FC917080
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DDX10_CHICK (Probable ATP-dependent RNA helicase DDX10 OS=Gallus gallus GN=DDX10 PE=2 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 3.251e-35 Identity = 72/163 (44.17%), Postives = 116/163 (71.17%), Query Frame = 1 Query: 397 LSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885 LS +T + + +TE+Q +TI L G+DVLGAA+TGSGKTLAF++P++E+L L++ A+G G++I++PTRELA Q F ++R +G H ++G+++GG + K E++R+ +N+++ TPGRLL H+ T F +L+ L++DEADRIL++GF + M Sbjct: 80 LSKKTLKGLQEAQYRMVTEIQRQTIGLALQGKDVLGAAKTGSGKTLAFIVPALELLYRLQWTSADGLGVLIISPTRELAFQTFKVLRK-VGKNHDFSAGLIIGGKDLKEESERI-HHINMLICTPGRLLQHMDETSYFYASDLQMLILDEADRILDMGFADTM 240
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DDX10_HUMAN (Probable ATP-dependent RNA helicase DDX10 OS=Homo sapiens GN=DDX10 PE=1 SV=2) HSP 1 Score: 148.288 bits (373), Expect = 5.546e-35 Identity = 76/163 (46.63%), Postives = 114/163 (69.94%), Query Frame = 1 Query: 397 LSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885 LS +T + + +TE+Q +TI L G+DVLGAA+TGSGKTLAFL+P +E L L++ +G G++I++PTRELA Q F ++R +G H ++G+++GG + K EA+R+ +N++V TPGRLL H+ T SF +L+ LV+DEADRIL++GF + M Sbjct: 76 LSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRK-VGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTM 236
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: RH17_ORYSJ (DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa subsp. japonica GN=Os05g0110500 PE=2 SV=2) HSP 1 Score: 147.902 bits (372), Expect = 7.243e-35 Identity = 72/152 (47.37%), Postives = 105/152 (69.08%), Query Frame = 1 Query: 424 DALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTL--KFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGF 873 D +GF + T +QA+ IP +SG+ +L A TG+GKTLA+L P + +L + + +GT ++L PTREL LQ++ I + L+ FH G +MGG NR E RL KG+++++ATPGRLLDHL++T SFV+ N++ +V DEAD ILE+GF Sbjct: 40 DKMGFQAPTRIQAQAIPVAMSGQHMLVKAATGTGKTLAYLAPIVHLLQMREPRVERTDGTFALVLVPTRELCLQVYGIAQQLVHRFHWLVPGYIMGGENRAKEKARLRKGISILIATPGRLLDHLQHTSSFVYPNMRWIVFDEADSILELGF 191
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DDX10_MOUSE (Probable ATP-dependent RNA helicase DDX10 OS=Mus musculus GN=Ddx10 PE=1 SV=2) HSP 1 Score: 147.902 bits (372), Expect = 7.243e-35 Identity = 76/163 (46.63%), Postives = 113/163 (69.33%), Query Frame = 1 Query: 397 LSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885 LS +T + + +TE+Q +TI L G+DVLGAA+TGSGKTLAFL+P +E L L++ +G G++I++PTRELA Q F ++R +G H ++G+++GG + K EA+R+ +N++V TPGRLL H+ T F NL+ LV+DEADRIL++GF + M Sbjct: 76 LSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRK-VGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTM 236
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DDX10_DICDI (Probable ATP-dependent RNA helicase ddx10 OS=Dictyostelium discoideum GN=ddx10 PE=3 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 7.243e-35 Identity = 73/163 (44.79%), Postives = 115/163 (70.55%), Query Frame = 1 Query: 391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEE 879 L +S T A+ F +T++Q ++P L GRD+LGAA+TGSGKTL+F++P +E L ++ +G G I+L+PTRELA+QIF +++ +G +H+ ++G+++GG N + E D++ +N+++ATPGRLL H+ T F NLK LV+DEADRIL++GF + Sbjct: 146 LPISQLTLKALTESKFLKLTDIQRASLPHTLCGRDILGAAKTGSGKTLSFILPILETLWRNRWGRDDGIGAIVLSPTRELAIQIFDVLK-AVGKYHTFSAGLIIGGRNVQQEKDKI-NAMNILIATPGRLLQHMDETYGFDCSNLKILVLDEADRILDLGFSK 306
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: RH17_ARATH (DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana GN=RH17 PE=2 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 9.460e-35 Identity = 78/169 (46.15%), Postives = 114/169 (67.46%), Query Frame = 1 Query: 388 SLNLSSQTQSAI-DALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILS--TLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885 SL L ++ + + +GF + T VQA+ IP +LSGRDVL A TG+GKT+A+L P I L + K ++GT +++ PTREL LQ++ + L+ FH G VMGG + E RL KG+++++ATPGRLLDHL+NT SFV +NL+ ++ DEAD ILE+G+ +E+ Sbjct: 33 SLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRKGISILIATPGRLLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEI 201
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DBP4_SCHPO (ATP-dependent RNA helicase dbp4 OS=Schizosaccharomyces pombe GN=dbp4 PE=1 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 9.460e-35 Identity = 75/161 (46.58%), Postives = 113/161 (70.19%), Query Frame = 1 Query: 391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGF 873 L L+ T+SA+ F ++TE+Q + IP L GRD+LGAA+TGSGKTLAF++P IE L K+ +G G ++++PTRELA+Q F + + G HS ++G+++GG N K E +RL++ +N++V TPGRLL H+ +F L+ L++DEADRIL++GF Sbjct: 44 LPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVKI-GRLHSFSAGLIIGGNNYKEEKERLSR-MNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGF 202
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DDX31_DICDI (Probable ATP-dependent RNA helicase ddx31 OS=Dictyostelium discoideum GN=ddx31 PE=3 SV=2) HSP 1 Score: 146.747 bits (369), Expect = 1.614e-34 Identity = 68/146 (46.58%), Postives = 107/146 (73.29%), Query Frame = 1 Query: 448 TEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885 T +Q +I P+L G D L A+TGSGKTL++LIP ++ L+ + ++G +I+TPTREL+ QI+ ++ L+ F+ G++MGG NR +E R+ KG+N++VATPGRLLDHL+NT+SF N+K ++DEAD++L++GFE+++ Sbjct: 232 THIQEASITPILKGNDALVKAQTGSGKTLSYLIPVVQKLTEQRVTRSDGCYCVIITPTRELSSQIYEELQKLLKPFYWIVPGIIMGGENRSAEKARIRKGINILVATPGRLLDHLQNTQSFPTDNIKWCILDEADKLLDLGFEKDV 377
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DRS1_CANAL (ATP-dependent RNA helicase DRS1 OS=Candida albicans GN=DRS1 PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 3.595e-34 Identity = 74/166 (44.58%), Postives = 112/166 (67.47%), Query Frame = 1 Query: 388 SLNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885 +L LS I L FT T +Q+ +IP L G+D++ A+TGSGKT A++IP IE L +KP+ T +IILTPTRELALQ++ + L ++ G+ +GG N + + ++L ++++ATPGRL+DH+RN+ SF Q+++ LVIDEADR+LE GF++E+ Sbjct: 134 TLQLSRPVLKGIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIE---RLLYKPSTSTKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTRPDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDEL 296
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DBP4_PHANO (ATP-dependent RNA helicase DBP4 OS=Phaeosphaeria nodorum GN=DBP4 PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 3.595e-34 Identity = 76/166 (45.78%), Postives = 115/166 (69.28%), Query Frame = 1 Query: 391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPAN-GTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885 L LS T+ + A F MT++Q + +P L G D+LGAA+TGSGKTL+F+IP +E L L+ A+ G G +IL+PTRELA+QIF ++ + H +G+++GG + +SE L + +N++VATPGR+L HL T +F+ +LK LV+DEADRIL++GF+ ++ Sbjct: 54 LPLSDPTKQGLKACHFAVMTDIQRKAVPLALKGHDILGAAKTGSGKTLSFIIPVLENLYRLQHVGADAGLGALILSPTRELAIQIFDVLCKIGKHGHMFAAGLLIGGKSLESERQALPR-MNILVATPGRMLQHLSQTAAFLVDDLKMLVLDEADRILDMGFQRDV 218 The following BLAST results are available for this feature:
BLAST of FC917080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC917080 ID=FC917080; Name=FC917080; organism=Citrus clementina; type=EST; length=886bpback to top |