FC917080

Overview
NameFC917080
Unique NameFC917080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length886
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: HAS1_CANAL (ATP-dependent RNA helicase HAS1 OS=Candida albicans GN=HAS1 PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 9.078e-62
Identity = 120/164 (73.17%), Postives = 143/164 (87.20%), Query Frame = 1
Query:  394 NLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            + S  T  AI  +GFT MT+VQA+TIPPLL+GRDVLGAA+TGSGKTLAFLIP+IE+L +LK KP NGT +II+TPTRELALQIF + R+LM  FHSQT G+V+GGA+R+ EA +LAKGVNL+VATPGRLLDHL+NT+ FVF NLKALVIDEADRILE+GFE+EM
Sbjct:  114 DFSEPTMKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLYSLKIKPRNGTAVIIITPTRELALQIFGVARELM-QFHSQTCGIVIGGADRRQEATKLAKGVNLLVATPGRLLDHLKNTQ-FVFSNLKALVIDEADRILEIGFEDEM 275          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: HAS1_LODEL (ATP-dependent RNA helicase HAS1 OS=Lodderomyces elongisporus GN=HAS1 PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 1.186e-61
Identity = 117/164 (71.34%), Postives = 141/164 (85.98%), Query Frame = 1
Query:  394 NLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            + S  T  AI  +GF  MT+VQA+TIPPLL+GRDVLGAA+TGSGKTLAFL+P++E+L +LK KP NGT +II+TPTRELALQIF + R LM  +HSQT G+V+GGA+R+ EA +LAKGVNL+VATPGRLLDHL+NT+ FVF NLKALVIDEADRILE+GFEEEM
Sbjct:   99 DFSEPTMKAIKEMGFQKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLLPAVELLYSLKIKPRNGTAVIIITPTRELALQIFGVARQLM-EYHSQTCGIVIGGADRRQEATKLAKGVNLLVATPGRLLDHLKNTQGFVFLNLKALVIDEADRILEIGFEEEM 261          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: HAS1_GIBZE (ATP-dependent RNA helicase HAS1 OS=Gibberella zeae GN=HAS1 PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 5.884e-61
Identity = 117/165 (70.91%), Postives = 145/165 (87.88%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            L LS +T  AI+ + FT MTE+Q R IPP L+GRDVLGAA+TGSGKTLAFLIP IE+LS+L+FKP NGTG+I+++PTRELALQIF + R+LM   HSQT G+V+GGANR++EA++LAKGVNL++ATPGRLLDHL+NT  FVF+NLK+LVIDEADRILE+GFE+EM
Sbjct:  120 LKLSEKTMKAINEMKFTKMTEIQRRGIPPSLAGRDVLGAAKTGSGKTLAFLIPVIEMLSSLRFKPRNGTGVIVVSPTRELALQIFGVARELM-AHHSQTYGIVIGGANRRAEAEKLAKGVNLLIATPGRLLDHLQNT-PFVFKNLKSLVIDEADRILEIGFEDEM 282          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: HAS1_CHAGB (ATP-dependent RNA helicase HAS1 OS=Chaetomium globosum GN=HAS1 PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 5.884e-61
Identity = 117/165 (70.91%), Postives = 145/165 (87.88%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            LNLS +T  +I+ +GFT MTE+Q R IPPLL+G+DVLGAA+TGSGKTLAFLIP+IE+L++L+FKP NGTG+I++TPTRELALQIF + R+LM   HSQT GVV+GGAN ++E D+L KGVNL++ATPGRLLDHLR   SFVF+NLK+L+IDEADRILEVGFE+EM
Sbjct:  117 LNLSDKTMMSINEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLNSLRFKPRNGTGVIVVTPTRELALQIFGVARELMKN-HSQTYGVVIGGANIRAEEDKLGKGVNLLIATPGRLLDHLRR-GSFVFKNLKSLIIDEADRILEVGFEDEM 279          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: HAS1_ASPTN (ATP-dependent RNA helicase has1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=has1 PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 1.004e-60
Identity = 112/165 (67.88%), Postives = 142/165 (86.06%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            LNLS  T  AI  +GF +MTE+Q RTIPP L+GRD+LGAA+TGSGKTLAFLIP++E+LS L+FKP NGTG+II+TPTRELALQIF + ++L   FHSQT G+V+GGANR++EA++L KGVNL++ATPGRLLDHL+NT+ FV++N K LV+DEADR L+VGFE E+
Sbjct:  103 LNLSEPTMKAIRQMGFETMTEIQQRTIPPTLAGRDILGAAKTGSGKTLAFLIPAVEMLSALRFKPRNGTGVIIITPTRELALQIFGVAKELC-EFHSQTYGIVIGGANRRAEAEKLNKGVNLLIATPGRLLDHLQNTQGFVYKNCKVLVLDEADRCLDVGFEAEL 266          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: HAS1_YARLI (ATP-dependent RNA helicase HAS1 OS=Yarrowia lipolytica GN=HAS1 PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.449e-59
Identity = 111/166 (66.87%), Postives = 141/166 (84.94%), Query Frame = 1
Query:  388 SLNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            ++ LS  T  ++  +GF +MT VQ +TIPPLL+GRDVLGAA+TGSGKTLAFLIP+IE+L  LKFKP NGTG+I+++PTRELALQI+ + RDLM   HSQT G+V+GG NR+ E ++L KGVNL+V TPGRLLDHL+N++ FVF+NLKAL+IDEADRILE+GFE+EM
Sbjct:  135 TIPLSENTMQSLKDMGFETMTPVQEKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEMLRKLKFKPRNGTGVIVVSPTRELALQIYGVARDLMAN-HSQTLGIVIGGNNRRQEEEKLNKGVNLLVCTPGRLLDHLQNSQGFVFKNLKALIIDEADRILEIGFEQEM 299          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DDX18_DICDI (Probable ATP-dependent RNA helicase ddx18 OS=Dictyostelium discoideum GN=ddx18 PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.772e-57
Identity = 108/166 (65.06%), Postives = 139/166 (83.73%), Query Frame = 1
Query:  388 SLNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            +L +   T+ +I+ +GF  MT +QA++I PLL G+D+LGAARTGSGKTLAFLIP+IE+L    FKP NGTG+II++PTRELALQI+ + R+LM  +H+QT G+V+GGA++K E +RL KGVNL+VATPGRLLDHL+NTK F+ +NLK L+IDEADRILEVGFEEEM
Sbjct:  123 NLPIEENTKKSIEEMGFKKMTPIQAKSILPLLEGKDLLGAARTGSGKTLAFLIPAIEVLVKSNFKPRNGTGVIIISPTRELALQIYGVARELM-KYHTQTHGIVIGGASKKPEEERLEKGVNLLVATPGRLLDHLQNTKGFITKNLKCLIIDEADRILEVGFEEEM 287          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: RH27_ARATH (DEAD-box ATP-dependent RNA helicase 27 OS=Arabidopsis thaliana GN=RH27 PE=2 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 1.075e-54
Identity = 103/166 (62.05%), Postives = 134/166 (80.72%), Query Frame = 1
Query:  388 SLNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            SL+LS  T  +I  +GF  MT++QA+ IPPL+ G DVLGAARTGSGKTLAFLIP++E+L  +KF P NGTG++++ PTRELA+Q + + ++L+  +HSQT G V+GG  RK+EA+ LAKGVNL+VATPGRLLDHL NT  F+F+NLK LV+DEADRILE  FEE++
Sbjct:  158 SLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELL-KYHSQTVGKVIGGEKRKTEAEILAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDL 322          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: RH51_ARATH (DEAD-box ATP-dependent RNA helicase 51 OS=Arabidopsis thaliana GN=RH51 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.458e-53
Identity = 103/166 (62.05%), Postives = 134/166 (80.72%), Query Frame = 1
Query:  388 SLNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            SL+LS QT  AI  +GF  MT++QA +I PLL G+DVLGAARTGSGKTLAFLIP++E+L   +F P NGTG+I++ PTRELA+Q  ++  +L+   HSQT  +V+GG NR+SEA R+A G NL++ATPGRLLDHL+NTK+F++++LK LVIDEADRILE  FEE+M
Sbjct:   93 SLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTGVIVICPTRELAIQTKNVAEELL-KHHSQTVSMVIGGNNRRSEAQRIASGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDM 257          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DDX18_DROME (Probable ATP-dependent RNA helicase pitchoune OS=Drosophila melanogaster GN=pit PE=2 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 4.516e-53
Identity = 94/163 (57.67%), Postives = 137/163 (84.05%), Query Frame = 1
Query:  397 LSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            +S  T  AI  +GFT MTE+Q++++ PLL GRD++GAA+TGSGKTLAFLIP++E+++ L+F P NGTG+II++PTREL++Q F ++++LM   H  T G+VMGG+NR+ E+++L KG+N++VATPGRLLDHL+N+  F+++NL+ L+IDE DRILE+GFEEE+
Sbjct:  194 VSEATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELINKLRFMPRNGTGVIIISPTRELSMQTFGVLKELM-AHHHHTYGLVMGGSNRQVESEKLGKGINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEEL 355          
The following BLAST results are available for this feature:
BLAST of FC917080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HAS1_CANAL9.078e-6273.17ATP-dependent RNA helicase HAS1 OS=Candida albican... [more]
HAS1_LODEL1.186e-6171.34ATP-dependent RNA helicase HAS1 OS=Lodderomyces el... [more]
HAS1_GIBZE5.884e-6170.91ATP-dependent RNA helicase HAS1 OS=Gibberella zeae... [more]
HAS1_CHAGB5.884e-6170.91ATP-dependent RNA helicase HAS1 OS=Chaetomium glob... [more]
HAS1_ASPTN1.004e-6067.88ATP-dependent RNA helicase has1 OS=Aspergillus ter... [more]
HAS1_YARLI1.449e-5966.87ATP-dependent RNA helicase HAS1 OS=Yarrowia lipoly... [more]
DDX18_DICDI1.772e-5765.06Probable ATP-dependent RNA helicase ddx18 OS=Dicty... [more]
RH27_ARATH1.075e-5462.05DEAD-box ATP-dependent RNA helicase 27 OS=Arabidop... [more]
RH51_ARATH3.458e-5362.05DEAD-box ATP-dependent RNA helicase 51 OS=Arabidop... [more]
DDX18_DROME4.516e-5357.67Probable ATP-dependent RNA helicase pitchoune OS=D... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA71BH03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA71BH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917080 ID=FC917080; Name=FC917080; organism=Citrus clementina; type=EST; length=886bp
CATACCTTGACATCCCTCGTCATGACACCCGTAGCATCAACATCGGCTGT
TCAGCAAAAGAAACGCAAGAGGTCAAAGCACGGCGGGAGCACTGCCGTCG
CCTCGACCTCGACCTCGACCATAGAGGCGAGTCCGGTGAAAAAGGTCAAG
AGCAAGGGAGAGGGCAAGCAACGTCAAGCTGTTGCTGCCGAGGAGAAGGA
AGATGACGATGAGGATGCTGTCGAGGAGCAGGAAGAGTCTGCTGCCGGGC
CGTCTGGGGGACAAGCTATGGACACGACCCCAGCCTCTGCTCCTGTCTCT
GCCGAAGCTGGTCCTTCGACAACCTCGGCCGCATCGGACACACCTACTAC
CACCGCCGGAACGGCCCTGACCTCTCAAACTTTCACCTCCCTCAACCTCT
CTTCCCAAACTCAATCCGCCATCGACGCCCTCGGATTCACCTCGATGACA
GAAGTTCAAGCCCGGACCATCCCTCCTCTCCTCTCCGGACGTGACGTCCT
CGGTGCAGCCCGAACCGGATCCGGCAAGACCCTGGCTTTCCTGATCCCTT
CCATCGAAATCCTCAGTACTCTCAAGTTCAAACCGGCCAACGGGACGGGT
ATCATCATCCTCACGCCAACCAGGGAACTGGCCCTTCAGATCTTCTCCAT
CGTGAGGGATCTGATGGGTGGATTCCACAGTCAGACGTCTGGAGTAGTCA
TGGGCGGTGCGAATAGGAAATCCGAGGCGGATAGGTTGGCCAAGGGGGTC
AACCTGATCGTGGCTACTCCGGGGAGGTTGTTGGATCACTTGAGGAACAC
CAAATCCTTCGTTTTTCAGAATCTCAAAGCGCTCGTCATCGACGAGGCGG
ACCGGATCTTGGAAGTCGGGTTCGAGGAGGAAATGA
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