FC916149

Overview
NameFC916149
Unique NameFC916149
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length882
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13906 contig Ccv1_Contig13906:1..882. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSN2_PIG (Presenilin-2 OS=Sus scrofa GN=PSEN2 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.701e-16
Identity = 54/179 (30.17%), Postives = 92/179 (51.40%), Query Frame = 3
Query:  303 LVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEEL-PALVYEA 827
            L+Y    +D+ +  Q+L  +VLN L+ + +I ++T  LV+LY Y    F+  ++  S+  +L                  +D  T F+ ++NF  VG++ +   G P++L+QAY++ +  +MA  F K LPEW+ W                P  PL++LVE A  R+E + PAL+Y +
Sbjct:  119 LIYTPFTEDTPSVGQRLLNSVLNTLIMISVIVVMTIFLVVLYKYRCYKFIHGWLITSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLFLTVWNFGAVGMVCIHWKG-PLVLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNEPIFPALIYSS 296          
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSN2_MICMU (Presenilin-2 (Fragment) OS=Microcebus murinus GN=PSEN2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.446e-16
Identity = 54/179 (30.17%), Postives = 91/179 (50.84%), Query Frame = 3
Query:  303 LVYLERPDD--SSTQKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEEL-PALVYEA 827
            L+Y    +D  S +Q+L  +VLN L+ + +I ++T  LV+LY Y    F+  ++  S+  +L                  +D  T  + ++NF  VG++ +   G P++L+QAY++ +  +MA  F K LPEW+ W                P  PL++LVE A  R+E + PAL+Y +
Sbjct:  119 LIYTPFTEDTPSVSQRLLNSVLNTLIMISVIVVMTIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLVLTVWNFGAVGMVCIHWKG-PLMLQQAYLIAISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNEPIFPALIYSS 296          
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSN2_BOVIN (Presenilin-2 OS=Bos taurus GN=PSEN2 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 9.725e-16
Identity = 54/179 (30.17%), Postives = 91/179 (50.84%), Query Frame = 3
Query:  303 LVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEEL-PALVYEA 827
            L+Y    +D+ +  Q+L  +VLN L+ + +I  +T  LV+LY Y    F+  ++  S+  +L                  +D  T F+ ++NF  VG++ +   G P++L+QAY++ +  +MA  F K LPEW+ W                P  PL++LVE A  R+E + PAL+Y +
Sbjct:  120 LIYTPFSEDTPSVGQRLLNSVLNTLIMISVIVTMTIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLFLTVWNFGAVGMVCIHWKG-PLVLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNEPIFPALIYSS 297          
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSN2_HUMAN (Presenilin-2 OS=Homo sapiens GN=PSEN2 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.659e-15
Identity = 53/179 (29.61%), Postives = 91/179 (50.84%), Query Frame = 3
Query:  303 LVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEEL-PALVYEA 827
            L+Y    +D+ +  Q+L  +VLN L+ + +I ++T  LV+LY Y    F+  ++  S+  +L                  +D  T  + ++NF  VG++ +   G P++L+QAY++ +  +MA  F K LPEW+ W                P  PL++LVE A  R+E + PAL+Y +
Sbjct:  119 LIYTPFTEDTPSVGQRLLNSVLNTLIMISVIVVMTIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLLLTVWNFGAVGMVCIHWKG-PLVLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNEPIFPALIYSS 296          
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSN2_PONAB (Presenilin-2 OS=Pongo abelii GN=PSEN2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.826e-15
Identity = 53/179 (29.61%), Postives = 90/179 (50.28%), Query Frame = 3
Query:  303 LVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEEL-PALVYEA 827
            L+Y    +D+ +  Q+L  +VLN L+ + +I  +T  LV+LY Y    F+  ++  S+  +L                  +D  T  + ++NF  VG++ +   G P++L+QAY++ +  +MA  F K LPEW+ W                P  PL++LVE A  R+E + PAL+Y +
Sbjct:  119 LIYTPFTEDTPSVGQRLLNSVLNTLIMISVIVAMTIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLLLTVWNFGAVGMVCIHWKG-PLVLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNEPIFPALIYSS 296          
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSN2_CHICK (Presenilin-2 OS=Gallus gallus GN=PSEN2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.075e-14
Identity = 50/179 (27.93%), Postives = 90/179 (50.28%), Query Frame = 3
Query:  303 LVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEEL-PALVYEA 827
            L+Y    +D+ +  Q+L  +VLN ++ + +I ++T  LV+LY Y    F+  ++  S+F +L                  +D  T  ++++NF  VG++ +   G P+ L+QAY++ +  +M   F K LPEW+ W                P  PL++L E A  R++ + PAL+Y +
Sbjct:  125 LIYTPFSEDTPSVGQRLLNSVLNTIIMISVIVVMTVFLVVLYKYRCYKFIHGWLILSSFMLLFLFTYIYLGEVLKTYNVAMDYPTVILIIWNFGAVGMIRIHWKG-PLQLQQAYLIMISALMVLVFIKYLPEWSAWVILGAISIYDLIAVLCPKGPLRMLXETAQERNQPIFPALIYSS 302          
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSN_CAEEL (Presenilin sel-12 OS=Caenorhabditis elegans GN=sel-12 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 7.705e-13
Identity = 50/172 (29.07%), Postives = 81/172 (47.09%), Query Frame = 3
Query:  318 RPDDSSTQKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEEL-PALVYEA 827
            R  DS  +K   ++ NALV + ++ ++T LL++ Y Y F   +  ++  S+F +L                    A      L N+ ++G++ +   G P+ L+Q Y++ M  +MA  F K LPEWT W                P  PL+ LVE A  R+E + PAL+Y +
Sbjct:   89 RETDSIVEKGLMSLGNALVMLCVVVLMTVLLIVFYKYKFYKLIHGWLIVSSFLLLFLFTTIYVQEVLKSFDVSPSALLVLFGLGNYGVLGMMCIHWKG-PLRLQQFYLITMSALMALVFIKYLPEWTVWFVLFVISVWDLVAVLTPKGPLRYLVETAQERNEPIFPALIYSS 259          
The following BLAST results are available for this feature:
BLAST of FC916149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
PSN2_PIG5.701e-1630.17Presenilin-2 OS=Sus scrofa GN=PSEN2 PE=1 SV=1[more]
PSN2_MICMU7.446e-1630.17Presenilin-2 (Fragment) OS=Microcebus murinus GN=P... [more]
PSN2_BOVIN9.725e-1630.17Presenilin-2 OS=Bos taurus GN=PSEN2 PE=2 SV=2[more]
PSN2_HUMAN1.659e-1529.61Presenilin-2 OS=Homo sapiens GN=PSEN2 PE=1 SV=1[more]
PSN2_PONAB4.826e-1529.61Presenilin-2 OS=Pongo abelii GN=PSEN2 PE=2 SV=1[more]
PSN2_CHICK1.075e-1427.93Presenilin-2 OS=Gallus gallus GN=PSEN2 PE=2 SV=1[more]
PSN_CAEEL7.705e-1329.07Presenilin sel-12 OS=Caenorhabditis elegans GN=sel... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA15BH01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15BH01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC916149 ID=FC916149; Name=FC916149; organism=Citrus clementina; type=EST; length=882bp
TTCGAAAAGCATCATAAGATTATTCCCCCTAATCGCACTTCTCCCATTTG
ATTGATGATAGATTCTATCTTTCGTCCCAGAAGAAAAGAAAAAGAAAAAG
AAAGAAAAAAAAATGCAGTGACGAAAGTCGTTAGGTAGCAGCAATGGAGT
CGAGCATTTTAGATAGCATCGGAAGCGAGATCATCGGCGTGATGACGCCG
GTCTCCCTCTGCATGCTCCTTGTGGTTCTCTTAGTCTACTCTCTTTCCCC
ATCGGAGCAGTCCTTGTCCGGTGCCTCCGATCCATTCCGGACCGCCGCCA
ATCTCGTGTACCTCGAACGCCCCGACGACTCCTCCACCCAGAAGCTCGAG
GGCGCCGTCCTCAACGCCCTTGTCTTCGTCATCCTCATCGCCATCGTCAC
TTTCCTCCTCGTCCTCCTTTATTACTATAACTTCACCAACTTCTTGAAGA
ATTACGTGCGCTTCTCCGCCTTTTTCGTCTTAGGTACAATGGGAGGTTCG
ATCTTTTTGTCGATCATTCAGCAATTCTCTATACCTGTCGATGCATTTAC
ATGCTTTGTACTGCTTTTTAACTTCACTATTGTGGGTGTGTTGTCTCTGT
TTTCGGGTGGGATACCGATTCTGTTGAGGCAAGCGTATATGGTGTGCATG
GGAATCATTATGGCAGCCTGGTTTACAAAGCTGCCCGAGTGGACTACGTG
GGCCTTGCTACTGGCATTGGCTTTATATGATCTGTTTGCAGTTTTGGCGC
CTGGTGAGCCCCTTAAGTTGTTGGTGGAGTTGGCCTCTAGTCGAGATGAG
GAACTTCCTGCTTTGGTGTATGAAGCTCGGCCAACGGTTTCAGATAATGA
GAGAAACCGAAGATCAGGCTTGAGGTTTTTGC
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