FC917080

Overview
NameFC917080
Unique NameFC917080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length886
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DDX10_CHICK (Probable ATP-dependent RNA helicase DDX10 OS=Gallus gallus GN=DDX10 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.251e-35
Identity = 72/163 (44.17%), Postives = 116/163 (71.17%), Query Frame = 1
Query:  397 LSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            LS +T   +    +  +TE+Q +TI   L G+DVLGAA+TGSGKTLAF++P++E+L  L++  A+G G++I++PTRELA Q F ++R  +G  H  ++G+++GG + K E++R+   +N+++ TPGRLL H+  T  F   +L+ L++DEADRIL++GF + M
Sbjct:   80 LSKKTLKGLQEAQYRMVTEIQRQTIGLALQGKDVLGAAKTGSGKTLAFIVPALELLYRLQWTSADGLGVLIISPTRELAFQTFKVLRK-VGKNHDFSAGLIIGGKDLKEESERI-HHINMLICTPGRLLQHMDETSYFYASDLQMLILDEADRILDMGFADTM 240          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DDX10_HUMAN (Probable ATP-dependent RNA helicase DDX10 OS=Homo sapiens GN=DDX10 PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 5.546e-35
Identity = 76/163 (46.63%), Postives = 114/163 (69.94%), Query Frame = 1
Query:  397 LSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            LS +T   +    +  +TE+Q +TI   L G+DVLGAA+TGSGKTLAFL+P +E L  L++   +G G++I++PTRELA Q F ++R  +G  H  ++G+++GG + K EA+R+   +N++V TPGRLL H+  T SF   +L+ LV+DEADRIL++GF + M
Sbjct:   76 LSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRK-VGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTM 236          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: RH17_ORYSJ (DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa subsp. japonica GN=Os05g0110500 PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 7.243e-35
Identity = 72/152 (47.37%), Postives = 105/152 (69.08%), Query Frame = 1
Query:  424 DALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTL--KFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGF 873
            D +GF + T +QA+ IP  +SG+ +L  A TG+GKTLA+L P + +L     + +  +GT  ++L PTREL LQ++ I + L+  FH    G +MGG NR  E  RL KG+++++ATPGRLLDHL++T SFV+ N++ +V DEAD ILE+GF
Sbjct:   40 DKMGFQAPTRIQAQAIPVAMSGQHMLVKAATGTGKTLAYLAPIVHLLQMREPRVERTDGTFALVLVPTRELCLQVYGIAQQLVHRFHWLVPGYIMGGENRAKEKARLRKGISILIATPGRLLDHLQHTSSFVYPNMRWIVFDEADSILELGF 191          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DDX10_MOUSE (Probable ATP-dependent RNA helicase DDX10 OS=Mus musculus GN=Ddx10 PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 7.243e-35
Identity = 76/163 (46.63%), Postives = 113/163 (69.33%), Query Frame = 1
Query:  397 LSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            LS +T   +    +  +TE+Q +TI   L G+DVLGAA+TGSGKTLAFL+P +E L  L++   +G G++I++PTRELA Q F ++R  +G  H  ++G+++GG + K EA+R+   +N++V TPGRLL H+  T  F   NL+ LV+DEADRIL++GF + M
Sbjct:   76 LSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRK-VGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTM 236          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DDX10_DICDI (Probable ATP-dependent RNA helicase ddx10 OS=Dictyostelium discoideum GN=ddx10 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 7.243e-35
Identity = 73/163 (44.79%), Postives = 115/163 (70.55%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEE 879
            L +S  T  A+    F  +T++Q  ++P  L GRD+LGAA+TGSGKTL+F++P +E L   ++   +G G I+L+PTRELA+QIF +++  +G +H+ ++G+++GG N + E D++   +N+++ATPGRLL H+  T  F   NLK LV+DEADRIL++GF +
Sbjct:  146 LPISQLTLKALTESKFLKLTDIQRASLPHTLCGRDILGAAKTGSGKTLSFILPILETLWRNRWGRDDGIGAIVLSPTRELAIQIFDVLK-AVGKYHTFSAGLIIGGRNVQQEKDKI-NAMNILIATPGRLLQHMDETYGFDCSNLKILVLDEADRILDLGFSK 306          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: RH17_ARATH (DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana GN=RH17 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 9.460e-35
Identity = 78/169 (46.15%), Postives = 114/169 (67.46%), Query Frame = 1
Query:  388 SLNLSSQTQSAI-DALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILS--TLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            SL L ++    + + +GF + T VQA+ IP +LSGRDVL  A TG+GKT+A+L P I  L   + K   ++GT  +++ PTREL LQ++  +  L+  FH    G VMGG  +  E  RL KG+++++ATPGRLLDHL+NT SFV +NL+ ++ DEAD ILE+G+ +E+
Sbjct:   33 SLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRKGISILIATPGRLLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEI 201          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DBP4_SCHPO (ATP-dependent RNA helicase dbp4 OS=Schizosaccharomyces pombe GN=dbp4 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 9.460e-35
Identity = 75/161 (46.58%), Postives = 113/161 (70.19%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGF 873
            L L+  T+SA+    F ++TE+Q + IP  L GRD+LGAA+TGSGKTLAF++P IE L   K+   +G G ++++PTRELA+Q F  +  + G  HS ++G+++GG N K E +RL++ +N++V TPGRLL H+    +F    L+ L++DEADRIL++GF
Sbjct:   44 LPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVKI-GRLHSFSAGLIIGGNNYKEEKERLSR-MNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGF 202          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DDX31_DICDI (Probable ATP-dependent RNA helicase ddx31 OS=Dictyostelium discoideum GN=ddx31 PE=3 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.614e-34
Identity = 68/146 (46.58%), Postives = 107/146 (73.29%), Query Frame = 1
Query:  448 TEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            T +Q  +I P+L G D L  A+TGSGKTL++LIP ++ L+  +   ++G   +I+TPTREL+ QI+  ++ L+  F+    G++MGG NR +E  R+ KG+N++VATPGRLLDHL+NT+SF   N+K  ++DEAD++L++GFE+++
Sbjct:  232 THIQEASITPILKGNDALVKAQTGSGKTLSYLIPVVQKLTEQRVTRSDGCYCVIITPTRELSSQIYEELQKLLKPFYWIVPGIIMGGENRSAEKARIRKGINILVATPGRLLDHLQNTQSFPTDNIKWCILDEADKLLDLGFEKDV 377          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DRS1_CANAL (ATP-dependent RNA helicase DRS1 OS=Candida albicans GN=DRS1 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.595e-34
Identity = 74/166 (44.58%), Postives = 112/166 (67.47%), Query Frame = 1
Query:  388 SLNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            +L LS      I  L FT  T +Q+ +IP  L G+D++  A+TGSGKT A++IP IE    L +KP+  T +IILTPTRELALQ++   + L    ++   G+ +GG N + + ++L    ++++ATPGRL+DH+RN+ SF  Q+++ LVIDEADR+LE GF++E+
Sbjct:  134 TLQLSRPVLKGIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIE---RLLYKPSTSTKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTRPDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDEL 296          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DBP4_PHANO (ATP-dependent RNA helicase DBP4 OS=Phaeosphaeria nodorum GN=DBP4 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.595e-34
Identity = 76/166 (45.78%), Postives = 115/166 (69.28%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPAN-GTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            L LS  T+  + A  F  MT++Q + +P  L G D+LGAA+TGSGKTL+F+IP +E L  L+   A+ G G +IL+PTRELA+QIF ++  +    H   +G+++GG + +SE   L + +N++VATPGR+L HL  T +F+  +LK LV+DEADRIL++GF+ ++
Sbjct:   54 LPLSDPTKQGLKACHFAVMTDIQRKAVPLALKGHDILGAAKTGSGKTLSFIIPVLENLYRLQHVGADAGLGALILSPTRELAIQIFDVLCKIGKHGHMFAAGLLIGGKSLESERQALPR-MNILVATPGRMLQHLSQTAAFLVDDLKMLVLDEADRILDMGFQRDV 218          
The following BLAST results are available for this feature:
BLAST of FC917080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DDX10_CHICK3.251e-3544.17Probable ATP-dependent RNA helicase DDX10 OS=Gallu... [more]
DDX10_HUMAN5.546e-3546.63Probable ATP-dependent RNA helicase DDX10 OS=Homo ... [more]
RH17_ORYSJ7.243e-3547.37DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sa... [more]
DDX10_MOUSE7.243e-3546.63Probable ATP-dependent RNA helicase DDX10 OS=Mus m... [more]
DDX10_DICDI7.243e-3544.79Probable ATP-dependent RNA helicase ddx10 OS=Dicty... [more]
RH17_ARATH9.460e-3546.15DEAD-box ATP-dependent RNA helicase 17 OS=Arabidop... [more]
DBP4_SCHPO9.460e-3546.58ATP-dependent RNA helicase dbp4 OS=Schizosaccharom... [more]
DDX31_DICDI1.614e-3446.58Probable ATP-dependent RNA helicase ddx31 OS=Dicty... [more]
DRS1_CANAL3.595e-3444.58ATP-dependent RNA helicase DRS1 OS=Candida albican... [more]
DBP4_PHANO3.595e-3445.78ATP-dependent RNA helicase DBP4 OS=Phaeosphaeria n... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA71BH03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA71BH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917080 ID=FC917080; Name=FC917080; organism=Citrus clementina; type=EST; length=886bp
CATACCTTGACATCCCTCGTCATGACACCCGTAGCATCAACATCGGCTGT
TCAGCAAAAGAAACGCAAGAGGTCAAAGCACGGCGGGAGCACTGCCGTCG
CCTCGACCTCGACCTCGACCATAGAGGCGAGTCCGGTGAAAAAGGTCAAG
AGCAAGGGAGAGGGCAAGCAACGTCAAGCTGTTGCTGCCGAGGAGAAGGA
AGATGACGATGAGGATGCTGTCGAGGAGCAGGAAGAGTCTGCTGCCGGGC
CGTCTGGGGGACAAGCTATGGACACGACCCCAGCCTCTGCTCCTGTCTCT
GCCGAAGCTGGTCCTTCGACAACCTCGGCCGCATCGGACACACCTACTAC
CACCGCCGGAACGGCCCTGACCTCTCAAACTTTCACCTCCCTCAACCTCT
CTTCCCAAACTCAATCCGCCATCGACGCCCTCGGATTCACCTCGATGACA
GAAGTTCAAGCCCGGACCATCCCTCCTCTCCTCTCCGGACGTGACGTCCT
CGGTGCAGCCCGAACCGGATCCGGCAAGACCCTGGCTTTCCTGATCCCTT
CCATCGAAATCCTCAGTACTCTCAAGTTCAAACCGGCCAACGGGACGGGT
ATCATCATCCTCACGCCAACCAGGGAACTGGCCCTTCAGATCTTCTCCAT
CGTGAGGGATCTGATGGGTGGATTCCACAGTCAGACGTCTGGAGTAGTCA
TGGGCGGTGCGAATAGGAAATCCGAGGCGGATAGGTTGGCCAAGGGGGTC
AACCTGATCGTGGCTACTCCGGGGAGGTTGTTGGATCACTTGAGGAACAC
CAAATCCTTCGTTTTTCAGAATCTCAAAGCGCTCGTCATCGACGAGGCGG
ACCGGATCTTGGAAGTCGGGTTCGAGGAGGAAATGA
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