FC910661

Overview
NameFC910661
Unique NameFC910661
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length800
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3127 contig Ccv1_Contig3127:1..800. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of FC910661 vs. ExPASy Swiss-Prot
Match: ATPB_GOSBA (ATP synthase subunit beta, chloroplastic OS=Gossypium barbadense GN=atpB PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.402e-47
Identity = 98/177 (55.37%), Postives = 124/177 (70.06%), Query Frame = 1
Query:  286 KGSIGQVCQVIGAVVDVRFDEG-LPPILTALEV-----VDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 798
            K ++G++ Q+IG V+DV F  G +P I  AL V         + +  EV Q +G   VR +AM  T+GL RG  V++TG+ ++VPVG  TLGRI NV+GEP+D  G + T    PIH+ APAF++  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   17 KENLGRISQIIGPVLDVAFPPGKMPNIYNALVVKGQDTAGQQINVTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGTALSVPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPIHKSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 193          
BLAST of FC910661 vs. ExPASy Swiss-Prot
Match: ATPB_CYAPA (ATP synthase subunit beta, cyanelle OS=Cyanophora paradoxa GN=atpB PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.402e-47
Identity = 100/179 (55.87%), Postives = 125/179 (69.83%), Query Frame = 1
Query:  280 TGKGSIGQVCQVIGAVVDVRFDEG-LPPILTALEV-----VDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 798
            T K + G V QVIG V+DV F  G LP I  A+ V         + +  EV Q +G+  VR ++M  T+G++RG  V ++G+ I+VPVG  TLGRI NV+GEP+DE G +  +  LPIHR +PAF +  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:    5 TSKTNTGYVTQVIGPVLDVSFPNGQLPKIYNAITVKGKNEAGQDITVTCEVQQLLGDNQVRAVSMSTTDGILRGMEVTDSGAAISVPVGTPTLGRIFNVLGEPVDELGAVVCDSTLPIHRPSPAFTQLETKSSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 183          
BLAST of FC910661 vs. ExPASy Swiss-Prot
Match: ATPB_COXBU (ATP synthase subunit beta OS=Coxiella burnetii GN=atpD PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.402e-47
Identity = 99/168 (58.93%), Postives = 124/168 (73.81%), Query Frame = 1
Query:  298 GQVCQVIGAVVDVRFDE-GLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 798
            G   ++IGAVVDV F    +P +  AL+V +++  L LEV Q +G+GVVRTIAM  TEGL R   V NT  PI VPVG+ TLGRIMNV+GEPIDE G + ++  LPIHR AP+F+EQ+   ++L TGIKVVDLL P+ +GGK+GLFGGAGVGKTV +MELI N+A  H
Sbjct:    7 GTTIEIIGAVVDVEFPRHAVPKVYDALQVDENN--LTLEVQQQLGDGVVRTIAMGSTEGLKRDIAVKNTEKPIEVPVGKETLGRIMNVLGEPIDELGPINSKEKLPIHRPAPSFIEQSGATELLETGIKVVDLLCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEH 172          
BLAST of FC910661 vs. ExPASy Swiss-Prot
Match: ATPB_COXBR (ATP synthase subunit beta OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=atpD PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.402e-47
Identity = 99/168 (58.93%), Postives = 124/168 (73.81%), Query Frame = 1
Query:  298 GQVCQVIGAVVDVRFDE-GLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 798
            G   ++IGAVVDV F    +P +  AL+V +++  L LEV Q +G+GVVRTIAM  TEGL R   V NT  PI VPVG+ TLGRIMNV+GEPIDE G + ++  LPIHR AP+F+EQ+   ++L TGIKVVDLL P+ +GGK+GLFGGAGVGKTV +MELI N+A  H
Sbjct:    7 GTTIEIIGAVVDVEFPRHAVPKVYDALQVDENN--LTLEVQQQLGDGVVRTIAMGSTEGLKRDIAVKNTEKPIEVPVGKETLGRIMNVLGEPIDELGPINSKEKLPIHRPAPSFIEQSGTTELLETGIKVVDLLCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEH 172          
BLAST of FC910661 vs. ExPASy Swiss-Prot
Match: ATPB_COXBN (ATP synthase subunit beta OS=Coxiella burnetii (strain Dugway 5J108-111) GN=atpD PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.402e-47
Identity = 99/168 (58.93%), Postives = 124/168 (73.81%), Query Frame = 1
Query:  298 GQVCQVIGAVVDVRFDE-GLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 798
            G   ++IGAVVDV F    +P +  AL+V +++  L LEV Q +G+GVVRTIAM  TEGL R   V NT  PI VPVG+ TLGRIMNV+GEPIDE G + ++  LPIHR AP+F+EQ+   ++L TGIKVVDLL P+ +GGK+GLFGGAGVGKTV +MELI N+A  H
Sbjct:    7 GTTIEIIGAVVDVEFPRHAVPKVYDALQVDENN--LTLEVQQQLGDGVVRTIAMGSTEGLKRDIAVKNTEKPIEVPVGKETLGRIMNVLGEPIDELGPINSKEKLPIHRPAPSFIEQSGATELLETGIKVVDLLCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEH 172          
BLAST of FC910661 vs. ExPASy Swiss-Prot
Match: ATPB_CHAVU (ATP synthase subunit beta, chloroplastic OS=Chara vulgaris GN=atpB PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.402e-47
Identity = 98/173 (56.65%), Postives = 123/173 (71.10%), Query Frame = 1
Query:  298 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHS-----VRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 798
            G++ Q+IG V+D+ F  G +P I   L V   +     + +  EV Q +G+  VR +AM  T+GL+RG  V++TGSP++VPVG  TLGRI NV+GEP+D  G + T    PIHR APAF +  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   19 GKITQIIGPVMDISFLPGQMPNIYNCLTVKGKNASGDFIDVTCEVQQLLGDNKVRAVAMSATDGLMRGMEVIDTGSPLSVPVGETTLGRIFNVLGEPVDNLGPVDTSITFPIHRAAPAFTQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 191          
BLAST of FC910661 vs. ExPASy Swiss-Prot
Match: ATPB_BUCAP (ATP synthase subunit beta OS=Buchnera aphidicola subsp. Schizaphis graminum GN=atpD PE=3 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 2.402e-47
Identity = 98/173 (56.65%), Postives = 126/173 (72.83%), Query Frame = 1
Query:  298 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTE-----HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 798
            G++ Q+IGAVVDV FD+  +P I  ALEV +  ++L+LEV Q +G G+VRTIAM  T GL RG  V++ G  I VPVG+ TLGRI+NV+G+ ID KG LK        Y  IHR AP++ EQA+ Q+IL TGIKV+DL+ P+ +GGK+GLFGGAGVGKTV +MELI N+A  H
Sbjct:    5 GKIIQIIGAVVDVEFDQNSVPKIYNALEVKNKKIQLILEVQQQLGAGIVRTIAMGSTNGLKRGLIVIDLGHYIKVPVGQATLGRIINVLGKTIDNKGPLKNLDNSKLEYWEIHRSAPSYQEQASSQEILETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELIRNIAIEH 177          
BLAST of FC910661 vs. ExPASy Swiss-Prot
Match: ATPB_AMOA5 (ATP synthase subunit beta OS=Amoebophilus asiaticus (strain 5a2) GN=atpD PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.402e-47
Identity = 99/172 (57.56%), Postives = 126/172 (73.26%), Query Frame = 1
Query:  292 SIGQVCQVIGAVVDVRFDEG--LPPILTALEVVD-HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 798
            +IG + Q+IG ++DV F+    LP IL ALEV      ++VLE  QH+G+  VRTIAM  TEGLVRG +V++TG+ I +PVG    GR+ NVIGE ID     KT+  LPIHR AP F + +T  ++L TGIKV+DLLAPY +GGKIGLFGGAGVGKTVLIMELI+N+AK++
Sbjct:    3 NIGAITQIIGPIIDVSFENSGKLPAILNALEVTKADGQKIVLECQQHLGQYAVRTIAMHETEGLVRGMKVVDTGAAIQMPVGEAIRGRLFNVIGEAIDGLPQPKTQQKLPIHRPAPKFKDISTATEVLYTGIKVIDLLAPYVKGGKIGLFGGAGVGKTVLIMELIDNIAKSY 174          
BLAST of FC910661 vs. ExPASy Swiss-Prot
Match: ATPB_ACEWO (ATP synthase subunit beta, sodium ion specific OS=Acetobacterium woodii GN=atpD PE=1 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 2.402e-47
Identity = 100/171 (58.48%), Postives = 125/171 (73.10%), Query Frame = 1
Query:  292 SIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKG-DLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 798
            +IG+V QVIG VVDV+F +  LP +  A+ +  +   LV+EVAQ +G+ +VR IAMD T+GL+R Q  ++TGS I VPVG+ TLGR+ NV+GEPID K  D K     PIHR  P+F EQ T+ ++  TGIKVVDL+ PY RGGKIGLFGGAGVGKTVLI ELINN+A  H
Sbjct:    4 NIGKVVQVIGPVVDVKFQKDKLPKLNNAVNIELNGHTLVIEVAQQLGDDIVRCIAMDSTDGLMRNQEAVDTGSAIQVPVGKATLGRMFNVLGEPIDGKPFDTKDVVMHPIHRHPPSFEEQQTQPEMFETGIKVVDLICPYVRGGKIGLFGGAGVGKTVLIQELINNIATQH 174          
BLAST of FC910661 vs. ExPASy Swiss-Prot
Match: ATPB1_RHOFD (ATP synthase subunit beta 1 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=atpD1 PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.402e-47
Identity = 98/177 (55.37%), Postives = 128/177 (72.32%), Query Frame = 1
Query:  271 DEFTGKGSIGQVCQVIGAVVDVRFD-EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 798
            D  T     G++ Q IGAVVDV F  + +P I  AL++   +  L LEV Q +G+G+VRTIA+  ++GL RG  V NT +PI VPVG  TLGRIM+V+G PIDE+G + TE Y  IHR+AP + E +  Q++L TGIKV+DL+ P+ +GGK+GLFGGAGVGKTV +MELINN+AKAH
Sbjct:    4 DTQTNTAVQGKIVQCIGAVVDVEFPRDQMPKIYDALKLEGSA--LTLEVQQQLGDGIVRTIALGSSDGLRRGLMVSNTANPIMVPVGTATLGRIMDVLGTPIDERGPVSTEKYASIHRKAPTYDELSPSQELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAH 178          
The following BLAST results are available for this feature:
BLAST of FC910661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_GOSBA2.402e-4755.37ATP synthase subunit beta, chloroplastic OS=Gossyp... [more]
ATPB_CYAPA2.402e-4755.87ATP synthase subunit beta, cyanelle OS=Cyanophora ... [more]
ATPB_COXBU2.402e-4758.93ATP synthase subunit beta OS=Coxiella burnetii GN=... [more]
ATPB_COXBR2.402e-4758.93ATP synthase subunit beta OS=Coxiella burnetii (st... [more]
ATPB_COXBN2.402e-4758.93ATP synthase subunit beta OS=Coxiella burnetii (st... [more]
ATPB_CHAVU2.402e-4756.65ATP synthase subunit beta, chloroplastic OS=Chara ... [more]
ATPB_BUCAP2.402e-4756.65ATP synthase subunit beta OS=Buchnera aphidicola s... [more]
ATPB_AMOA52.402e-4757.56ATP synthase subunit beta OS=Amoebophilus asiaticu... [more]
ATPB_ACEWO2.402e-4758.48ATP synthase subunit beta, sodium ion specific OS=... [more]
ATPB1_RHOFD2.402e-4755.37ATP synthase subunit beta 1 OS=Rhodoferax ferrired... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA22CC10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22CC10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910661 ID=FC910661; Name=FC910661; organism=Citrus clementina; type=EST; length=800bp
ACTATTCTCATTCTCTCAACATTGAAGCCCTGACCAATGGCTTCACGTAG
ACTCCTATCATCTCTCCTTCGCTCATCTGTCCGCCGATCTCCCTCCAAAT
CTTCGTTTTCTAACTCATCTGTGTTCTCTCCTACCTCCACGCGCCGCGCG
TCTCCTTATGGGCACCTTCTCTCGCGCGTCTCAGAGTACGCGACCTCAGC
AGCCGCCACTGCCCCACCGGCACAGACTCCGAAGTCGGATGTAAAGAAAG
GCGGCGGTGGTAAAATCACCGATGAGTTTACTGGAAAGGGCTCGATCGGT
CAGGTTTGTCAGGTCATCGGTGCCGTCGTTGATGTCAGATTTGACGAGGG
GTTGCCTCCGATTTTGACCGCGCTTGAAGTGGTAGATCACTCGGTTCGGC
TAGTGCTTGAGGTGGCTCAGCACATGGGTGAGGGTGTTGTTAGGACTATT
GCTATGGATGGAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATAC
TGGCTCTCCAATCACTGTACCTGTGGGGAGAGTTACCCTGGGTCGTATTA
TGAATGTCATTGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAA
CATTACTTGCCCATCCACAGAGAGGCTCCAGCATTCGTTGAGCAGGCAAC
TGAACAACAGATTCTAGTCACTGGCATCAAGGTCGTTGATCTCCTTGCTC
CATACCAAAGAGGAGGGAAGATCGGGCTTTTTGGTGGTGCTGGTGTAGGA
AAAACTGTGCTTATTATGGAACTTATTAACAATGTTGCGAAGGCTCATGG
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