FC916149
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSN2_DANRE (Presenilin-2 OS=Danio rerio GN=psen2 PE=2 SV=2) HSP 1 Score: 88.5817 bits (218), Expect = 5.157e-17 Identity = 56/184 (30.43%), Postives = 93/184 (50.54%), Query Frame = 3 Query: 288 RTAANLVY--LERPDDSSTQKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEEL-PALVYEA 827 ++ L+Y E +S Q+L +VLN LV + +I +T +LVLLY Y F+ ++ S+ +L +D T ++++NF +VG++ + G P+ L+QAY++ + +MA F K LPEW+ W P PL++LVE A R+E + PAL+Y + Sbjct: 113 KSGQRLIYTPFEEDPNSVGQRLLNSVLNTLVMISVIVFMTIILVLLYKYRCYKFIHGWLILSSLMLLFWFSFMYLGEVFKTYNVAMDYPTLLMIIWNFGVVGMICIHWKG-PLRLQQAYLIVISALMALIFIKYLPEWSAWVILGAISIYDLIAVLCPKGPLRMLVETAQERNEPIFPALIYSS 295
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSN1_CANFA (Presenilin-1 OS=Canis familiaris GN=PSEN1 PE=2 SV=2) HSP 1 Score: 88.5817 bits (218), Expect = 5.157e-17 Identity = 56/184 (30.43%), Postives = 93/184 (50.54%), Query Frame = 3 Query: 288 RTAANLVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEEL-PALVYEA 827 R L+Y +D+ T Q+ ++LNA + + +I ++T LLV+LY Y + ++ S+ +L +D T +L++NF +VG++++ G P+ L+QAY++ + +MA F K LPEWT W P PL++LVE A R+E L PAL+Y + Sbjct: 107 RKDGQLIYTPFTEDTETVGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFLFSFIYLGEVFKTYNVAMDYITVALLIWNFGVVGMIAIHWKG-PLRLQQAYLIMISALMALVFIKYLPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNETLFPALIYSS 289
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSN1_DANRE (Presenilin-1 OS=Danio rerio GN=psen1 PE=1 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 8.796e-17 Identity = 54/179 (30.17%), Postives = 94/179 (52.51%), Query Frame = 3 Query: 303 LVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEEL-PALVYEA 827 L+Y +D+ T Q+ ++LNA++ + +I ++T +LV+LY Y ++ ++ FS +L +D FT ++++NF +VG++ + G P+ L+QAY++ + +MA F K LPEWT W P PL++LVE A R+E + PAL+Y + Sbjct: 102 LIYTPFREDTETVGQRALHSMLNAIIMISVIVVMTLVLVVLYKYRCYKVIQAWLFFSNLLLLFFFSLIYLGEVFKTYNVAMDYFTLALIIWNFGVVGMICIHWKG-PLRLQQAYLIMISALMALVFIKYLPEWTAWLILAAISVYDLLAVLCPKGPLRILVETAQERNEAIFPALIYSS 279
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSN1_BOVIN (Presenilin-1 OS=Bos taurus GN=PSEN1 PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.149e-16 Identity = 56/184 (30.43%), Postives = 94/184 (51.09%), Query Frame = 3 Query: 288 RTAANLVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEEL-PALVYEA 827 R L+Y +D+ T Q+ ++LNA++ + +I I+T LLV+LY Y + ++ S+ +L +D + +L++NF +VG++++ G P+ L+QAY++ + +MA F K LPEWT W P PL++LVE A R+E L PAL+Y + Sbjct: 109 RKDGQLIYTPFTEDTETVAQRALHSILNAVIMISVIVIMTILLVVLYKYRCYKVIHAWLIVSSLLLLFFFSFIYLGEVFKTYNVAMDYISVALLIWNFGVVGMIAIHWKG-PLRLQQAYLIMISALMALVFIKYLPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNETLFPALIYSS 291
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSN2_XENLA (Presenilin-2 OS=Xenopus laevis GN=psen2 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.960e-16 Identity = 54/179 (30.17%), Postives = 93/179 (51.96%), Query Frame = 3 Query: 303 LVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEEL-PALVYEA 827 L+Y +D+++ ++L +VLN L+ + +I ++T LVLLY Y F+ ++ S+ +L +D T F++++NF VG++ + G P+ L+QAY++ + +MA F K LPEW+ W P PL++LVE A R+E + PAL+Y + Sbjct: 122 LIYTPFSEDTTSVGERLLNSVLNTLIMISVILVMTIFLVLLYKYRCYKFIHGWLILSSLMLLFMFTYIYLSEVFKTYNIAMDYPTLFMVIWNFGAVGMICIHWKG-PLQLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDLLAVLCPKGPLRMLVETAQERNEPIFPALIYSS 299
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSN1_CHICK (Presenilin-1 OS=Gallus gallus GN=PSEN1 PE=1 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.559e-16 Identity = 54/184 (29.35%), Postives = 92/184 (50.00%), Query Frame = 3 Query: 288 RTAANLVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEEL-PALVYEA 827 R L+Y +++ T Q+ ++LNA + + +I ++T LLV+LY Y + ++ S+ +L +D T ++++NF +VG++ + G P+ L+QAY++ + +MA F K LPEWT W P PL++LVE A R+E L PAL+Y + Sbjct: 109 RKDGQLIYTPFTEETDTIGQRALNSILNAAIMISVIIVMTILLVVLYKYRCYKVIHGWLIISSLLLLFFFSFIYLGEVFKTYNVAMDYITVALIIWNFGVVGMICIHWKG-PLRLQQAYLIMISALMALVFIKYLPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNETLFPALIYSS 291
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSN2_RAT (Presenilin-2 OS=Rattus norvegicus GN=Psen2 PE=2 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 3.342e-16 Identity = 54/179 (30.17%), Postives = 92/179 (51.40%), Query Frame = 3 Query: 303 LVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEEL-PALVYEA 827 L+Y +D+ + Q+L +VLN L+ + +I ++T LV+LY Y F+ ++ S+ +L +D T F+ ++NF VG++ + G P++L+QAY++ + +MA F K LPEW+ W P PL++LVE A R+E + PAL+Y + Sbjct: 119 LIYTPFTEDTPSVGQRLLNSVLNTLIMISVIVVMTIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVFKTYNVAMDYPTLFLAVWNFGAVGMVCIHWKG-PLVLQQAYLIVISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNEPIFPALIYSS 296
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSN2_MOUSE (Presenilin-2 OS=Mus musculus GN=Psen2 PE=1 SV=3) HSP 1 Score: 85.8853 bits (211), Expect = 3.342e-16 Identity = 54/179 (30.17%), Postives = 92/179 (51.40%), Query Frame = 3 Query: 303 LVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEEL-PALVYEA 827 L+Y +D+ + Q+L +VLN L+ + +I ++T LV+LY Y F+ ++ S+ +L +D T F+ ++NF VG++ + G P++L+QAY++ + +MA F K LPEW+ W P PL++LVE A R+E + PAL+Y + Sbjct: 119 LIYTPFTEDTPSVGQRLLNSVLNTLIMISVIVVMTIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLFLAVWNFGAVGMVCIHWKG-PLVLQQAYLIVISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNEPIFPALIYSS 296
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSN_DROME (Presenilin homolog OS=Drosophila melanogaster GN=Psn PE=1 SV=2) HSP 1 Score: 85.5001 bits (210), Expect = 4.365e-16 Identity = 49/164 (29.88%), Postives = 86/164 (52.44%), Query Frame = 3 Query: 342 KLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEEL-PALVYEA 827 K A+ N+L+ + ++ ++TFLL++LY + ++ S+F +L P+D T ++++NF +VG++S+ G P+ L+Q Y++ + +MA F K LPEWT W P PL++LVE A R+E++ PAL+Y + Sbjct: 150 KFWSALANSLILMSVVVVMTFLLIVLYKKRCYRIIHGWLILSSFMLLFIFTYLYLEELLRAYNIPMDYPTALLIMWNFGVVGMMSIHWQG-PLRLQQGYLIFVAALMALVFIKYLPEWTAWAVLAAISIWDLIAVLSPRGPLRILVETAQERNEQIFPALIYSS 312
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSNB_DICDI (Presenilin-B OS=Dictyostelium discoideum GN=psenB PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 4.365e-16 Identity = 52/163 (31.90%), Postives = 79/163 (48.47%), Query Frame = 3 Query: 384 LIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTKLPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEELPALVYEARPTVSDNERNRRSGL 872 +I + T VLLY Y L ++ S +LG+ G P+D T L+FNFT+ G++ +F + Q Y+V + ++MA T+LP+WT + P PLK+LVEL+ R+E +PALVYE T ++ N + GL Sbjct: 234 MIIVTTVAFVLLYKYRCLKILYGWLFLSVGMMLGSFGTTFFQAMLSAANLPLDYITFAFLIFNFTVCGIIGVFWYAHQ-YVNQLYLVIISVLMAISLTRLPQWTIFTLLVIVAIYDLFAVLCPRGPLKVLVELSQERNENIPALVYE---TGKGSDSNLKLGL 392 The following BLAST results are available for this feature:
BLAST of FC916149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 27
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Sequences
The
following sequences are available for this feature:
EST sequence >FC916149 ID=FC916149; Name=FC916149; organism=Citrus clementina; type=EST; length=882bpback to top |