FC916149
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSN2_PIG (Presenilin-2 OS=Sus scrofa GN=PSEN2 PE=1 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 5.701e-16 Identity = 54/179 (30.17%), Postives = 92/179 (51.40%), Query Frame = 3 Query: 303 LVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEEL-PALVYEA 827 L+Y +D+ + Q+L +VLN L+ + +I ++T LV+LY Y F+ ++ S+ +L +D T F+ ++NF VG++ + G P++L+QAY++ + +MA F K LPEW+ W P PL++LVE A R+E + PAL+Y + Sbjct: 119 LIYTPFTEDTPSVGQRLLNSVLNTLIMISVIVVMTIFLVVLYKYRCYKFIHGWLITSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLFLTVWNFGAVGMVCIHWKG-PLVLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNEPIFPALIYSS 296
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSN2_MICMU (Presenilin-2 (Fragment) OS=Microcebus murinus GN=PSEN2 PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 7.446e-16 Identity = 54/179 (30.17%), Postives = 91/179 (50.84%), Query Frame = 3 Query: 303 LVYLERPDD--SSTQKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEEL-PALVYEA 827 L+Y +D S +Q+L +VLN L+ + +I ++T LV+LY Y F+ ++ S+ +L +D T + ++NF VG++ + G P++L+QAY++ + +MA F K LPEW+ W P PL++LVE A R+E + PAL+Y + Sbjct: 119 LIYTPFTEDTPSVSQRLLNSVLNTLIMISVIVVMTIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLVLTVWNFGAVGMVCIHWKG-PLMLQQAYLIAISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNEPIFPALIYSS 296
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSN2_BOVIN (Presenilin-2 OS=Bos taurus GN=PSEN2 PE=2 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 9.725e-16 Identity = 54/179 (30.17%), Postives = 91/179 (50.84%), Query Frame = 3 Query: 303 LVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEEL-PALVYEA 827 L+Y +D+ + Q+L +VLN L+ + +I +T LV+LY Y F+ ++ S+ +L +D T F+ ++NF VG++ + G P++L+QAY++ + +MA F K LPEW+ W P PL++LVE A R+E + PAL+Y + Sbjct: 120 LIYTPFSEDTPSVGQRLLNSVLNTLIMISVIVTMTIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLFLTVWNFGAVGMVCIHWKG-PLVLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNEPIFPALIYSS 297
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSN2_HUMAN (Presenilin-2 OS=Homo sapiens GN=PSEN2 PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.659e-15 Identity = 53/179 (29.61%), Postives = 91/179 (50.84%), Query Frame = 3 Query: 303 LVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEEL-PALVYEA 827 L+Y +D+ + Q+L +VLN L+ + +I ++T LV+LY Y F+ ++ S+ +L +D T + ++NF VG++ + G P++L+QAY++ + +MA F K LPEW+ W P PL++LVE A R+E + PAL+Y + Sbjct: 119 LIYTPFTEDTPSVGQRLLNSVLNTLIMISVIVVMTIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLLLTVWNFGAVGMVCIHWKG-PLVLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNEPIFPALIYSS 296
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSN2_PONAB (Presenilin-2 OS=Pongo abelii GN=PSEN2 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 4.826e-15 Identity = 53/179 (29.61%), Postives = 90/179 (50.28%), Query Frame = 3 Query: 303 LVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEEL-PALVYEA 827 L+Y +D+ + Q+L +VLN L+ + +I +T LV+LY Y F+ ++ S+ +L +D T + ++NF VG++ + G P++L+QAY++ + +MA F K LPEW+ W P PL++LVE A R+E + PAL+Y + Sbjct: 119 LIYTPFTEDTPSVGQRLLNSVLNTLIMISVIVAMTIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLLLTVWNFGAVGMVCIHWKG-PLVLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNEPIFPALIYSS 296
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSN2_CHICK (Presenilin-2 OS=Gallus gallus GN=PSEN2 PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.075e-14 Identity = 50/179 (27.93%), Postives = 90/179 (50.28%), Query Frame = 3 Query: 303 LVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEEL-PALVYEA 827 L+Y +D+ + Q+L +VLN ++ + +I ++T LV+LY Y F+ ++ S+F +L +D T ++++NF VG++ + G P+ L+QAY++ + +M F K LPEW+ W P PL++L E A R++ + PAL+Y + Sbjct: 125 LIYTPFSEDTPSVGQRLLNSVLNTIIMISVIVVMTVFLVVLYKYRCYKFIHGWLILSSFMLLFLFTYIYLGEVLKTYNVAMDYPTVILIIWNFGAVGMIRIHWKG-PLQLQQAYLIMISALMVLVFIKYLPEWSAWVILGAISIYDLIAVLCPKGPLRMLXETAQERNQPIFPALIYSS 302
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSN_CAEEL (Presenilin sel-12 OS=Caenorhabditis elegans GN=sel-12 PE=1 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 7.705e-13 Identity = 50/172 (29.07%), Postives = 81/172 (47.09%), Query Frame = 3 Query: 318 RPDDSSTQKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEEL-PALVYEA 827 R DS +K ++ NALV + ++ ++T LL++ Y Y F + ++ S+F +L A L N+ ++G++ + G P+ L+Q Y++ M +MA F K LPEWT W P PL+ LVE A R+E + PAL+Y + Sbjct: 89 RETDSIVEKGLMSLGNALVMLCVVVLMTVLLIVFYKYKFYKLIHGWLIVSSFLLLFLFTTIYVQEVLKSFDVSPSALLVLFGLGNYGVLGMMCIHWKG-PLRLQQFYLITMSALMALVFIKYLPEWTVWFVLFVISVWDLVAVLTPKGPLRYLVETAQERNEPIFPALIYSS 259 The following BLAST results are available for this feature:
BLAST of FC916149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 27
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC916149 ID=FC916149; Name=FC916149; organism=Citrus clementina; type=EST; length=882bpback to top |