FC917080

Overview
NameFC917080
Unique NameFC917080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length886
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DDX21_MOUSE (Nucleolar RNA helicase 2 OS=Mus musculus GN=Ddx21 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 5.039e-20
Identity = 56/165 (33.94%), Postives = 93/165 (56.36%), Query Frame = 1
Query:  397 LSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEIL--STLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            +S +T   + A G   +  +QA+T   + SG+D++  ARTG+GKT +F IP IE L     + K      +++L PTRELA Q+     D+       +     GG     + +R+  G++++V TPGR+ DHL+N K      LK +V+DE D++L++GF +++
Sbjct:  265 ISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDIT---KKLSVACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGK-LDLTKLKHVVLDEVDQMLDMGFADQV 425          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DBP8_PICST (ATP-dependent RNA helicase DBP8 OS=Pichia stipitis GN=DBP8 PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 5.039e-20
Identity = 65/164 (39.63%), Postives = 90/164 (54.88%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNL---KALVIDEADRILEVGF 873
            L +S     A+ A+   + T +Q+  IP +LSG D +G A+TGSGKT+AF  P +   S   F    G   ++LTPTRELALQI      L    + + S VV+GG +   +   L K  + ++ATPGRL DH+ N+       L   K LV+DEADR+L   F
Sbjct:    6 LGVSRWLSEALAAMKIHTPTAIQSGCIPKILSGHDCIGGAKTGSGKTIAFAAPMLTQWSEDPF----GIFGLVLTPTRELALQIAEQFAALGASMNIKIS-VVVGGEDFVKQTLELQKKPHFVIATPGRLADHILNSGEETISGLRRIKYLVLDEADRLLSNSF 164          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DBP3_NEUCR (ATP-dependent RNA helicase dbp-3 OS=Neurospora crassa GN=dbp-3 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.039e-20
Identity = 62/158 (39.24%), Postives = 97/158 (61.39%), Query Frame = 1
Query:  436 FTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTL---KFKPANGTG---IIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAK--GVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            +T+ T +Q+ + P  LSGRDV+G A TGSGKT+AF +P +E L++    KF   + T     +I++PTRELA+Q  + +  L       ++  + GG+++  + + L K  GV++I ATPGRL D L +  S    N+   V+DEADR+L+ GF E++
Sbjct:  199 YTNPTPIQSASWPFSLSGRDVIGIAETGSGKTMAFSLPCVESLASRPKPKFNSRDRTAHPRAVIVSPTRELAMQTHAALSGL-ASLVGLSAVCIFGGSDKNEQRNLLYKNNGVDIITATPGRLKDFL-SEGSISLANVSFAVLDEADRMLDRGFSEDI 354          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: SPB4_PICGU (ATP-dependent rRNA helicase SPB4 OS=Pichia guilliermondii GN=SPB4 PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 6.582e-20
Identity = 63/172 (36.63%), Postives = 101/172 (58.72%), Query Frame = 1
Query:  394 NLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGI--IILTPTRELALQIFSIVRDLMGGFHS-----QTSGVVMGGANRKSEADRLAKG-VNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            +L      AID+LGF SMT VQA TIP     +DV+  A TGSGKTLAF IP +E ++    +    +G+  I+++PTRELA QI ++   L+  +       +T  +V   A  + + +  A+    +I+ATPGRLLD   ++ +     ++ +V+DEADR+L++ F+ ++
Sbjct:   20 SLQPWIHDAIDSLGFRSMTPVQASTIPLFCGNKDVVVEAVTGSGKTLAFAIPVLERVTKCMKENRGSSGLYGIVISPTRELANQINTVFHTLLQFYPEDQPPIKTQLIVGSLATVREDLNAFAENKPQIIIATPGRLLDFF-SSNAVKRSTVEMVVLDEADRLLDISFQNDV 190          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: RHLB_VIBSL (ATP-dependent RNA helicase rhlB OS=Vibrio splendidus (strain LGP32) GN=rhlB PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.582e-20
Identity = 56/168 (33.33%), Postives = 101/168 (60.12%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSI-EILSTLKF--KPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            L+L  Q    ++  GF   T +QA  +P LL+G+D+ G A+TG+GKTLAFL  +   +L T +   +  N    II+ PTRELA+QI++    L+     + + +  GG +   +  ++ +G ++++ T GR++D  +  K F   +++A+V+DEADR+ ++GF +++
Sbjct:   14 LDLLPQVIEGLEKKGFDYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLKTPEHEGRKPNQPRAIIMAPTRELAIQIYNDADSLVASTGIK-AALAYGGESYDKQLGKIEEGADILIGTTGRIIDFYKQ-KVFNLNHIQAVVLDEADRMFDLGFIKDI 179          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: RHLB_TOLAT (ATP-dependent RNA helicase rhlB OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=rhlB PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.582e-20
Identity = 59/170 (34.71%), Postives = 100/170 (58.82%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEIL---STLKFKPANGTGIIILTPTRELALQIF--SIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            L L  Q  + ++A GF + T +QA TIP LL+G+++ G A+TG+GKT+AFL  +   L   S    +  N   ++I+ PTRELA+QI+  ++      GF     G+  GG     +   L +GV+L++ T GR++D+L+         ++ +V+DEADR+ ++GF +++
Sbjct:   14 LGLEPQVLAGVEAKGFHNCTPIQAETIPLLLTGKNIAGQAQTGTGKTIAFLAGTFNYLLTHSASAERRQNQPRVLIMAPTRELAVQIYNDAVPMSESCGF---KMGLAYGGDGYDKQLAVLQEGVDLLIGTTGRIIDYLKQ-GIIDLGAIQVVVLDEADRMFDLGFIKDI 179          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: RHLB_AERHH (ATP-dependent RNA helicase rhlB OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=rhlB PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.582e-20
Identity = 56/168 (33.33%), Postives = 98/168 (58.33%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILST---LKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            + L  +  + +++ GF   T +QA ++P L+ G D+ G A+TG+GKTLAFL  +   L T    K +  N    II+ PTRELA+QI++   + M        G+  GG     +   L +GV++++ T GR++D+ + +K     N++ +V+DEADR+ ++GF +++
Sbjct:   14 MGLEPEVLAGLESKGFHYCTPIQALSLPLLVEGHDLAGQAQTGTGKTLAFLAATFNYLLTHPLTKPRLINQPRAIIMAPTRELAVQIYNDA-ESMSASTGLKLGLAYGGEGYDKQLAVLEQGVDILIGTTGRIIDYFK-SKVIDLSNIQVVVLDEADRMFDLGFIKDI 179          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: PRP28_LODEL (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Lodderomyces elongisporus GN=PRP28 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.582e-20
Identity = 66/176 (37.50%), Postives = 98/176 (55.68%), Query Frame = 1
Query:  397 LSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLK------FKPANGTGIIILTPTRELALQIFSIVRDL--MGGFHSQTSGVVMGGANRKSEADRL-----AKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            L  +  +++ + GF   T VQ  +IP  L  RDV+G A TGSGKTLAFL+P +  LS +        K  N    ++L PTRELALQI           GF+  +   ++GG   +   D++      +GV+++V TPGRLLD +   K   F     LV+DEADR++++GFE+++
Sbjct:  192 LDPKILASLKSFGFRQPTPVQRASIPISLELRDVVGVAETGSGKTLAFLLPLLHYLSRVDGNYLNYEKVRNEPLALVLAPTRELALQITQEAEKFGKQLGFNVLS---IIGGRQYQETMDQIDNMIVGRGVHIVVGTPGRLLDSVER-KILNFSKCYYLVMDEADRMIDMGFEKDL 363          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DBPA_ECOLI (ATP-independent RNA helicase dbpA OS=Escherichia coli (strain K12) GN=dbpA PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 6.582e-20
Identity = 60/153 (39.22%), Postives = 90/153 (58.82%), Query Frame = 1
Query:  421 IDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEE 879
            ++ LG+ +MT VQA  +P +L+G+DV   A+TGSGKT AF +  ++ +    F+    T  ++L PTRELA Q+   +R L     +     + GG     + D L    ++IVATPGRLLDHL+   +     L  LV+DEADR+L++GF +
Sbjct:   18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQ----TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQK-GTVSLDALNTLVMDEADRMLDMGFSD 165          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DBP9_SCHPO (ATP-dependent RNA helicase dbp9 OS=Schizosaccharomyces pombe GN=dbp9 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.582e-20
Identity = 65/168 (38.69%), Postives = 92/168 (54.76%), Query Frame = 1
Query:  394 NLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGI--IILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADR--LAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            NL  + Q AI    F   T VQ+ TIP  L G+D++  ARTGSGKT A+LIP +E+L   K    N  GI  ++L PTRELA Q+++++  L   F S+    +    N      R  L    ++++ATP R + H+  +       LK LVIDEAD +L  G+ E+M
Sbjct:   20 NLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLT-AFCSKHIRFINVATNSSDTVQRPLLLDLPDIVIATPSRCVVHVA-SGVLPLDKLKFLVIDEADLMLSFGYNEDM 185          
The following BLAST results are available for this feature:
BLAST of FC917080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DDX21_MOUSE5.039e-2033.94Nucleolar RNA helicase 2 OS=Mus musculus GN=Ddx21 ... [more]
DBP8_PICST5.039e-2039.63ATP-dependent RNA helicase DBP8 OS=Pichia stipitis... [more]
DBP3_NEUCR5.039e-2039.24ATP-dependent RNA helicase dbp-3 OS=Neurospora cra... [more]
SPB4_PICGU6.582e-2036.63ATP-dependent rRNA helicase SPB4 OS=Pichia guillie... [more]
RHLB_VIBSL6.582e-2033.33ATP-dependent RNA helicase rhlB OS=Vibrio splendid... [more]
RHLB_TOLAT6.582e-2034.71ATP-dependent RNA helicase rhlB OS=Tolumonas auens... [more]
RHLB_AERHH6.582e-2033.33ATP-dependent RNA helicase rhlB OS=Aeromonas hydro... [more]
PRP28_LODEL6.582e-2037.50Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
DBPA_ECOLI6.582e-2039.22ATP-independent RNA helicase dbpA OS=Escherichia c... [more]
DBP9_SCHPO6.582e-2038.69ATP-dependent RNA helicase dbp9 OS=Schizosaccharom... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA71BH03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA71BH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917080 ID=FC917080; Name=FC917080; organism=Citrus clementina; type=EST; length=886bp
CATACCTTGACATCCCTCGTCATGACACCCGTAGCATCAACATCGGCTGT
TCAGCAAAAGAAACGCAAGAGGTCAAAGCACGGCGGGAGCACTGCCGTCG
CCTCGACCTCGACCTCGACCATAGAGGCGAGTCCGGTGAAAAAGGTCAAG
AGCAAGGGAGAGGGCAAGCAACGTCAAGCTGTTGCTGCCGAGGAGAAGGA
AGATGACGATGAGGATGCTGTCGAGGAGCAGGAAGAGTCTGCTGCCGGGC
CGTCTGGGGGACAAGCTATGGACACGACCCCAGCCTCTGCTCCTGTCTCT
GCCGAAGCTGGTCCTTCGACAACCTCGGCCGCATCGGACACACCTACTAC
CACCGCCGGAACGGCCCTGACCTCTCAAACTTTCACCTCCCTCAACCTCT
CTTCCCAAACTCAATCCGCCATCGACGCCCTCGGATTCACCTCGATGACA
GAAGTTCAAGCCCGGACCATCCCTCCTCTCCTCTCCGGACGTGACGTCCT
CGGTGCAGCCCGAACCGGATCCGGCAAGACCCTGGCTTTCCTGATCCCTT
CCATCGAAATCCTCAGTACTCTCAAGTTCAAACCGGCCAACGGGACGGGT
ATCATCATCCTCACGCCAACCAGGGAACTGGCCCTTCAGATCTTCTCCAT
CGTGAGGGATCTGATGGGTGGATTCCACAGTCAGACGTCTGGAGTAGTCA
TGGGCGGTGCGAATAGGAAATCCGAGGCGGATAGGTTGGCCAAGGGGGTC
AACCTGATCGTGGCTACTCCGGGGAGGTTGTTGGATCACTTGAGGAACAC
CAAATCCTTCGTTTTTCAGAATCTCAAAGCGCTCGTCATCGACGAGGCGG
ACCGGATCTTGGAAGTCGGGTTCGAGGAGGAAATGA
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