FC917080

Overview
NameFC917080
Unique NameFC917080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length886
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DBP4_ASPTN (ATP-dependent RNA helicase dbp4 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=dbp4 PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.724e-36
Identity = 79/163 (48.47%), Postives = 117/163 (71.78%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEE 879
            L LS  T S + A  + ++T++Q+R +   L GRD+LGAA+TGSGKTLAFLIP +E L   ++   +G G +IL+PTRELA+QIF ++R  +G +H  ++G+V+GG + K E +RL K +N++V TPGR+L HL  T  F   NL+ LV+DEADRI+++GF++
Sbjct:   51 LPLSEPTLSGLSASHYKTLTDIQSRAVSHALKGRDILGAAKTGSGKTLAFLIPVLENLYRKQWAEHDGLGALILSPTRELAIQIFEVLRK-VGRYHHFSAGLVIGGKSLKEEQERLGK-MNILVCTPGRMLQHLDQTALFDTYNLQMLVLDEADRIMDMGFQK 211          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DBP4_ASPCL (ATP-dependent RNA helicase dbp4 OS=Aspergillus clavatus GN=dbp4 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.724e-36
Identity = 79/163 (48.47%), Postives = 118/163 (72.39%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEE 879
            L LS  T S + +  F ++T++Q+R I   L GRDVLGAA+TGSGKTLAFL+P +E L   ++   +G G +IL+PTRELA+QIF ++R + G +H+ ++G+V+GG + + E +RL + +N++V TPGR+L HL  T  F   NL+ LV+DEADRIL++GF++
Sbjct:   54 LPLSEPTLSGLTSSHFKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPVLENLYRRQWAEHDGLGALILSPTRELAIQIFEVLRKI-GRYHTFSAGLVIGGKSLREEQERLGR-MNILVCTPGRMLQHLDQTALFDTYNLQMLVLDEADRILDLGFQQ 214          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DBP4_NEUCR (ATP-dependent RNA helicase dbp-4 OS=Neurospora crassa GN=dbp-4 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.252e-36
Identity = 80/163 (49.08%), Postives = 115/163 (70.55%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEE 879
            L L   T S + A  F  +T+VQ   IP  L G+D+LGAARTGSGKTLAFL+P +E L   ++   +G G +I++PTRELA+QIF ++R + G  HS ++G+V+GG + K EA+RL + +N++V TPGR+L HL  T  F   NL+ LV+DEADRI+++GF++
Sbjct:   62 LPLCEPTASGLRASHFEVLTDVQRAAIPLALKGQDILGAARTGSGKTLAFLVPVLEKLYRARWTEYDGLGALIISPTRELAVQIFEVLRKI-GRNHSFSAGLVIGGKSLKEEAERLGR-MNILVCTPGRMLQHLDQTAGFDVDNLQMLVLDEADRIMDMGFQQ 222          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DBP4_ASPFU (ATP-dependent RNA helicase dbp4 OS=Aspergillus fumigatus GN=dbp4 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.252e-36
Identity = 78/163 (47.85%), Postives = 118/163 (72.39%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEE 879
            L LS  T S + +  + ++T++Q+R I   L GRD+LGAA+TGSGKTLAFL+P +E L   ++   +G G +IL+PTRELA+QIF ++R + G +H+ ++G+V+GG + K E +RL + +N++V TPGR+L HL  T  F   NL+ LV+DEADRIL++GF++
Sbjct:   52 LPLSEPTASGLASSHYKTLTDIQSRAISHALKGRDILGAAKTGSGKTLAFLVPVLENLYRKQWAEHDGLGALILSPTRELAIQIFEVLRKI-GRYHTFSAGLVIGGKSLKEEQERLGR-MNILVCTPGRMLQHLDQTALFDTYNLQMLVLDEADRILDLGFQQ 212          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DBP4_EMENI (ATP-dependent RNA helicase dbp4 OS=Emericella nidulans GN=dbp4 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.941e-36
Identity = 77/163 (47.24%), Postives = 118/163 (72.39%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEE 879
            L +S  T S + +  F ++T++Q+R I   L GRDVLGAA+TGSGKTLAFL+P +E L   ++   +G G +I++PTRELA+QIF ++R + G +H+ ++G+V+GG + K E +RL + +N++V TPGR+L HL  T  F   NL+ LV+DEADRI+++GF++
Sbjct:   53 LPISEPTLSGLTSSHFKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPILENLYRKQWSDHDGLGALIISPTRELAIQIFEVLRKI-GRYHTFSAGLVIGGKSLKEEQERLGR-MNILVCTPGRMLQHLDQTAFFETYNLQMLVLDEADRIMDMGFQK 213          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DBP4_ASPNC (ATP-dependent RNA helicase dbp4 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp4 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.941e-36
Identity = 77/163 (47.24%), Postives = 118/163 (72.39%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEE 879
            L LS  T S + +  + ++T++Q+R I   L GRD+LGAA+TGSGKTLAFLIP +E L   ++   +G G ++L+PTRELA+QIF ++R  +G +H+ ++G+V+GG + + E +RL + +N++V TPGR+L HL  T  F   NL+ LV+DEADRIL++GF++
Sbjct:   52 LPLSEPTASGLASSHYKTLTDIQSRAISHALKGRDILGAAKTGSGKTLAFLIPILENLYRKQWSEHDGLGALVLSPTRELAIQIFEVLRK-VGRYHTFSAGLVIGGKSLREEQERLGR-MNILVCTPGRMLQHLDQTSFFETHNLQMLVLDEADRILDMGFQK 212          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DBP4_GIBZE (ATP-dependent RNA helicase DBP4 OS=Gibberella zeae GN=DBP4 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.841e-36
Identity = 79/162 (48.77%), Postives = 115/162 (70.99%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFE 876
            L LS  T   ++   F ++T+VQAR +P  L G+D+LGAA+TGSGKTLAFLIP +E L   ++   +G G +I++PTRELA QIF ++R  +G  HS ++G+V+GG + K EA+RL + +N++V TPGR+L H   T  F   NL+ LV+DEADRI+++GF+
Sbjct:   56 LPLSVPTAEGLEIAHFQTLTDVQARAVPLALKGKDILGAAKTGSGKTLAFLIPVLEKLYRAQWTEFDGLGALIISPTRELAAQIFEVLRK-VGTKHSFSAGLVIGGKSLKEEAERLDR-MNILVCTPGRMLQHFDQTAGFDANNLQILVLDEADRIMDMGFQ 215          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DBP4_CHAGB (ATP-dependent RNA helicase DBP4 OS=Chaetomium globosum GN=DBP4 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.551e-36
Identity = 80/162 (49.38%), Postives = 114/162 (70.37%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFE 876
            L L   T S + A  F  +T+VQ   IP  L GRD+LGAA+TGSGKTLAFL+P +E L   K+   +G G +I++PTRELA+QIF ++R + G  H  ++G+V+GG + K EA+RL + +N++V TPGR+L HL  T +F   NL+ LV+DEADRI+++GF+
Sbjct:   58 LPLCEATASGLRASHFEVLTDVQRAAIPLALKGRDILGAAKTGSGKTLAFLVPVLEKLYHAKWTEYDGLGALIISPTRELAVQIFEVLRKI-GRNHFFSAGLVIGGKSLKEEAERLGR-MNILVCTPGRMLQHLDQTANFDVNNLQILVLDEADRIMDMGFQ 217          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DDX31_HUMAN (Probable ATP-dependent RNA helicase DDX31 OS=Homo sapiens GN=DDX31 PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 1.117e-35
Identity = 77/154 (50.00%), Postives = 110/154 (71.43%), Query Frame = 1
Query:  430 LGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTL--KFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            L  +SMT VQ ++IP LL GRD L  ++TGSGKTLA+ IP ++ L  +  K + ++G   ++L PTRELALQ F  V+ L+  F     GV+MGG  RKSE  RL KG+N++++TPGRL+DH+++TK+  F  L+ LV DEADRIL++GFE+++
Sbjct:  249 LKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDI 402          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DBP4_COCIM (ATP-dependent RNA helicase DBP4 OS=Coccidioides immitis GN=DBP4 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.117e-35
Identity = 73/162 (45.06%), Postives = 118/162 (72.84%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFE 876
            L LS  T   + A  F ++T++Q+R +P  + GRD+LGAA+TGSGKTLAFL+P +E L   ++   +G G +IL+PTRELA+QIF ++R + G +H+ ++G+V+GG + + E +RL + +N++V TPGR+L H+  T +F   +++ LV+DEADRI+++GF+
Sbjct:   53 LPLSDATLQGLSASHFKTLTDIQSRAVPHAIKGRDILGAAKTGSGKTLAFLVPVLENLYRKQWTEYDGLGALILSPTRELAIQIFEVLRKI-GRYHTFSAGLVIGGKSLQEEQERLGR-MNILVCTPGRMLQHMDQTAAFDTAHIQMLVLDEADRIMDMGFQ 212          
The following BLAST results are available for this feature:
BLAST of FC917080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP4_ASPTN1.724e-3648.47ATP-dependent RNA helicase dbp4 OS=Aspergillus ter... [more]
DBP4_ASPCL1.724e-3648.47ATP-dependent RNA helicase dbp4 OS=Aspergillus cla... [more]
DBP4_NEUCR2.252e-3649.08ATP-dependent RNA helicase dbp-4 OS=Neurospora cra... [more]
DBP4_ASPFU2.252e-3647.85ATP-dependent RNA helicase dbp4 OS=Aspergillus fum... [more]
DBP4_EMENI2.941e-3647.24ATP-dependent RNA helicase dbp4 OS=Emericella nidu... [more]
DBP4_ASPNC2.941e-3647.24ATP-dependent RNA helicase dbp4 OS=Aspergillus nig... [more]
DBP4_GIBZE3.841e-3648.77ATP-dependent RNA helicase DBP4 OS=Gibberella zeae... [more]
DBP4_CHAGB6.551e-3649.38ATP-dependent RNA helicase DBP4 OS=Chaetomium glob... [more]
DDX31_HUMAN1.117e-3550.00Probable ATP-dependent RNA helicase DDX31 OS=Homo ... [more]
DBP4_COCIM1.117e-3545.06ATP-dependent RNA helicase DBP4 OS=Coccidioides im... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA71BH03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA71BH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917080 ID=FC917080; Name=FC917080; organism=Citrus clementina; type=EST; length=886bp
CATACCTTGACATCCCTCGTCATGACACCCGTAGCATCAACATCGGCTGT
TCAGCAAAAGAAACGCAAGAGGTCAAAGCACGGCGGGAGCACTGCCGTCG
CCTCGACCTCGACCTCGACCATAGAGGCGAGTCCGGTGAAAAAGGTCAAG
AGCAAGGGAGAGGGCAAGCAACGTCAAGCTGTTGCTGCCGAGGAGAAGGA
AGATGACGATGAGGATGCTGTCGAGGAGCAGGAAGAGTCTGCTGCCGGGC
CGTCTGGGGGACAAGCTATGGACACGACCCCAGCCTCTGCTCCTGTCTCT
GCCGAAGCTGGTCCTTCGACAACCTCGGCCGCATCGGACACACCTACTAC
CACCGCCGGAACGGCCCTGACCTCTCAAACTTTCACCTCCCTCAACCTCT
CTTCCCAAACTCAATCCGCCATCGACGCCCTCGGATTCACCTCGATGACA
GAAGTTCAAGCCCGGACCATCCCTCCTCTCCTCTCCGGACGTGACGTCCT
CGGTGCAGCCCGAACCGGATCCGGCAAGACCCTGGCTTTCCTGATCCCTT
CCATCGAAATCCTCAGTACTCTCAAGTTCAAACCGGCCAACGGGACGGGT
ATCATCATCCTCACGCCAACCAGGGAACTGGCCCTTCAGATCTTCTCCAT
CGTGAGGGATCTGATGGGTGGATTCCACAGTCAGACGTCTGGAGTAGTCA
TGGGCGGTGCGAATAGGAAATCCGAGGCGGATAGGTTGGCCAAGGGGGTC
AACCTGATCGTGGCTACTCCGGGGAGGTTGTTGGATCACTTGAGGAACAC
CAAATCCTTCGTTTTTCAGAATCTCAAAGCGCTCGTCATCGACGAGGCGG
ACCGGATCTTGGAAGTCGGGTTCGAGGAGGAAATGA
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