FC917080

Overview
NameFC917080
Unique NameFC917080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length886
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DBP4_MAGGR (ATP-dependent RNA helicase DBP4 OS=Magnaporthe grisea GN=DBP4 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.695e-34
Identity = 74/165 (44.85%), Postives = 114/165 (69.09%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            L LS  T   +    F ++T++QAR IP  L GRD+LGAA+TGSGKTLAFL+P +E L   ++      G ++L+PTRELA+Q F ++R + G  H  ++G+V+GG + + EA+ L++ +N+++ TPGR+L HL  T  F   NL+ LV+DEADRI+++GF+ ++
Sbjct:   54 LPLSEPTAKGVRDSHFETLTDIQARAIPLALKGRDILGAAKTGSGKTLAFLVPLLEKLYREQWTQEAKLGALVLSPTRELAVQTFQVLRKI-GRHHLFSAGLVIGGKSVREEAEALSR-MNILIGTPGRILQHLDQTHGFDVDNLQLLVLDEADRIMDLGFQRDV 216          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DRS1_LODEL (ATP-dependent RNA helicase DRS1 OS=Lodderomyces elongisporus GN=DRS1 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.784e-33
Identity = 77/165 (46.67%), Postives = 110/165 (66.67%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            L LS     ++  LGFT  T VQA TIP  L G+D++ +A+TGSGKT A+LIP IE L  L  K +  T  IILTPTRELA+Q+  + R L     +   G+ +GG + K +  +L    ++++ATPGRL+DH+RN+ SF  ++++ L+IDEADR+LE GF+EE+
Sbjct:  201 LQLSRPILKSLQQLGFTVPTPVQASTIPIALLGKDIVASAQTGSGKTAAYLIPIIERL--LYVKNSTSTKAIILTPTRELAIQVHDVGRKLGQFVSNLNFGMAVGGLSLKQQEQQLKTRPDIVIATPGRLIDHIRNSPSFSVEDVQVLIIDEADRMLEEGFQEEL 363          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DRS1_KLULA (ATP-dependent RNA helicase DRS1 OS=Kluyveromyces lactis GN=DRS1 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 8.854e-33
Identity = 73/168 (43.45%), Postives = 112/168 (66.67%), Query Frame = 1
Query:  388 SLNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPAN--GTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            SL+LS      + +LG+TS + +Q+  IP  L G+D++  A TGSGKT AF+IP IE    L +KPA+   T +++LTPTRELA+Q+  + +++    +  T G+ +GG N + +   L    ++++ATPGR +DHLRN+ SF   +++ LVIDEADR+LE GF+EE+
Sbjct:  237 SLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIE---RLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEEL 401          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DRS1_ASHGO (ATP-dependent RNA helicase DRS1 OS=Ashbya gossypii GN=DRS1 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.365e-32
Identity = 74/168 (44.05%), Postives = 109/168 (64.88%), Query Frame = 1
Query:  388 SLNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPAN--GTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            SL+LS      + ALG+T  + +Q  TIP  L G+DV+  A TGSGKT AF+IP IE    L +KPA    T +++LTPTRELA+Q+  + + L       T G+ +GG N + +   L    ++++ATPGR++DH+RN+ SF   +++ LVIDEADR+LE GF++E+
Sbjct:  223 SLSLSRPVLKGLAALGYTKPSPIQGATIPIALLGKDVIAGAVTGSGKTAAFMIPIIE---RLLYKPAKIASTRVLVLTPTRELAIQVADVGKKLGKFVSGLTFGLAVGGLNLRQQEQALKLRPDIVIATPGRIIDHIRNSASFSVDSVEVLVIDEADRMLEDGFQDEL 387          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DBP4_DEBHA (ATP-dependent RNA helicase DBP4 OS=Debaryomyces hansenii GN=DBP4 PE=3 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 3.365e-32
Identity = 72/165 (43.64%), Postives = 112/165 (67.88%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            L +S +T   +    F S+T++Q +TIP  L G DV+G A+TGSGKTLAFLIP+IE L   K    +G   +I++PTRELA+QIF ++  + G  ++ ++G+V GG + K E +R++K +N++V TPGR+  HL  +      NL+ LV+DEADR L++GF++++
Sbjct:   51 LPISEETARGLKEASFASLTDIQKKTIPISLKGEDVMGTAKTGSGKTLAFLIPTIESLIRNKITEYDGLAALIISPTRELAVQIFEVLVKI-GKHNNFSAGLVTGGKDVKYEKERVSK-MNILVGTPGRISQHLNESVGMETSNLQVLVLDEADRCLDMGFKKQI 213          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: Y8611_DROME (Probable ATP-dependent RNA helicase CG8611 OS=Drosophila melanogaster GN=CG8611 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.394e-32
Identity = 66/156 (42.31%), Postives = 106/156 (67.95%), Query Frame = 1
Query:  424 DALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTL--KFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            D L    +T VQ +TIP +L G+DVL  ++TGSGKTLA+ +P +E+L     + +  +G   +++ PTREL +Q + +++ L+  +     G ++GG +RKSE  RL KG+N+++ TPGRL+DHL +T SF    L+ L++DEADR+LE+G+E ++
Sbjct:  344 DLLSIRELTSVQQKTIPEVLQGKDVLVRSQTGSGKTLAYALPLVELLQKQQPRIQRKDGVLALVIVPTRELVMQTYELIQKLVKPYTWIVPGSLLGGESRKSEKARLRKGINILIGTPGRLVDHLLHTASFKLTKLQFLILDEADRLLELGYERDV 499          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DRS1_VANPO (ATP-dependent RNA helicase DRS1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DRS1 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.394e-32
Identity = 74/168 (44.05%), Postives = 108/168 (64.29%), Query Frame = 1
Query:  388 SLNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPAN--GTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            SL LS      +  LG+T  + +Q+ TIP  LSG+D++  A TGSGKT AF+IP IE    L +KPA    T +I+LTPTRELA+QI  + + +       T G+ +GG N + +   L    ++++ATPGR +DH+RN+ SF   +++ LV+DEADR+LE GF+EE+
Sbjct:  235 SLTLSRPVLKGLSDLGYTKPSPIQSATIPIGLSGKDIIAGAVTGSGKTAAFMIPIIE---RLLYKPAKVASTRVIVLTPTRELAIQIADVGKKIGKYVSGLTFGLAVGGLNLRQQEQELKTRPDIVIATPGRFIDHVRNSSSFNVDSVEVLVMDEADRMLEEGFQEEL 399          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DBP4_KLULA (ATP-dependent RNA helicase DBP4 OS=Kluyveromyces lactis GN=DBP4 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.394e-32
Identity = 72/165 (43.64%), Postives = 110/165 (66.67%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            L +S QT   +    F  +TE+Q  +IP  L G DVLGAA+TGSGKTLAFLIP IE L   K+   +G G +I++PTRELA+QI+ ++  + G   + ++G+V+GG +   E +R+++ +N+++ TPGR+L H+     F   NL+ LV+DEADR L++GF+  +
Sbjct:   46 LPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLSKI-GKHTTFSAGLVIGGKDVTFEKERISR-INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTL 208          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DBP4_ASHGO (ATP-dependent RNA helicase DBP4 OS=Ashbya gossypii GN=DBP4 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.789e-32
Identity = 70/165 (42.42%), Postives = 112/165 (67.88%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            L +SS T   +    +  MT++Q   IP  L G DVLGAA+TGSGKTLAFL+P +E L   ++   +G G ++++PTRELA+QI+ ++  + G + S ++G+V+GG + K E +R++K +N+++ TPGRLL H+  +      NL+ LV+DEADR L++GF++ +
Sbjct:   46 LPISSGTVKGLKEAAYIKMTDIQRAAIPVALKGHDVLGAAKTGSGKTLAFLVPVLEKLYHERWTELDGLGALVISPTRELAMQIYEVLVKI-GKYMSFSAGLVIGGKDVKFEMERVSK-INILIGTPGRLLQHMDQSVGLNTSNLQILVLDEADRCLDMGFKKAL 208          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DBP4_YEAST (ATP-dependent RNA helicase DBP4 OS=Saccharomyces cerevisiae GN=DBP4 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 1.279e-31
Identity = 72/165 (43.64%), Postives = 110/165 (66.67%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            L +S  T   +    F  +TE+QA +IP  L G DVL AA+TGSGKTLAFL+P IE L   K+   +G G +I++PTRELA+QI+ ++  + G   S ++G+V+GG + K E +R+++ +N+++ TPGR+L HL         NL+ LV+DEADR L++GF++ +
Sbjct:   46 LPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEKLYREKWTEFDGLGALIISPTRELAMQIYEVLTKI-GSHTSFSAGLVIGGKDVKFELERISR-INILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTL 208          
The following BLAST results are available for this feature:
BLAST of FC917080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP4_MAGGR4.695e-3444.85ATP-dependent RNA helicase DBP4 OS=Magnaporthe gri... [more]
DRS1_LODEL1.784e-3346.67ATP-dependent RNA helicase DRS1 OS=Lodderomyces el... [more]
DRS1_KLULA8.854e-3343.45ATP-dependent RNA helicase DRS1 OS=Kluyveromyces l... [more]
DRS1_ASHGO3.365e-3244.05ATP-dependent RNA helicase DRS1 OS=Ashbya gossypii... [more]
DBP4_DEBHA3.365e-3243.64ATP-dependent RNA helicase DBP4 OS=Debaryomyces ha... [more]
Y8611_DROME4.394e-3242.31Probable ATP-dependent RNA helicase CG8611 OS=Dros... [more]
DRS1_VANPO4.394e-3244.05ATP-dependent RNA helicase DRS1 OS=Vanderwaltozyma... [more]
DBP4_KLULA4.394e-3243.64ATP-dependent RNA helicase DBP4 OS=Kluyveromyces l... [more]
DBP4_ASHGO9.789e-3242.42ATP-dependent RNA helicase DBP4 OS=Ashbya gossypii... [more]
DBP4_YEAST1.279e-3143.64ATP-dependent RNA helicase DBP4 OS=Saccharomyces c... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA71BH03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA71BH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917080 ID=FC917080; Name=FC917080; organism=Citrus clementina; type=EST; length=886bp
CATACCTTGACATCCCTCGTCATGACACCCGTAGCATCAACATCGGCTGT
TCAGCAAAAGAAACGCAAGAGGTCAAAGCACGGCGGGAGCACTGCCGTCG
CCTCGACCTCGACCTCGACCATAGAGGCGAGTCCGGTGAAAAAGGTCAAG
AGCAAGGGAGAGGGCAAGCAACGTCAAGCTGTTGCTGCCGAGGAGAAGGA
AGATGACGATGAGGATGCTGTCGAGGAGCAGGAAGAGTCTGCTGCCGGGC
CGTCTGGGGGACAAGCTATGGACACGACCCCAGCCTCTGCTCCTGTCTCT
GCCGAAGCTGGTCCTTCGACAACCTCGGCCGCATCGGACACACCTACTAC
CACCGCCGGAACGGCCCTGACCTCTCAAACTTTCACCTCCCTCAACCTCT
CTTCCCAAACTCAATCCGCCATCGACGCCCTCGGATTCACCTCGATGACA
GAAGTTCAAGCCCGGACCATCCCTCCTCTCCTCTCCGGACGTGACGTCCT
CGGTGCAGCCCGAACCGGATCCGGCAAGACCCTGGCTTTCCTGATCCCTT
CCATCGAAATCCTCAGTACTCTCAAGTTCAAACCGGCCAACGGGACGGGT
ATCATCATCCTCACGCCAACCAGGGAACTGGCCCTTCAGATCTTCTCCAT
CGTGAGGGATCTGATGGGTGGATTCCACAGTCAGACGTCTGGAGTAGTCA
TGGGCGGTGCGAATAGGAAATCCGAGGCGGATAGGTTGGCCAAGGGGGTC
AACCTGATCGTGGCTACTCCGGGGAGGTTGTTGGATCACTTGAGGAACAC
CAAATCCTTCGTTTTTCAGAATCTCAAAGCGCTCGTCATCGACGAGGCGG
ACCGGATCTTGGAAGTCGGGTTCGAGGAGGAAATGA
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