FC916143

Overview
NameFC916143
Unique NameFC916143
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length934
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC916143 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.851e-36
Identity = 85/218 (38.99%), Postives = 124/218 (56.88%), Query Frame = 3
Query:  243 EHDRRFTIFKANLRRA-ARRQKLDPSATH--GVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVENGPLAVAINA 887
            EH+RRF +F  NL+   A   + D       G+ +F+DLT  EFR T+LG +   R     ++       +LP   DWREKGAV PVK+QG CGSCW+FS    +E  N L TG++++LSEQ+LV+C            +SGCNGGLM+ AF++ +K GG+  E+DYPY   D       + +K+  S+  F  V  ++++     V + P++VAI A
Sbjct:   70 EHERRFLVFWDNLKFVDAHNARADERGGFRLGMNRFADLTNEEFRATFLGAKVAERSRAAGERYRHDGVEELPESVDWREKGAVAPVKNQGQCGSCWAFSAVSTVESINQLVTGEMITLSEQELVEC-------STNGQNSGCNGGLMDDAFDFIIKNGGIDTEDDYPYKAVDGKCDINRENAKV-VSIDGFEDVPQNDEKSLQKAVAHQPVSVAIEA 279          
BLAST of FC916143 vs. ExPASy Swiss-Prot
Match: CYSP6_DICDI (Cysteine proteinase 6 OS=Dictyostelium discoideum GN=cprF PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.417e-36
Identity = 92/231 (39.83%), Postives = 125/231 (54.11%), Query Frame = 3
Query:  219 NKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDL-----PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATG--KLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANF-SVVSLDEDQIAANLVENGPLAVAINA 887
            ++ + S EE + RF IFKAN+               G+  F+D+T  E+R TYLG       P DA    + P+  +         DWR KGAV P+K+QG CG CWSFS TGA EGA ++A G   L S+SEQQL+DC            ++GC GGLM  AFEY +  GG+  E  YP+T       CK++ S I A ++++ +V S  E  +AA  V  GP +VAI+A
Sbjct:   37 HQRHYSSEEFNGRFNIFKANMDYINEWNTKGSETVLGLNVFADITNEEYRATYLGT------PFDASSLEMTPSEKVFGGVQANSVDWRAKGAVTPIKNQGECGGCWSFSATGATEGAQYIANGDSDLTSVSEQQLIDCSGSYG-------NNGCEGGLMTLAFEYIINNGGIDTESSYPFTANT--EKCKYNPSNIGAELSSYVNVTSGSESDLAAK-VTQGPTSVAIDA 251          
BLAST of FC916143 vs. ExPASy Swiss-Prot
Match: CYSP4_DICDI (Cysteine proteinase 4 OS=Dictyostelium discoideum GN=cprD PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 3.157e-36
Identity = 91/235 (38.72%), Postives = 128/235 (54.47%), Query Frame = 3
Query:  195 FSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPAD-FDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATG---KLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVENGPLAVAINA 887
            F+ + +   + Y+S EE + R+ IFK+N+    +          G+  F+D+T  E+R TYLG           ++  I  T   PA   DWR +GAV P+K+QG CG CWSFSTTG+ EGA+F+A+G    LVSLSEQ L+DC            ++GC GGLM  AFEY +   G+  E  YPYT  D G  CKF  S I A + ++  V+   +    +   N P++VAI+A
Sbjct:   30 FTNWMQAHQRTYSS-EEFNARYQIFKSNMDYVHQWNSKGGETVLGLNVFADITNQEYRTTYLGTPFDGSALIGTEEEKIFST---PAPTVDWRAQGAVTPIKNQGQCGGCWSFSTTGSTEGAHFIASGTKKDLVSLSEQNLIDCSKSYG-------NNGCEGGLMTLAFEYIINNKGIDTESSYPYTAED-GKECKFKTSNIGAQIVSYQNVTSGSEASLQSASNNAPVSVAIDA 252          
BLAST of FC916143 vs. ExPASy Swiss-Prot
Match: CYSP2_HOMAM (Digestive cysteine proteinase 2 OS=Homarus americanus GN=LCP2 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 4.123e-36
Identity = 94/256 (36.72%), Postives = 131/256 (51.17%), Query Frame = 3
Query:  174 LLGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKL----DPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVA-NFSVVSLDEDQIAANLVENGPLAVAINAVY--MQTYIGGSF 920
            L  A   +  FK K+ + Y   EE   R  IF+ N +      K     + +    + +F D+T  EF     G   +   P      P   T     + DWR KGAV PVKDQG CGSCW+FSTTG+LEG +FL TG L+SL+EQQLVDC     P+       GCNGG MN AF+Y     G+  E  YPY   D   +C+FD + +AA+ + + ++ S  E  +   + + GP++V I+A +   Q Y  G +
Sbjct:   13 LAAASPSWEHFKGKYGRQYVDAEEDSYRRVIFEQNQKYIEEFNKKYENGEVTFNLAMNKFGDMTLEEFNAVMKGNIPRRSAPVSVFY-PKKETGPQATEVDWRTKGAVTPVKDQGQCGSCWAFSTTGSLEGQHFLKTGSLISLAEQQLVDCSRPYGPQ-------GCNGGWMNDAFDYIKANNGIDTEAAYPYEARD--GSCRFDSNSVAATCSGHTNIASGSETGLQQAVRDIGPISVTIDAAHSSFQFYSSGVY 258          
BLAST of FC916143 vs. ExPASy Swiss-Prot
Match: CATL1_CERAE (Cathepsin L1 OS=Cercopithecus aethiops GN=CTSL1 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 4.123e-36
Identity = 92/238 (38.66%), Postives = 125/238 (52.52%), Query Frame = 3
Query:  186 EHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQ----FSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVENGPLAVAINA 887
            E  ++ +K   N+ Y   EE  RR  +++ N++      +      H  T     F D+T  EFR+   G + +        Q P+    + P   DWREKG V PVK+QG CGSCW+FS TGALEG  F  TGKLVSLSEQ LVDC     P+     + GCNGGLM+ AF+Y    GGL  EE YPY  T+   +CK++     A+   F  +   E  +   +   GP++VAI+A
Sbjct:   26 EAQWTKWKAMHNRLYGMNEEGWRR-AVWEKNMKMIELHNQEYSQGKHSFTMAMNTFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLF--YEAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCS---GPQG----NEGCNGGLMDYAFQYVADNGGLDSEESYPYEATE--ESCKYNPEYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDA 251          
BLAST of FC916143 vs. ExPASy Swiss-Prot
Match: CATL1_CANFA (Cathepsin L1 OS=Canis familiaris GN=CTSL1 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 7.033e-36
Identity = 91/232 (39.22%), Postives = 119/232 (51.29%), Query Frame = 3
Query:  204 FKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQ----FSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVENGPLAVAINA 887
            +K    + Y   EE  RR  +++ N++      +      HG T     F D+T  EFR+   G + +        Q P+    ++P   DWREKG V PVK+QG CGSCW+FS TGALEG  F  TGKLVSLSEQ LVDC            + GCNGGLM++AF Y    GGL  EE YPY G D    C +     AA+   F  +   E  +   +   GP++VAI+A
Sbjct:   32 WKATHRRLYGMNEEGWRR-AVWEKNMKMIELHNREYSQGKHGFTMAMNAFGDMTNEEFRQVMNGFQNQKHKKGKMFQEPLFA--EIPKSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSR-------AQGNEGCNGGLMDNAFRYVKDNGGLDSEESYPYLGRDT-ETCNYKPECSAANDTGFVDLPQREKALMKAVATLGPISVAIDA 252          
BLAST of FC916143 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 1.200e-35
Identity = 91/219 (41.55%), Postives = 123/219 (56.16%), Query Frame = 3
Query:  243 EHDRRFTIFKANLRRA-ARRQKLDPSATH--GVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAV-GPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVENGPLAVAINA 887
            EH+RRF +F  NL+   A   + D       G+ +F+DLT  EFR TYLG     R  +  +         LP   DWR+KGAV  PVK+QG CGSCW+FS   A+EG N + TG+LVSLSEQ+LV+C            +SGCNGG+M+ AF +  + GGL  EEDYPYT  D G      +S+   S+  F  V  +++      V + P++VAI+A
Sbjct:   84 EHERRFRVFWDNLKFVDAHNARADERGGFRLGMNRFADLTNGEFRATYLGTTPAGRGRRVGEAYRHDGVEALPDSVDWRDKGAVVAPVKNQGQCGSCWAFSAVAAVEGINKIVTGELVSLSEQELVECAR-------NGQNSGCNGGIMDDAFAFIARNGGLDTEEDYPYTAMD-GKCNLAKRSRKVVSIDGFEDVPENDELSLQKAVAHQPVSVAIDA 294          
BLAST of FC916143 vs. ExPASy Swiss-Prot
Match: CATV_NPVLD (Viral cathepsin OS=Lymantria dispar multicapsid nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.200e-35
Identity = 89/259 (34.36%), Postives = 141/259 (54.44%), Query Frame = 3
Query:  156 ESTNNDLLGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRR--AARRQKLD-PSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPI-LPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSK--IAASVANFSVVSLDEDQIAANLVENGPLAVAINAVYMQTYIGG 914
            E    +L  A  +F  F + +NK Y S  E ++R++IFK NL    A      D P+AT+ + +FSDL+ +E    + GL    R+        +  P +  P  FDWRE+  V  +K+QG+CG+CW+F+T  ++E    +   +L+ LSEQQL+DCD         S D GCNGGL+++AFE  ++ GG+  E DYP+ G  R   C  D+ +  + + V  +  V ++E+++   L   GP+ +AI+A  +  Y  G
Sbjct:   43 EGAAYNLQRAPDYFESFVENYNKNYTSDWEKNKRYSIFKDNLHEINAKNGNATDGPTATYKINKFSDLSKSELIAKFTGLSIPERVSNFCKTIILNQPPDKGPLHFDWREQNKVTSIKNQGACGACWAFATLASVESQFAMRHNRLIDLSEQQLIDCD---------SVDMGCNGGLLHTAFEEIMRMGGVQTELDYPFVG--RNRRCGLDRHRPYVVSLVGCYRYVMVNEEKLKDLLRAVGPIPMAIDAADIVNYYRG 290          
BLAST of FC916143 vs. ExPASy Swiss-Prot
Match: CATV_NPVCD (Viral cathepsin OS=Choristoneura fumiferana defective polyhedrosis virus GN=Vcath PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.567e-35
Identity = 90/250 (36.00%), Postives = 133/250 (53.20%), Query Frame = 3
Query:  171 DLLGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPI-LPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN-FSVVSLDEDQIAANLVENGPLAVAINAVYMQTYIGG 914
            DLL A  +F  F   FNK Y+S+ E   RF IF+ NL     +   D SA + + +FSDL+  E    Y GL   L+     +   +  P +  P +FDWR    V  VK+QG+CG+CW+F+T G+LE    +   +L++LSEQQL+DCD           D GC+GGL+++A+E  +  GG+  E DYPY   +    C+ + +K    V   +  V + E+++   L   GPL VAI+A  +  Y  G
Sbjct:   20 DLLKAPSYFEDFLHNFNKNYSSKSEKLHRFKIFQHNLEEIINKNLNDTSAQYEINKFSDLSKDETISKYTGLSLPLQNQNFCEVVVLNRPPDKGPLEFDWRRLNKVTSVKNQGTCGACWAFATLGSLESQFAIKHDQLINLSEQQLIDCDF---------VDMGCDGGLLHTAYEAVMNMGGIQAENDYPYEANNGD--CRLNAAKFVVKVKKCYRYVLMFEEKLKDLLRIVGPLPVAIDASDIVNYKRG 258          
BLAST of FC916143 vs. ExPASy Swiss-Prot
Match: CYSEP_RICCO (Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.046e-35
Identity = 89/224 (39.73%), Postives = 119/224 (53.12%), Query Frame = 3
Query:  234 SQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRL-----PKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKI-AASVANFSVVSLDEDQIAANLVENGPLAVAINA 887
            S  E  +RF +FK N        K+D      + +F+D+T  EFR TY G + K        P+          + +PA  DWR+KGAV  VKDQG CGSCW+FST  A+EG N + T KLVSLSEQ+LVDCD +         + GCNGGLM+ AFE+  + GG+  E +YPY   D    C   K    A S+     V  +++      V N P++VAI+A
Sbjct:   50 SLHEKQKRFNVFKHNAMHVHNANKMDKPYKLKLNKFADMTNHEFRNTYSGSKVKHHRMFRGGPRGNGTFMYEKVDTVPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTD--------QNQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYD--GTCDVSKENAPAVSIDGHENVPENDENALLKAVANQPVSVAIDA 263          
The following BLAST results are available for this feature:
BLAST of FC916143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
ORYB_ORYSJ1.851e-3638.99Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
CYSP6_DICDI2.417e-3639.83Cysteine proteinase 6 OS=Dictyostelium discoideum ... [more]
CYSP4_DICDI3.157e-3638.72Cysteine proteinase 4 OS=Dictyostelium discoideum ... [more]
CYSP2_HOMAM4.123e-3636.72Digestive cysteine proteinase 2 OS=Homarus america... [more]
CATL1_CERAE4.123e-3638.66Cathepsin L1 OS=Cercopithecus aethiops GN=CTSL1 PE... [more]
CATL1_CANFA7.033e-3639.22Cathepsin L1 OS=Canis familiaris GN=CTSL1 PE=2 SV=... [more]
CYSP1_ORYSJ1.200e-3541.55Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
CATV_NPVLD1.200e-3534.36Viral cathepsin OS=Lymantria dispar multicapsid nu... [more]
CATV_NPVCD1.567e-3536.00Viral cathepsin OS=Choristoneura fumiferana defect... [more]
CYSEP_RICCO2.046e-3539.73Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA87AF07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA87AF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC916143 ID=FC916143; Name=FC916143; organism=Citrus clementina; type=EST; length=934bp
CAGCATTGTCTAAAAACATGGGATCTAAAACAGTAGTTTTCTTTCTGGTC
TCTCTCGTCGTCGTCTCCGCCGTTTCATCAGGGACGTTGATCGACGATGT
TGATCAGCTGATCAGGCAAGTAACGGACGGCGGTGACGAGATCCTAAGCC
ACCACGAGAGCACCAACAACGACCTCTTGGGCGCAGAGCACCACTTCTCC
CTATTCAAGAAGAAGTTCAATAAAGCGTACGCTTCGCAGGAGGAGCACGA
CCGTAGGTTCACTATTTTCAAGGCCAACTTGCGACGCGCCGCGCGTCGCC
AGAAGCTCGACCCGAGCGCCACCCACGGCGTCACTCAGTTCTCCGACTTG
ACTCCGGCCGAGTTCCGCCGGACGTACCTTGGCCTCAGGAGGAAGCTGAG
GCTGCCTAAGGATGCGGATCAGGCGCCGATCTTGCCTACGAATGATTTGC
CGGCGGATTTTGATTGGAGAGAGAAGGGCGCTGTAGGCCCTGTTAAAGAT
CAGGGTTCATGCGGATCATGCTGGAGTTTCAGTACAACAGGGGCCTTGGA
AGGTGCTAACTTCCTGGCAACTGGAAAGCTTGTGAGCCTCAGTGAGCAAC
AGCTTGTGGATTGCGATCATGAGTGTGATCCTGAGGAACCAGGTTCTTGT
GATTCTGGATGCAATGGTGGGCTTATGAACAGTGCTTTTGAGTACACACT
CAAGGCTGGTGGGCTTATGCGGGAGGAAGACTATCCTTACACCGGCACTG
ATCGTGGCCACGCCTGCAAATTCGATAAGAGTAAGATTGCTGCCTCAGTG
GCCAACTTCAGTGTTGTCTCCCTTGATGAGGATCAAATTGCTGCCAATCT
TGTGGAAAATGGTCCCCTTGCAGTGGCCATCAATGCCGTGTACATGCAGA
CATACATTGGGGGGAGTTTCCTGCCCATACATAT
back to top