FC917080

Overview
NameFC917080
Unique NameFC917080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length886
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DBP4_YEAS7 (ATP-dependent RNA helicase DBP4 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP4 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.279e-31
Identity = 72/165 (43.64%), Postives = 110/165 (66.67%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            L +S  T   +    F  +TE+QA +IP  L G DVL AA+TGSGKTLAFL+P IE L   K+   +G G +I++PTRELA+QI+ ++  + G   S ++G+V+GG + K E +R+++ +N+++ TPGR+L HL         NL+ LV+DEADR L++GF++ +
Sbjct:   46 LPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEKLYREKWTEFDGLGALIISPTRELAMQIYEVLTKI-GSHTSFSAGLVIGGKDVKFELERISR-INILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTL 208          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: RH32_ARATH (DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana GN=RH32 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.670e-31
Identity = 69/165 (41.82%), Postives = 106/165 (64.24%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            L +S +T+  +    +  MT+VQ+  IP  L GRD+LGAARTGSGKTLAF+IP +E L   ++ P +G G II++PTRELA Q F ++ + +G FH  ++G+++GG             +N++V  PGRLL H+  T +F    L+ L++DEADR+L+  F+ ++
Sbjct:   76 LPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVL-NKVGKFHKFSAGLLIGGREGVDVEKERVHEMNILVCAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQL 239          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DRS1_PICGU (ATP-dependent RNA helicase DRS1 OS=Pichia guilliermondii GN=DRS1 PE=3 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.670e-31
Identity = 73/168 (43.45%), Postives = 110/168 (65.48%), Query Frame = 1
Query:  388 SLNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPA--NGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            +L LS      +  LG+T  + +QA +IP  + G+D++  A TGSGKT A+LIP IE    L +KPA  + T +I+LTPTRELA+Q+  + + L     +   G+ +GG N + +  +L    +++VATPGRL+DH+RN+ SF  +NL+ LV+DEADR+LE GF+ E+
Sbjct:  202 ALQLSRPLLKGVGNLGYTVPSAIQAASIPIAMMGKDIVAGAVTGSGKTAAYLIPIIE---RLIYKPAAVSATRVIVLTPTRELAIQVCDVGKKLGQFVANLNFGLAVGGLNLRQQEQQLKSRPDIVVATPGRLIDHIRNSPSFSIENLEVLVMDEADRMLEEGFQVEL 366          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DBP7_PICGU (ATP-dependent RNA helicase DBP7 OS=Pichia guilliermondii GN=DBP7 PE=3 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 2.848e-31
Identity = 72/156 (46.15%), Postives = 101/156 (64.74%), Query Frame = 1
Query:  424 DALGFTSMTEVQARTIPPLLS-GRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPA---NGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEE 879
            ++L F + T++Q   IP LLS  RD+   A+TGSGKTL+FL+P +  L   K  P    +G   I+L PTRELA QI+ ++  L    H    G+V+GG  +KSE  R+ KGVN++VATPGRL DH+ NT S     L+ L++DE DR++++GFEE
Sbjct:  152 ESLRFKNPTQIQKSVIPSLLSTSRDLFVKAQTGSGKTLSFLLPILHKLMQEKKNPITRESGVFAIVLVPTRELANQIYGVLETLTRCHHQIVPGIVIGGEKKKSEKARIRKGVNILVATPGRLADHIENTTSLDLSQLRYLILDEGDRLIDLGFEE 307          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DBP4_LODEL (ATP-dependent RNA helicase DBP4 OS=Lodderomyces elongisporus GN=DBP4 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.858e-31
Identity = 69/165 (41.82%), Postives = 110/165 (66.67%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            L ++  T   +    F S+T++Q ++IP  L G D++G ARTGSGKTLAFLIP IEIL        +G   +I++PTRELA+QIF ++  + G ++S ++G+V GG + + E +R+++ +N++V TPGR+  HL  +      NL+ LV+DEADR L++GF +++
Sbjct:   53 LPITQNTLRGLKECSFVSLTDIQKKSIPVALKGEDLMGTARTGSGKTLAFLIPVIEILLRNDITEYDGLAALIVSPTRELAVQIFEVLAKI-GKYNSFSAGLVTGGKDVQYEKERISR-MNILVGTPGRISQHLNESVGMETSNLQVLVLDEADRCLDMGFRKQI 215          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DRS1_YARLI (ATP-dependent RNA helicase DRS1 OS=Yarrowia lipolytica GN=DRS1 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.345e-31
Identity = 70/166 (42.17%), Postives = 106/166 (63.86%), Query Frame = 1
Query:  388 SLNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            +LNLS      I ALG+ + T +Q+RTIP  L G+D++  A TGSGKT A++IP +E L     K A  T +++LTPTREL++Q+  + + L         G+ +GG N + +   L     +++ATPGR +DH+RN+ SF   +++ LVIDEADR+LE GF++E+
Sbjct:  256 TLNLSRPVMKGISALGYQAPTPIQSRTIPIALMGKDLVAGAVTGSGKTAAYIIPVLERLLYKSSKVA-ATKVVVLTPTRELSIQVADVGKKLAQYVSGVRFGLAVGGLNLRVQEQELKTRPEVVIATPGRFIDHVRNSPSFNVDDVEILVIDEADRMLEEGFQQEL 420          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DBP4_CANAL (ATP-dependent RNA helicase DBP4 OS=Candida albicans GN=DBP4 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.287e-31
Identity = 69/165 (41.82%), Postives = 110/165 (66.67%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            L ++  T   +    F S+T++Q +TIP  L G D++G ARTGSGKTLAFLIP IE L   K    +G   +I++PTRELA+QIF ++  + G +++ ++G+V GG + + E +R+++ +N++V TPGR+  HL         NL+ LV+DEADR L++GF++++
Sbjct:   53 LPITENTLKGLKEATFVSLTDIQKKTIPIALKGEDLMGTARTGSGKTLAFLIPVIESLIRNKITEYDGLAALIVSPTRELAVQIFEVLTKI-GKYNTFSAGLVTGGKDVQFEKERVSR-MNILVGTPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFKKQI 215          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DBP7_DEBHA (ATP-dependent RNA helicase DBP7 OS=Debaryomyces hansenii GN=DBP7 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.082e-30
Identity = 73/156 (46.79%), Postives = 104/156 (66.67%), Query Frame = 1
Query:  424 DALGFTSMTEVQARTIPPLLSG-RDVLGAARTGSGKTLAFLIPSI-EILSTLKFKPANGTGI--IILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEE 879
            ++L F + T+VQ   IP L++  RD+   A+TGSGKTL+FL+P   +++S  K+K    +G+  IIL PTREL  QI+ ++  L+   H    G+V+GG  +KSE  RL KGVN++VATPGRL DH+ NT S     L+ L++DE DR+ E+GFEE
Sbjct:  178 ESLRFKAPTKVQRSVIPSLIATQRDLFVKAQTGSGKTLSFLLPIFHKLMSEEKYKITRESGLFAIILVPTRELCTQIYGVLETLVRCHHHIVPGIVIGGEKKKSEKARLRKGVNILVATPGRLADHMENTTSLDVSQLRWLILDEGDRLTELGFEE 333          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: RRP3_ASPOR (ATP-dependent rRNA helicase rrp3 OS=Aspergillus oryzae GN=rrp3 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.414e-30
Identity = 79/161 (49.07%), Postives = 103/161 (63.98%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGF 873
            L L  Q   A D++G+ + T +QA  IP  L GRD++G A TGSGKT AF +P   IL  L  KP++  G++ L PTRELA QI      L G   S  S V++GG +  S++  L K  ++IVATPGRLLDHL NTK F  +NLK LV+DEADR+L++ F
Sbjct:   57 LGLIEQLCEACDSMGYKAPTAIQAEAIPLALQGRDLIGLAETGSGKTAAFALP---ILQALMDKPSSFFGLV-LAPTRELAYQISQAFEGL-GSTISVRSTVLVGGMDMVSQSIALGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDF 212          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DBP4_VANPO (ATP-dependent RNA helicase DBP4 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DBP4 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.414e-30
Identity = 69/165 (41.82%), Postives = 112/165 (67.88%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            L +S+ T   ++   F  +T++Q  +IP  L G D+LGAA+TGSGKTLAFLIP +E L   ++   +G G +I++PTRELA+QI+ ++  + G   S ++G+V+GG + K E +R++K +N+++ TPGR+L H+         NL+ LV+DEADR L++GF++ +
Sbjct:   46 LPISNSTLKGLNDSAFLKLTDIQRDSIPMSLKGYDILGAAKTGSGKTLAFLIPVLEKLYRERWTEFDGLGALIISPTRELAMQIYEVLLKI-GTSTSFSAGLVIGGKDVKFEMERISK-INILIGTPGRILQHMDQAIGLNTSNLQMLVLDEADRCLDMGFKKTL 208          
The following BLAST results are available for this feature:
BLAST of FC917080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP4_YEAS71.279e-3143.64ATP-dependent RNA helicase DBP4 OS=Saccharomyces c... [more]
RH32_ARATH1.670e-3141.82DEAD-box ATP-dependent RNA helicase 32 OS=Arabidop... [more]
DRS1_PICGU1.670e-3143.45ATP-dependent RNA helicase DRS1 OS=Pichia guillier... [more]
DBP7_PICGU2.848e-3146.15ATP-dependent RNA helicase DBP7 OS=Pichia guillier... [more]
DBP4_LODEL4.858e-3141.82ATP-dependent RNA helicase DBP4 OS=Lodderomyces el... [more]
DRS1_YARLI6.345e-3142.17ATP-dependent RNA helicase DRS1 OS=Yarrowia lipoly... [more]
DBP4_CANAL8.287e-3141.82ATP-dependent RNA helicase DBP4 OS=Candida albican... [more]
DBP7_DEBHA1.082e-3046.79ATP-dependent RNA helicase DBP7 OS=Debaryomyces ha... [more]
RRP3_ASPOR1.414e-3049.07ATP-dependent rRNA helicase rrp3 OS=Aspergillus or... [more]
DBP4_VANPO1.414e-3041.82ATP-dependent RNA helicase DBP4 OS=Vanderwaltozyma... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA71BH03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA71BH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917080 ID=FC917080; Name=FC917080; organism=Citrus clementina; type=EST; length=886bp
CATACCTTGACATCCCTCGTCATGACACCCGTAGCATCAACATCGGCTGT
TCAGCAAAAGAAACGCAAGAGGTCAAAGCACGGCGGGAGCACTGCCGTCG
CCTCGACCTCGACCTCGACCATAGAGGCGAGTCCGGTGAAAAAGGTCAAG
AGCAAGGGAGAGGGCAAGCAACGTCAAGCTGTTGCTGCCGAGGAGAAGGA
AGATGACGATGAGGATGCTGTCGAGGAGCAGGAAGAGTCTGCTGCCGGGC
CGTCTGGGGGACAAGCTATGGACACGACCCCAGCCTCTGCTCCTGTCTCT
GCCGAAGCTGGTCCTTCGACAACCTCGGCCGCATCGGACACACCTACTAC
CACCGCCGGAACGGCCCTGACCTCTCAAACTTTCACCTCCCTCAACCTCT
CTTCCCAAACTCAATCCGCCATCGACGCCCTCGGATTCACCTCGATGACA
GAAGTTCAAGCCCGGACCATCCCTCCTCTCCTCTCCGGACGTGACGTCCT
CGGTGCAGCCCGAACCGGATCCGGCAAGACCCTGGCTTTCCTGATCCCTT
CCATCGAAATCCTCAGTACTCTCAAGTTCAAACCGGCCAACGGGACGGGT
ATCATCATCCTCACGCCAACCAGGGAACTGGCCCTTCAGATCTTCTCCAT
CGTGAGGGATCTGATGGGTGGATTCCACAGTCAGACGTCTGGAGTAGTCA
TGGGCGGTGCGAATAGGAAATCCGAGGCGGATAGGTTGGCCAAGGGGGTC
AACCTGATCGTGGCTACTCCGGGGAGGTTGTTGGATCACTTGAGGAACAC
CAAATCCTTCGTTTTTCAGAATCTCAAAGCGCTCGTCATCGACGAGGCGG
ACCGGATCTTGGAAGTCGGGTTCGAGGAGGAAATGA
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