGAGC
CTACTAATGTTGCTGAGGCAATTGCGTCCTGGGGTTTGGATTATGTGGTG
ATTACTAGTGTTGATAGAGATGATTTAGCTGATCAGGGAAGTGGGCATTT
TGCTCAGACGGTGCGGAAGTTGAAAGAATTGAAGCCGAATATGCTTATTG
AAGCATTGGTTCCTGATTTTCGCGGAAACAACGGCTGTGTGCGGGAAGTT
GCCAAGTCAGGGTTGAATGTCTTTGCTCATAATATTGAGACGGTTGAAGA
GCTTCAAAGTGCTGTGAGGGATCACCGTGCTAATTTTAAGCAATCCTTGG
ACGTTCTAATGATGGCCAAAGACTATGTTCCTGCTGGAACACTCACCAAG
ACCTCAATAATGTTGGGTTGTGGGGAAACACCTGATCAAGTTGTGAGTAC
AATGGAGAAGGTGAGAGCAGCAGGTGTTGATGTAATGACATTTGGTCAAT
ATATGAGGGCATCAAAGCGACATATTGCCCGTGTCTGAATACATCACCCC
TGAGGCCT
back to top