FC916149

Overview
NameFC916149
Unique NameFC916149
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length882
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSN2_DANRE (Presenilin-2 OS=Danio rerio GN=psen2 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 5.157e-17
Identity = 56/184 (30.43%), Postives = 93/184 (50.54%), Query Frame = 3
Query:  288 RTAANLVY--LERPDDSSTQKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEEL-PALVYEA 827
            ++   L+Y   E   +S  Q+L  +VLN LV + +I  +T +LVLLY Y    F+  ++  S+  +L                  +D  T  ++++NF +VG++ +   G P+ L+QAY++ +  +MA  F K LPEW+ W                P  PL++LVE A  R+E + PAL+Y +
Sbjct:  113 KSGQRLIYTPFEEDPNSVGQRLLNSVLNTLVMISVIVFMTIILVLLYKYRCYKFIHGWLILSSLMLLFWFSFMYLGEVFKTYNVAMDYPTLLMIIWNFGVVGMICIHWKG-PLRLQQAYLIVISALMALIFIKYLPEWSAWVILGAISIYDLIAVLCPKGPLRMLVETAQERNEPIFPALIYSS 295          
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSN1_CANFA (Presenilin-1 OS=Canis familiaris GN=PSEN1 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 5.157e-17
Identity = 56/184 (30.43%), Postives = 93/184 (50.54%), Query Frame = 3
Query:  288 RTAANLVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEEL-PALVYEA 827
            R    L+Y    +D+ T  Q+   ++LNA + + +I ++T LLV+LY Y     +  ++  S+  +L                  +D  T  +L++NF +VG++++   G P+ L+QAY++ +  +MA  F K LPEWT W                P  PL++LVE A  R+E L PAL+Y +
Sbjct:  107 RKDGQLIYTPFTEDTETVGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFLFSFIYLGEVFKTYNVAMDYITVALLIWNFGVVGMIAIHWKG-PLRLQQAYLIMISALMALVFIKYLPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNETLFPALIYSS 289          
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSN1_DANRE (Presenilin-1 OS=Danio rerio GN=psen1 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.796e-17
Identity = 54/179 (30.17%), Postives = 94/179 (52.51%), Query Frame = 3
Query:  303 LVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEEL-PALVYEA 827
            L+Y    +D+ T  Q+   ++LNA++ + +I ++T +LV+LY Y     ++ ++ FS   +L                  +D FT  ++++NF +VG++ +   G P+ L+QAY++ +  +MA  F K LPEWT W                P  PL++LVE A  R+E + PAL+Y +
Sbjct:  102 LIYTPFREDTETVGQRALHSMLNAIIMISVIVVMTLVLVVLYKYRCYKVIQAWLFFSNLLLLFFFSLIYLGEVFKTYNVAMDYFTLALIIWNFGVVGMICIHWKG-PLRLQQAYLIMISALMALVFIKYLPEWTAWLILAAISVYDLLAVLCPKGPLRILVETAQERNEAIFPALIYSS 279          
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSN1_BOVIN (Presenilin-1 OS=Bos taurus GN=PSEN1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.149e-16
Identity = 56/184 (30.43%), Postives = 94/184 (51.09%), Query Frame = 3
Query:  288 RTAANLVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEEL-PALVYEA 827
            R    L+Y    +D+ T  Q+   ++LNA++ + +I I+T LLV+LY Y     +  ++  S+  +L                  +D  +  +L++NF +VG++++   G P+ L+QAY++ +  +MA  F K LPEWT W                P  PL++LVE A  R+E L PAL+Y +
Sbjct:  109 RKDGQLIYTPFTEDTETVAQRALHSILNAVIMISVIVIMTILLVVLYKYRCYKVIHAWLIVSSLLLLFFFSFIYLGEVFKTYNVAMDYISVALLIWNFGVVGMIAIHWKG-PLRLQQAYLIMISALMALVFIKYLPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNETLFPALIYSS 291          
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSN2_XENLA (Presenilin-2 OS=Xenopus laevis GN=psen2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.960e-16
Identity = 54/179 (30.17%), Postives = 93/179 (51.96%), Query Frame = 3
Query:  303 LVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEEL-PALVYEA 827
            L+Y    +D+++  ++L  +VLN L+ + +I ++T  LVLLY Y    F+  ++  S+  +L                  +D  T F++++NF  VG++ +   G P+ L+QAY++ +  +MA  F K LPEW+ W                P  PL++LVE A  R+E + PAL+Y +
Sbjct:  122 LIYTPFSEDTTSVGERLLNSVLNTLIMISVILVMTIFLVLLYKYRCYKFIHGWLILSSLMLLFMFTYIYLSEVFKTYNIAMDYPTLFMVIWNFGAVGMICIHWKG-PLQLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDLLAVLCPKGPLRMLVETAQERNEPIFPALIYSS 299          
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSN1_CHICK (Presenilin-1 OS=Gallus gallus GN=PSEN1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.559e-16
Identity = 54/184 (29.35%), Postives = 92/184 (50.00%), Query Frame = 3
Query:  288 RTAANLVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEEL-PALVYEA 827
            R    L+Y    +++ T  Q+   ++LNA + + +I ++T LLV+LY Y     +  ++  S+  +L                  +D  T  ++++NF +VG++ +   G P+ L+QAY++ +  +MA  F K LPEWT W                P  PL++LVE A  R+E L PAL+Y +
Sbjct:  109 RKDGQLIYTPFTEETDTIGQRALNSILNAAIMISVIIVMTILLVVLYKYRCYKVIHGWLIISSLLLLFFFSFIYLGEVFKTYNVAMDYITVALIIWNFGVVGMICIHWKG-PLRLQQAYLIMISALMALVFIKYLPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNETLFPALIYSS 291          
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSN2_RAT (Presenilin-2 OS=Rattus norvegicus GN=Psen2 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.342e-16
Identity = 54/179 (30.17%), Postives = 92/179 (51.40%), Query Frame = 3
Query:  303 LVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEEL-PALVYEA 827
            L+Y    +D+ +  Q+L  +VLN L+ + +I ++T  LV+LY Y    F+  ++  S+  +L                  +D  T F+ ++NF  VG++ +   G P++L+QAY++ +  +MA  F K LPEW+ W                P  PL++LVE A  R+E + PAL+Y +
Sbjct:  119 LIYTPFTEDTPSVGQRLLNSVLNTLIMISVIVVMTIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVFKTYNVAMDYPTLFLAVWNFGAVGMVCIHWKG-PLVLQQAYLIVISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNEPIFPALIYSS 296          
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSN2_MOUSE (Presenilin-2 OS=Mus musculus GN=Psen2 PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 3.342e-16
Identity = 54/179 (30.17%), Postives = 92/179 (51.40%), Query Frame = 3
Query:  303 LVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEEL-PALVYEA 827
            L+Y    +D+ +  Q+L  +VLN L+ + +I ++T  LV+LY Y    F+  ++  S+  +L                  +D  T F+ ++NF  VG++ +   G P++L+QAY++ +  +MA  F K LPEW+ W                P  PL++LVE A  R+E + PAL+Y +
Sbjct:  119 LIYTPFTEDTPSVGQRLLNSVLNTLIMISVIVVMTIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLFLAVWNFGAVGMVCIHWKG-PLVLQQAYLIVISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNEPIFPALIYSS 296          
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSN_DROME (Presenilin homolog OS=Drosophila melanogaster GN=Psn PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 4.365e-16
Identity = 49/164 (29.88%), Postives = 86/164 (52.44%), Query Frame = 3
Query:  342 KLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEEL-PALVYEA 827
            K   A+ N+L+ + ++ ++TFLL++LY       +  ++  S+F +L                 P+D  T  ++++NF +VG++S+   G P+ L+Q Y++ +  +MA  F K LPEWT W                P  PL++LVE A  R+E++ PAL+Y +
Sbjct:  150 KFWSALANSLILMSVVVVMTFLLIVLYKKRCYRIIHGWLILSSFMLLFIFTYLYLEELLRAYNIPMDYPTALLIMWNFGVVGMMSIHWQG-PLRLQQGYLIFVAALMALVFIKYLPEWTAWAVLAAISIWDLIAVLSPRGPLRILVETAQERNEQIFPALIYSS 312          
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSNB_DICDI (Presenilin-B OS=Dictyostelium discoideum GN=psenB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.365e-16
Identity = 52/163 (31.90%), Postives = 79/163 (48.47%), Query Frame = 3
Query:  384 LIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTKLPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEELPALVYEARPTVSDNERNRRSGL 872
            +I + T   VLLY Y     L  ++  S   +LG+ G             P+D  T   L+FNFT+ G++ +F       + Q Y+V + ++MA   T+LP+WT +                P  PLK+LVEL+  R+E +PALVYE   T   ++ N + GL
Sbjct:  234 MIIVTTVAFVLLYKYRCLKILYGWLFLSVGMMLGSFGTTFFQAMLSAANLPLDYITFAFLIFNFTVCGIIGVFWYAHQ-YVNQLYLVIISVLMAISLTRLPQWTIFTLLVIVAIYDLFAVLCPRGPLKVLVELSQERNENIPALVYE---TGKGSDSNLKLGL 392          
The following BLAST results are available for this feature:
BLAST of FC916149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
PSN2_DANRE5.157e-1730.43Presenilin-2 OS=Danio rerio GN=psen2 PE=2 SV=2[more]
PSN1_CANFA5.157e-1730.43Presenilin-1 OS=Canis familiaris GN=PSEN1 PE=2 SV=... [more]
PSN1_DANRE8.796e-1730.17Presenilin-1 OS=Danio rerio GN=psen1 PE=1 SV=1[more]
PSN1_BOVIN1.149e-1630.43Presenilin-1 OS=Bos taurus GN=PSEN1 PE=2 SV=1[more]
PSN2_XENLA1.960e-1630.17Presenilin-2 OS=Xenopus laevis GN=psen2 PE=2 SV=1[more]
PSN1_CHICK2.559e-1629.35Presenilin-1 OS=Gallus gallus GN=PSEN1 PE=1 SV=1[more]
PSN2_RAT3.342e-1630.17Presenilin-2 OS=Rattus norvegicus GN=Psen2 PE=2 SV... [more]
PSN2_MOUSE3.342e-1630.17Presenilin-2 OS=Mus musculus GN=Psen2 PE=1 SV=3[more]
PSN_DROME4.365e-1629.88Presenilin homolog OS=Drosophila melanogaster GN=P... [more]
PSNB_DICDI4.365e-1631.90Presenilin-B OS=Dictyostelium discoideum GN=psenB ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA15BH01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15BH01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC916149 ID=FC916149; Name=FC916149; organism=Citrus clementina; type=EST; length=882bp
TTCGAAAAGCATCATAAGATTATTCCCCCTAATCGCACTTCTCCCATTTG
ATTGATGATAGATTCTATCTTTCGTCCCAGAAGAAAAGAAAAAGAAAAAG
AAAGAAAAAAAAATGCAGTGACGAAAGTCGTTAGGTAGCAGCAATGGAGT
CGAGCATTTTAGATAGCATCGGAAGCGAGATCATCGGCGTGATGACGCCG
GTCTCCCTCTGCATGCTCCTTGTGGTTCTCTTAGTCTACTCTCTTTCCCC
ATCGGAGCAGTCCTTGTCCGGTGCCTCCGATCCATTCCGGACCGCCGCCA
ATCTCGTGTACCTCGAACGCCCCGACGACTCCTCCACCCAGAAGCTCGAG
GGCGCCGTCCTCAACGCCCTTGTCTTCGTCATCCTCATCGCCATCGTCAC
TTTCCTCCTCGTCCTCCTTTATTACTATAACTTCACCAACTTCTTGAAGA
ATTACGTGCGCTTCTCCGCCTTTTTCGTCTTAGGTACAATGGGAGGTTCG
ATCTTTTTGTCGATCATTCAGCAATTCTCTATACCTGTCGATGCATTTAC
ATGCTTTGTACTGCTTTTTAACTTCACTATTGTGGGTGTGTTGTCTCTGT
TTTCGGGTGGGATACCGATTCTGTTGAGGCAAGCGTATATGGTGTGCATG
GGAATCATTATGGCAGCCTGGTTTACAAAGCTGCCCGAGTGGACTACGTG
GGCCTTGCTACTGGCATTGGCTTTATATGATCTGTTTGCAGTTTTGGCGC
CTGGTGAGCCCCTTAAGTTGTTGGTGGAGTTGGCCTCTAGTCGAGATGAG
GAACTTCCTGCTTTGGTGTATGAAGCTCGGCCAACGGTTTCAGATAATGA
GAGAAACCGAAGATCAGGCTTGAGGTTTTTGC
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