FC917080
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DDX21_MOUSE (Nucleolar RNA helicase 2 OS=Mus musculus GN=Ddx21 PE=1 SV=2) HSP 1 Score: 98.5969 bits (244), Expect = 5.039e-20 Identity = 56/165 (33.94%), Postives = 93/165 (56.36%), Query Frame = 1 Query: 397 LSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEIL--STLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885 +S +T + A G + +QA+T + SG+D++ ARTG+GKT +F IP IE L + K +++L PTRELA Q+ D+ + GG + +R+ G++++V TPGR+ DHL+N K LK +V+DE D++L++GF +++ Sbjct: 265 ISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDIT---KKLSVACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGK-LDLTKLKHVVLDEVDQMLDMGFADQV 425
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DBP8_PICST (ATP-dependent RNA helicase DBP8 OS=Pichia stipitis GN=DBP8 PE=3 SV=2) HSP 1 Score: 98.5969 bits (244), Expect = 5.039e-20 Identity = 65/164 (39.63%), Postives = 90/164 (54.88%), Query Frame = 1 Query: 391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNL---KALVIDEADRILEVGF 873 L +S A+ A+ + T +Q+ IP +LSG D +G A+TGSGKT+AF P + S F G ++LTPTRELALQI L + + S VV+GG + + L K + ++ATPGRL DH+ N+ L K LV+DEADR+L F Sbjct: 6 LGVSRWLSEALAAMKIHTPTAIQSGCIPKILSGHDCIGGAKTGSGKTIAFAAPMLTQWSEDPF----GIFGLVLTPTRELALQIAEQFAALGASMNIKIS-VVVGGEDFVKQTLELQKKPHFVIATPGRLADHILNSGEETISGLRRIKYLVLDEADRLLSNSF 164
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DBP3_NEUCR (ATP-dependent RNA helicase dbp-3 OS=Neurospora crassa GN=dbp-3 PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 5.039e-20 Identity = 62/158 (39.24%), Postives = 97/158 (61.39%), Query Frame = 1 Query: 436 FTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTL---KFKPANGTG---IIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAK--GVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885 +T+ T +Q+ + P LSGRDV+G A TGSGKT+AF +P +E L++ KF + T +I++PTRELA+Q + + L ++ + GG+++ + + L K GV++I ATPGRL D L + S N+ V+DEADR+L+ GF E++ Sbjct: 199 YTNPTPIQSASWPFSLSGRDVIGIAETGSGKTMAFSLPCVESLASRPKPKFNSRDRTAHPRAVIVSPTRELAMQTHAALSGL-ASLVGLSAVCIFGGSDKNEQRNLLYKNNGVDIITATPGRLKDFL-SEGSISLANVSFAVLDEADRMLDRGFSEDI 354
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: SPB4_PICGU (ATP-dependent rRNA helicase SPB4 OS=Pichia guilliermondii GN=SPB4 PE=3 SV=2) HSP 1 Score: 98.2117 bits (243), Expect = 6.582e-20 Identity = 63/172 (36.63%), Postives = 101/172 (58.72%), Query Frame = 1 Query: 394 NLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGI--IILTPTRELALQIFSIVRDLMGGFHS-----QTSGVVMGGANRKSEADRLAKG-VNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885 +L AID+LGF SMT VQA TIP +DV+ A TGSGKTLAF IP +E ++ + +G+ I+++PTRELA QI ++ L+ + +T +V A + + + A+ +I+ATPGRLLD ++ + ++ +V+DEADR+L++ F+ ++ Sbjct: 20 SLQPWIHDAIDSLGFRSMTPVQASTIPLFCGNKDVVVEAVTGSGKTLAFAIPVLERVTKCMKENRGSSGLYGIVISPTRELANQINTVFHTLLQFYPEDQPPIKTQLIVGSLATVREDLNAFAENKPQIIIATPGRLLDFF-SSNAVKRSTVEMVVLDEADRLLDISFQNDV 190
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: RHLB_VIBSL (ATP-dependent RNA helicase rhlB OS=Vibrio splendidus (strain LGP32) GN=rhlB PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 6.582e-20 Identity = 56/168 (33.33%), Postives = 101/168 (60.12%), Query Frame = 1 Query: 391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSI-EILSTLKF--KPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885 L+L Q ++ GF T +QA +P LL+G+D+ G A+TG+GKTLAFL + +L T + + N II+ PTRELA+QI++ L+ + + + GG + + ++ +G ++++ T GR++D + K F +++A+V+DEADR+ ++GF +++ Sbjct: 14 LDLLPQVIEGLEKKGFDYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLKTPEHEGRKPNQPRAIIMAPTRELAIQIYNDADSLVASTGIK-AALAYGGESYDKQLGKIEEGADILIGTTGRIIDFYKQ-KVFNLNHIQAVVLDEADRMFDLGFIKDI 179
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: RHLB_TOLAT (ATP-dependent RNA helicase rhlB OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=rhlB PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 6.582e-20 Identity = 59/170 (34.71%), Postives = 100/170 (58.82%), Query Frame = 1 Query: 391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEIL---STLKFKPANGTGIIILTPTRELALQIF--SIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885 L L Q + ++A GF + T +QA TIP LL+G+++ G A+TG+GKT+AFL + L S + N ++I+ PTRELA+QI+ ++ GF G+ GG + L +GV+L++ T GR++D+L+ ++ +V+DEADR+ ++GF +++ Sbjct: 14 LGLEPQVLAGVEAKGFHNCTPIQAETIPLLLTGKNIAGQAQTGTGKTIAFLAGTFNYLLTHSASAERRQNQPRVLIMAPTRELAVQIYNDAVPMSESCGF---KMGLAYGGDGYDKQLAVLQEGVDLLIGTTGRIIDYLKQ-GIIDLGAIQVVVLDEADRMFDLGFIKDI 179
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: RHLB_AERHH (ATP-dependent RNA helicase rhlB OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=rhlB PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 6.582e-20 Identity = 56/168 (33.33%), Postives = 98/168 (58.33%), Query Frame = 1 Query: 391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILST---LKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885 + L + + +++ GF T +QA ++P L+ G D+ G A+TG+GKTLAFL + L T K + N II+ PTRELA+QI++ + M G+ GG + L +GV++++ T GR++D+ + +K N++ +V+DEADR+ ++GF +++ Sbjct: 14 MGLEPEVLAGLESKGFHYCTPIQALSLPLLVEGHDLAGQAQTGTGKTLAFLAATFNYLLTHPLTKPRLINQPRAIIMAPTRELAVQIYNDA-ESMSASTGLKLGLAYGGEGYDKQLAVLEQGVDILIGTTGRIIDYFK-SKVIDLSNIQVVVLDEADRMFDLGFIKDI 179
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: PRP28_LODEL (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Lodderomyces elongisporus GN=PRP28 PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 6.582e-20 Identity = 66/176 (37.50%), Postives = 98/176 (55.68%), Query Frame = 1 Query: 397 LSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLK------FKPANGTGIIILTPTRELALQIFSIVRDL--MGGFHSQTSGVVMGGANRKSEADRL-----AKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885 L + +++ + GF T VQ +IP L RDV+G A TGSGKTLAFL+P + LS + K N ++L PTRELALQI GF+ + ++GG + D++ +GV+++V TPGRLLD + K F LV+DEADR++++GFE+++ Sbjct: 192 LDPKILASLKSFGFRQPTPVQRASIPISLELRDVVGVAETGSGKTLAFLLPLLHYLSRVDGNYLNYEKVRNEPLALVLAPTRELALQITQEAEKFGKQLGFNVLS---IIGGRQYQETMDQIDNMIVGRGVHIVVGTPGRLLDSVER-KILNFSKCYYLVMDEADRMIDMGFEKDL 363
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DBPA_ECOLI (ATP-independent RNA helicase dbpA OS=Escherichia coli (strain K12) GN=dbpA PE=1 SV=2) HSP 1 Score: 98.2117 bits (243), Expect = 6.582e-20 Identity = 60/153 (39.22%), Postives = 90/153 (58.82%), Query Frame = 1 Query: 421 IDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEE 879 ++ LG+ +MT VQA +P +L+G+DV A+TGSGKT AF + ++ + F+ T ++L PTRELA Q+ +R L + + GG + D L ++IVATPGRLLDHL+ + L LV+DEADR+L++GF + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQ----TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQK-GTVSLDALNTLVMDEADRMLDMGFSD 165
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DBP9_SCHPO (ATP-dependent RNA helicase dbp9 OS=Schizosaccharomyces pombe GN=dbp9 PE=2 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 6.582e-20 Identity = 65/168 (38.69%), Postives = 92/168 (54.76%), Query Frame = 1 Query: 394 NLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGI--IILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADR--LAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885 NL + Q AI F T VQ+ TIP L G+D++ ARTGSGKT A+LIP +E+L K N GI ++L PTRELA Q+++++ L F S+ + N R L ++++ATP R + H+ + LK LVIDEAD +L G+ E+M Sbjct: 20 NLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLT-AFCSKHIRFINVATNSSDTVQRPLLLDLPDIVIATPSRCVVHVA-SGVLPLDKLKFLVIDEADLMLSFGYNEDM 185 The following BLAST results are available for this feature:
BLAST of FC917080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC917080 ID=FC917080; Name=FC917080; organism=Citrus clementina; type=EST; length=886bpback to top |