FC910661

Overview
NameFC910661
Unique NameFC910661
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length800
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC910661 vs. ExPASy Swiss-Prot
Match: ATPB_GRABC (ATP synthase subunit beta OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=atpD PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.087e-55
Identity = 112/169 (66.27%), Postives = 131/169 (77.51%), Query Frame = 1
Query:  292 SIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 798
            ++G+V Q++GAVVDV+FD  LP I  AL+       L+LEVAQ +GE  VR IAMD T+GLVRG  V + G PITVPVG  TLGRI+NVIGEPIDE+G +  +    IHREAP+F EQA   +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINN+AKAH
Sbjct:    5 NVGRVTQILGAVVDVQFDGELPFIQNALQTRIGDRTLILEVAQELGERTVRAIAMDSTDGLVRGAEVEDLGRPITVPVGPGTLGRILNVIGEPIDERGPVDAKKTYSIHREAPSFEEQAASAEILVTGIKVVDLLAPYLKGGKIGLFGGAGVGKTVLIQELINNIAKAH 173          
BLAST of FC910661 vs. ExPASy Swiss-Prot
Match: ATPB_GLUDA (ATP synthase subunit beta OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=atpD PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 5.338e-55
Identity = 111/168 (66.07%), Postives = 133/168 (79.17%), Query Frame = 1
Query:  295 IGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 798
            +G+V QV GAVVDV+F+  LP IL AL V  +   +VLEVAQ +GE  VR IAMD T+GL+RG  V+ TG  ITVPVG  TLGRI+NVIGEPIDE+G +K++   PIHR+AP+F EQA   +ILVTGIKVVDLL PY +GGK+GLFGGAGVGKTV+I ELINN+AKAH
Sbjct:   23 VGRVTQVRGAVVDVQFEGTLPHILDALHVTFNGQTVVLEVAQEIGEHEVRCIAMDTTDGLMRGTEVVATGGQITVPVGPGTLGRILNVIGEPIDERGPVKSDKRYPIHRKAPSFDEQAAATEILVTGIKVVDLLCPYLKGGKVGLFGGAGVGKTVIIQELINNIAKAH 190          
BLAST of FC910661 vs. ExPASy Swiss-Prot
Match: ATPB_CARHZ (ATP synthase subunit beta OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=atpD PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.972e-55
Identity = 105/178 (58.99%), Postives = 136/178 (76.40%), Query Frame = 1
Query:  292 SIGQVCQVIGAVVDVRFDEG-LPPILTALEV--------VDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 798
            ++G+V QVIG VVDV F+ G +PPI  AL++         +  + L LEVAQH+G   VR +AM  T+GLVRG +V++TG+PITVPVGR  LGR++NV+GEPID KG ++++HY PIHR AP   EQ+T  +IL TGIKV+DLL P+ +GGKIGLFGGAGVGKTV++MELINN+AK H
Sbjct:    2 NVGRVVQVIGVVVDVEFEPGKVPPIYNALKIRSEDQDTPTEVPINLTLEVAQHLGNNRVRAVAMSSTDGLVRGMKVVDTGAPITVPVGRPVLGRLLNVLGEPIDGKGPVESDHYYPIHRPAPPLEEQSTRAEILETGIKVIDLLVPFLKGGKIGLFGGAGVGKTVIVMELINNIAKQH 179          
BLAST of FC910661 vs. ExPASy Swiss-Prot
Match: ATPB_SORC5 (ATP synthase subunit beta OS=Sorangium cellulosum (strain So ce56) GN=atpD PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.189e-54
Identity = 110/174 (63.22%), Postives = 134/174 (77.01%), Query Frame = 1
Query:  295 IGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSV-----RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 798
            +G++ QVIG VVDV F  G LP IL AL++ + S+      LVLEVAQH+GE  VRTIAMD T+GLVRG  V +TG PI VPVG   LGRI+NV+G PIDE G +  +   PIHRE P F+EQ+T+ ++  TGIKV+DL+APY++GGKIGLFGGAGVGKTVLI+ELINNVAKAH
Sbjct:    3 VGKITQVIGPVVDVDFPAGQLPKILNALKLSNPSISAEPDNLVLEVAQHLGESSVRTIAMDSTDGLVRGMEVRDTGKPIMVPVGNECLGRILNVVGVPIDEAGPVHAKKVAPIHREPPPFIEQSTKVEVFETGIKVIDLIAPYRKGGKIGLFGGAGVGKTVLILELINNVAKAH 176          
BLAST of FC910661 vs. ExPASy Swiss-Prot
Match: ATPB_LAWIP (ATP synthase subunit beta OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=atpD PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.553e-54
Identity = 106/174 (60.92%), Postives = 138/174 (79.31%), Query Frame = 1
Query:  292 SIGQVCQVIGAVVDVRFDEG-LPPILTALEVVD----HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 798
            +IG++ QVIGAVVDV F  G LPPILTALE+ +     + +L+ EVAQH+G+ +VRTIAMD TEGL RG  VL+TG PI  PVG+ +LGRIMNV+G+PID  G + T+ YLPIHR+ P+F++Q T  + L TGIKV+DLL P+ +GGK+GLFGGAGVGKTV++ME+INN+A+ H
Sbjct:    4 NIGKIVQVIGAVVDVSFPNGKLPPILTALEIHNPNSIDAPKLICEVAQHLGDDIVRTIAMDATEGLKRGMDVLDTGHPIMAPVGKASLGRIMNVVGQPIDGLGVIDTKTYLPIHRKPPSFLDQNTSVEPLETGIKVIDLLVPFPKGGKMGLFGGAGVGKTVILMEMINNIARQH 177          
BLAST of FC910661 vs. ExPASy Swiss-Prot
Match: ATPB3_PELCD (ATP synthase subunit beta 3 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=atpD3 PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.028e-54
Identity = 113/175 (64.57%), Postives = 135/175 (77.14%), Query Frame = 1
Query:  292 SIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSV-----RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 798
            S G++ QVIG V+DV F+ G LP I  AL+V + S+      LV EVAQH+GE  VR IAMD T+GLVRGQ VLNTG  I+VPVGR TLGRI+NVIGEP+DE+G ++T+    IHR  P FV+Q+T+ +   TGIKVVDLLAPY RGGKIGLFGGAGVGKTVLIMELI+N+AK H
Sbjct:    2 SNGKITQVIGPVIDVEFEAGELPEIYYALKVSNPSLGDEPWNLVAEVAQHLGENTVRAIAMDSTDGLVRGQEVLNTGRQISVPVGRGTLGRILNVIGEPVDEQGPVETDTTWEIHRPTPEFVDQSTKVEAFETGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELIHNIAKKH 176          
BLAST of FC910661 vs. ExPASy Swiss-Prot
Match: ATPB2_PELPD (ATP synthase subunit beta 2 OS=Pelobacter propionicus (strain DSM 2379) GN=atpD2 PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.028e-54
Identity = 112/173 (64.74%), Postives = 132/173 (76.30%), Query Frame = 1
Query:  298 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVR-----LVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 798
            G++ QVIGAVVDV F+ G LP I  AL V + ++      LVLEVAQH+GE  VRTIAMD T+GL RGQ VL+TG  I  PVG+ TLGRI+NVIGEP+DE G +  +   PIHREAP F +Q+T+ +   TGIKVVDLLAPY RGGKIGLFGGAGVGKTVLIMELINN+A+ H
Sbjct:    6 GKITQVIGAVVDVEFEPGKLPEIYHALRVTNPAINDSENNLVLEVAQHLGENSVRTIAMDSTDGLKRGQAVLDTGKQICAPVGKKTLGRIINVIGEPVDEMGPIGNDKENPIHREAPPFEDQSTKVEAFTTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELINNIARQH 178          
BLAST of FC910661 vs. ExPASy Swiss-Prot
Match: ATPB1_PELPD (ATP synthase subunit beta 1 OS=Pelobacter propionicus (strain DSM 2379) GN=atpD1 PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.028e-54
Identity = 112/173 (64.74%), Postives = 132/173 (76.30%), Query Frame = 1
Query:  298 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVR-----LVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 798
            G++ QVIGAVVDV F+ G LP I  AL V + ++      LVLEVAQH+GE  VRTIAMD T+GL RGQ VL+TG  I  PVG+ TLGRI+NVIGEP+DE G +  +   PIHREAP F +Q+T+ +   TGIKVVDLLAPY RGGKIGLFGGAGVGKTVLIMELINN+A+ H
Sbjct:    6 GKITQVIGAVVDVEFEPGKLPEIYHALRVTNPAINDSENNLVLEVAQHLGENSVRTIAMDSTDGLKRGQAVLDTGKQICAPVGKKTLGRIINVIGEPVDEMGPIGNDKENPIHREAPPFEDQSTKVEAFTTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELINNIARQH 178          
BLAST of FC910661 vs. ExPASy Swiss-Prot
Match: ATPB1_PELCD (ATP synthase subunit beta 1 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=atpD1 PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.028e-54
Identity = 113/175 (64.57%), Postives = 135/175 (77.14%), Query Frame = 1
Query:  292 SIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSV-----RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 798
            S G++ QVIG V+DV F+ G LP I  AL+V + S+      LV EVAQH+GE  VR IAMD T+GLVRGQ VLNTG  I+VPVGR TLGRI+NVIGEP+DE+G ++T+    IHR  P FV+Q+T+ +   TGIKVVDLLAPY RGGKIGLFGGAGVGKTVLIMELI+N+AK H
Sbjct:    2 SNGKITQVIGPVIDVEFEAGELPEIYYALKVSNPSLGDEPWNLVAEVAQHLGENTVRAIAMDSTDGLVRGQEVLNTGRQISVPVGRGTLGRILNVIGEPVDEQGPVETDTTWEIHRPTPEFVDQSTKVEAFETGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELIHNIAKKH 176          
BLAST of FC910661 vs. ExPASy Swiss-Prot
Match: ATPB1_GLUOX (ATP synthase subunit beta 1 OS=Gluconobacter oxydans GN=atpD1 PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.649e-54
Identity = 111/168 (66.07%), Postives = 129/168 (76.79%), Query Frame = 1
Query:  295 IGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 798
            +G+V QV G VVDV+F+  LP IL AL V +    LVLEVAQ +GE  VR IAMD T+GLVRG  V +TG  I VPVG  TLGRI+NV+GEPIDE+G + +E   PIHR AP+F EQA   +ILVTGIKVVDLL PY +GGKIGLFGGAGVGKTV+I ELINN+AKAH
Sbjct:   16 VGRVTQVRGPVVDVQFEGDLPFILNALHVQNGDHTLVLEVAQEIGERQVRCIAMDTTDGLVRGTEVRDTGKQIMVPVGPATLGRILNVVGEPIDERGPISSELRFPIHRPAPSFEEQAAASEILVTGIKVVDLLCPYLKGGKIGLFGGAGVGKTVIIQELINNIAKAH 183          
The following BLAST results are available for this feature:
BLAST of FC910661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_GRABC4.087e-5566.27ATP synthase subunit beta OS=Granulibacter bethesd... [more]
ATPB_GLUDA5.338e-5566.07ATP synthase subunit beta OS=Gluconacetobacter dia... [more]
ATPB_CARHZ6.972e-5558.99ATP synthase subunit beta OS=Carboxydothermus hydr... [more]
ATPB_SORC51.189e-5463.22ATP synthase subunit beta OS=Sorangium cellulosum ... [more]
ATPB_LAWIP1.553e-5460.92ATP synthase subunit beta OS=Lawsonia intracellula... [more]
ATPB3_PELCD2.028e-5464.57ATP synthase subunit beta 3 OS=Pelobacter carbinol... [more]
ATPB2_PELPD2.028e-5464.74ATP synthase subunit beta 2 OS=Pelobacter propioni... [more]
ATPB1_PELPD2.028e-5464.74ATP synthase subunit beta 1 OS=Pelobacter propioni... [more]
ATPB1_PELCD2.028e-5464.57ATP synthase subunit beta 1 OS=Pelobacter carbinol... [more]
ATPB1_GLUOX2.649e-5466.07ATP synthase subunit beta 1 OS=Gluconobacter oxyda... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA22CC10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22CC10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910661 ID=FC910661; Name=FC910661; organism=Citrus clementina; type=EST; length=800bp
ACTATTCTCATTCTCTCAACATTGAAGCCCTGACCAATGGCTTCACGTAG
ACTCCTATCATCTCTCCTTCGCTCATCTGTCCGCCGATCTCCCTCCAAAT
CTTCGTTTTCTAACTCATCTGTGTTCTCTCCTACCTCCACGCGCCGCGCG
TCTCCTTATGGGCACCTTCTCTCGCGCGTCTCAGAGTACGCGACCTCAGC
AGCCGCCACTGCCCCACCGGCACAGACTCCGAAGTCGGATGTAAAGAAAG
GCGGCGGTGGTAAAATCACCGATGAGTTTACTGGAAAGGGCTCGATCGGT
CAGGTTTGTCAGGTCATCGGTGCCGTCGTTGATGTCAGATTTGACGAGGG
GTTGCCTCCGATTTTGACCGCGCTTGAAGTGGTAGATCACTCGGTTCGGC
TAGTGCTTGAGGTGGCTCAGCACATGGGTGAGGGTGTTGTTAGGACTATT
GCTATGGATGGAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATAC
TGGCTCTCCAATCACTGTACCTGTGGGGAGAGTTACCCTGGGTCGTATTA
TGAATGTCATTGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAA
CATTACTTGCCCATCCACAGAGAGGCTCCAGCATTCGTTGAGCAGGCAAC
TGAACAACAGATTCTAGTCACTGGCATCAAGGTCGTTGATCTCCTTGCTC
CATACCAAAGAGGAGGGAAGATCGGGCTTTTTGGTGGTGCTGGTGTAGGA
AAAACTGTGCTTATTATGGAACTTATTAACAATGTTGCGAAGGCTCATGG
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